scholarly journals Cold-induced ginsenosides accumulation is associated with the alteration in DNA methylation and relative gene expression in perennial American ginseng (Panax quinquefolius L.) along with its plant growth and development process

2020 ◽  
Vol 44 (5) ◽  
pp. 747-755
Author(s):  
Mengzhen Hao ◽  
Yuhang Zhou ◽  
Jinhui Zhou ◽  
Min Zhang ◽  
Kangjiao Yan ◽  
...  
2018 ◽  
Vol 19 (7) ◽  
pp. 2144 ◽  
Author(s):  
Arthur Bartels ◽  
Qiang Han ◽  
Pooja Nair ◽  
Liam Stacey ◽  
Hannah Gaynier ◽  
...  

DNA methylation is an epigenetic modification required for transposable element (TE) silencing, genome stability, and genomic imprinting. Although DNA methylation has been intensively studied, the dynamic nature of methylation among different species has just begun to be understood. Here we summarize the recent progress in research on the wide variation of DNA methylation in different plants, organs, tissues, and cells; dynamic changes of methylation are also reported during plant growth and development as well as changes in response to environmental stresses. Overall DNA methylation is quite diverse among species, and it occurs in CG, CHG, and CHH (H = A, C, or T) contexts of genes and TEs in angiosperms. Moderately expressed genes are most likely methylated in gene bodies. Methylation levels decrease significantly just upstream of the transcription start site and around transcription termination sites; its levels in the promoter are inversely correlated with the expression of some genes in plants. Methylation can be altered by different environmental stimuli such as pathogens and abiotic stresses. It is likely that methylation existed in the common eukaryotic ancestor before fungi, plants and animals diverged during evolution. In summary, DNA methylation patterns in angiosperms are complex, dynamic, and an integral part of genome diversity after millions of years of evolution.


2020 ◽  
Vol 21 (13) ◽  
pp. 4593 ◽  
Author(s):  
Lijuan Xuan ◽  
Jian Li ◽  
Xinyu Wang ◽  
Chongying Wang

Hydrogen sulfide (H2S), once recognized only as a poisonous gas, is now considered the third endogenous gaseous transmitter, along with nitric oxide (NO) and carbon monoxide (CO). Multiple lines of emerging evidence suggest that H2S plays positive roles in plant growth and development when at appropriate concentrations, including seed germination, root development, photosynthesis, stomatal movement, and organ abscission under both normal and stress conditions. H2S influences these processes by altering gene expression and enzyme activities, as well as regulating the contents of some secondary metabolites. In its regulatory roles, H2S always interacts with either plant hormones, other gasotransmitters, or ionic signals, such as abscisic acid (ABA), ethylene, auxin, CO, NO, and Ca2+. Remarkably, H2S also contributes to the post-translational modification of proteins to affect protein activities, structures, and sub-cellular localization. Here