Sequencing of non-virulent strains of Fusarium fujikuroi reveals genes putatively involved in bakanae disease of rice

2021 ◽  
pp. 103622
Author(s):  
Edoardo Piombo ◽  
Marco Rosati ◽  
Martina Sanna ◽  
Monica Mezzalama ◽  
M. Lodovica Gullino ◽  
...  
Keyword(s):  
Fusarium Fujikuroi ◽  
Bakanae Disease ◽  
Virulent Strains

Activity of A Novel Succinate Dehydrogenase Inhibitor Fungicide Pydiflumetofen against Fusarium fujikuroi causing Rice Bakanae Disease

Plant Disease ◽  
2021 ◽  
Author(s):  
Yang Bai ◽  
Chun-Yan Gu ◽  
Rui Pan ◽  
Muhammad Abid ◽  
Hao-Yu Zang ◽  
...  
Keyword(s):  
Cell Membrane ◽  
Succinate Dehydrogenase ◽  
Field Trials ◽  
Cell Membrane Permeability ◽  
Cross Resistance ◽  
Fusarium Fujikuroi ◽  
Control Efficacy ◽  
Bakanae Disease ◽  
Geographical Regions ◽  
Succinate Dehydrogenase Inhibitor

New fungicides are tools to manage fungal diseases and overcome emerging resistance in fugnal pathogens. In this study, a total of 121 isolates of Fusarium fujikuroi, the causal agent of rice bakanae disease (RBD), were collected from various geographical regions of China, and their sensitivity to a novel succinate dehydrogenase inhibitor (SDHI)fungicide ‘pydiflumetofen’ was evaluated. The 50% effective concentration (EC50) value of pydiflumetofen for mycelial growth suppression ranged from 0.0101 to 0.1012 μg/ml and for conidial germination inhibition ranged from 0.0051to 0.1082 μg/ml. Pydiflumetofen treated hyphae showed contortion and increased branching, cell membrane permeability, and glycerol content significantly. The result of electron microscope transmission indicated that pydiflumetofen damaged the mycelial cell wall and the cell membrane, and almost broken up the cells, which increased the intracellular plasma leakage. There was no cross-resistance between pydiflumetofen and the widely used fungicides such as carbendazim, prochloraz, and phenamacril. Pydiflumetofen was found safe to seeds and rice seedlings of four rice cultivars, used up to 400 μg/ml. Seed treatment significantly decreased the rate of diseased plants in the greenhouse as well as in field trials in 2017 and 2018. Pydiflumetofen showed superb results against RBD, when used at 10 or 20 g a.i./100 kg of treated seeds, providing over 90% control efficacy (the highest control efficacy was up to 97%), which was significantly higher than that of 25% phenamacril (SC) at 10g or carbendazim at 100 g. Pydiflumetofen is highly effective against F. fujikuroi growth and sporulation as well as RBD in the field.

scholarly journals Genetic Differentiation Associated with Fumonisin and Gibberellin Production in JapaneseFusarium fujikuroi

2018 ◽  
Vol 85 (1) ◽  
Author(s):  
Haruhisa Suga ◽  
Mitsuhiro Arai ◽  
Emi Fukasawa ◽  
Keiichi Motohashi ◽  
Hiroyuki Nakagawa ◽  
...  
Keyword(s):  
Rna Polymerase Ii ◽  
Genetic Relationships ◽  
Pathogenic Fungus ◽  
Phylogenetic Analyses ◽  
Aflp Markers ◽  
Fusarium Fujikuroi ◽  
Rice Seedlings ◽  
Bakanae Disease ◽  
Content Type ◽  
Gibberellin Production

ABSTRACTFusarium fujikuroiis a pathogenic fungus that infects rice. It produces several important mycotoxins, such as fumonisins. Fumonisin production has been detected in strains of maize, strawberry, and wheat, whereas it has not been detected in strains from rice seedlings infested with bakanae disease in Japan. We investigated the genetic relationships, pathogenicity, and resistance to a fungicide, thiophanate-methyl (TM), in 51 fumonisin-producing strains and 44 nonproducing strains. Phylogenetic analyses based on amplified fragment length polymorphism (AFLP) markers and two specific genes (a combined sequence of translation elongation factor 1α [TEF1α] and RNA polymerase II second-largest subunit [RPB2]) indicated differential clustering between the fumonisin-producing and -nonproducing strains. One of the AFLP markers, EATMCAY107, was specifically present in the fumonisin-producing strains. A specific single nucleotide polymorphism (SNP) between the fumonisin-producing and nonproducing strains was also detected inRPB2, in addition to an SNP previously found inTEF1α. Gibberellin production was higher in the nonproducing than in the producing strains according to anin vitroassay, and the nonproducing strains had the strongest pathogenicity with regard to rice seedlings. TM resistance was closely correlated with the cluster of fumonisin-nonproducing strains. The results indicate that intraspecific evolution in JapaneseF. fujikuroiis associated with fumonisin production and pathogenicity. Two subgroups of JapaneseF. fujikuroi, designated G group and F group, were distinguished based on phylogenetic differences and the high production of gibberellin and fumonisin, respectively.IMPORTANCEFusarium fujikuroiis a pathogenic fungus that causes rice bakanae disease. Historically, this pathogen has been known asFusarium moniliforme, along with many other species based on a broad species concept. Gibberellin, which is currently known as a plant hormone, is a virulence factor ofF. fujikuroi. Fumonisin is a carcinogenic mycotoxin posing a serious threat to food and feed safety. Although it has been confirmed thatF. fujikuroiproduces gibberellin and fumonisin, production varies among strains, and individual production has been obscured by the traditional appellation ofF. moniliforme, difficulties in species identification, and variation in the assays used to determine the production of these secondary metabolites. In this study, we discovered two phylogenetic subgroups associated with fumonisin and gibberellin production in JapaneseF. fujikuroi.

scholarly journals First report of rice bakanae disease caused by Fusarium fujikuroi Nirenberg in Turkey

2020 ◽  
Vol 102 (4) ◽  
pp. 1315-1315
Author(s):  
Yeşim Eğerci ◽  
Pervin Kınay-Teksür ◽  
Ayşe Uysal-Morca
Keyword(s):  
Fusarium Fujikuroi ◽  
Bakanae Disease ◽  
First Report

scholarly journals A New Mutation Genotype of K218T in Myosin-5 Confers Resistance to Phenamacril in Rice Bakanae Disease in the Field

Plant Disease ◽  
2020 ◽  
Vol 104 (4) ◽  
pp. 1151-1157 ◽  
Author(s):  
J. Y. Wu ◽  
Y. N. Sun ◽  
X. J. Zhou ◽  
C. Q. Zhang
Keyword(s):  
Point Mutation ◽  
Inhibitory Concentration ◽  
Control Strategies ◽  
Rapid Development ◽  
Rice Fields ◽  
Fusarium Fujikuroi ◽  
New Mutation ◽  
Bakanae Disease ◽  
Rice Plants ◽  
Concentration Methods

In 2017 and 2018, a total of 294 Fusarium fujikuroi isolates were collected from bakanae-diseased rice plants in Jinhua, Shaoxing, and Jiaxing in Zhejiang Province, China. Phenamacril sensitivity of these isolates was determined by the 50% effective concentration value or minimum inhibitory concentration methods. Our results indicated that the phenamacril resistance frequency of F. fujikuroi increased from 18% in 2017 to 47% in 2018, and rice plants infected with F. fujikuroi-resistant isolates could not be protected effectively with 50 mg/liter of phenamacril. Phenamacril-resistant F. fujikuroi isolates obtained from rice fields showed stable resistance, because their fitness levels (i.e., mycelial growth, sporulation, and pathogenicity) were similar to the phenamacril-sensitive isolates. In addition to the point mutation at codon 219 in the myosin-5 gene that conferred resistance to phenamacril, our results also showed another point mutation at codon 218 (AAG→ACG) in myosin-5 that also conferred resistance to phenamacril. In this study, we found rapid development and persistence of diversified genotypes of phenamacril resistance, highlighting the importance of proper use of phenamacril in rice fields. Our results may also help researchers develop new fungicides or new control strategies using combinations of different fungicides in the control of phenamacril-resistant F. fujikuroi isolates.

scholarly journals Population Structure of Fusarium fujikuroi from California Rice and Water Grass

2008 ◽  
Vol 98 (9) ◽  
pp. 992-998 ◽  
Author(s):  
L. L. A. Carter ◽  
J. F. Leslie ◽  
R. K. Webster
Keyword(s):  
Population Structure ◽  
Fragment Length Polymorphism ◽  
Genotypic Variation ◽  
Genotypic Diversity ◽  
Population Diversity ◽  
Fusarium Fujikuroi ◽  
Mating Types ◽  
Bakanae Disease ◽  
Barnyard Grass ◽  
Vegetative Compatibility Groups

The recent observance of Fusarium fujikuroi, the causal agent of Bakanae disease of rice, in California provides a unique opportunity to assess the population diversity of an introduced pathogen in a new environment. We collected 172 isolates of this pathogen between 2000 and 2003 from California rice and two from water grass (Echinochloa spp.). Pathogenicity of F. fujikuroi was demonstrated on early water grass (E. oryzoides) and barnyard grass (E. crus-galli) indicating that weed control should be part of Bakanae management programs. Both mating types and six unique amplified fragment length polymorphism haplotypes corresponding to six identified vegetative compatibility groups were detected. The two most frequently isolated haplotypes encompassed 94% of the collected isolates, suggesting that clonal reproduction dominates. Coefficients of similarity between the unique haplotypes ranged from 0.94 to 0.98, and indicate that there is very little genotypic variation in the F. fujikuroi population in California. The near fixation of the MAT-1 idiomorph (observed ratio 170 MAT-1:4 MAT-2), is consistent with a hypothesis of predominant or exclusive asexual reproduction. The low level of introduced genotypic diversity, in conjunction with the asexual reproductive strategy of this population will slow evolutionary processes, including adaptation to the California environment.

scholarly journals Molecular mapping of qBK1Z, a major QTL for bakanae disease resistance in rice

2020 ◽  
Author(s):  
Sais-Beul Lee ◽  
Namgyu Kim ◽  
Sumin Jo ◽  
Yeon-Jae Hur ◽  
Ji-youn Lee ◽  
...  
Keyword(s):  
Disease Resistance ◽  
Molecular Mapping ◽  
Disease Incidence ◽  
Recombinant Inbred Lines ◽  
Rice Variety ◽  
Gibberella Fujikuroi ◽  
Chromosome 1 ◽  
Resistant Variety ◽  
Fusarium Fujikuroi ◽  
Bakanae Disease

AbstractBakanae disease is a fungal disease of rice (Oryza sativa L.) caused by the pathogen Gibberella fujikuroi (also known as Fusarium fujikuroi). Recently the disease incidence has increased in several Asian countries and continues to spread throughout the world. No rice varieties have been developed yet to be completely resistant to this disease. With increasing need to identify various genetic resources to impart resistance to local elite varieties, this study was carried out to identify novel quantitative trait loci (QTLs) from an indica variety Zenith. We performed a QTL mapping using 180 F2:9 recombinant inbred lines (RILs) derived from a cross between the resistant variety, Zenith, and the susceptible variety, Ilpum. A primary QTL study using the genotypes and phenotypes of the RILs indicated that the locus qBK1z conferring bakanae disease resistance from the Zenith was located in a 2.8 Mb region bordered by the two SSR markers, RM1331 and RM3530 on chromosome 1.The log of odds (LOD) score of qBK1z was 13.43, accounting for 30.9% of the total phenotypic variation. A finer localization of qBK1z was delimited at an approximate 730 kb interval in the physical map between Chr01_1435908 (1.43 Mbp) and RM10116 (2.16 Mbp). The development of a rice variety with a higher level of resistance against bakanae disease is a major challenge in many rice growing countries. Introducing qBK1z or pyramiding with other previously identified QTLs could provide effective genetic control of bakanae disease in rice.

Effect of Rice Seed Disinfection of Loess-sulfur on the Suppression of Bakanae disease caused by Fusarium fujikuroi

2017 ◽  
Vol 25 (2) ◽  
pp. 345-355
Author(s):  
So, Hyun-Kyu ◽  
◽  
Kim, Yong-Ki ◽  
Hong, Sung-Jun ◽  
Han, Eun-Jung ◽  
...  
Keyword(s):  
Fusarium Fujikuroi ◽  
Rice Seed ◽  
Bakanae Disease ◽  
Seed Disinfection
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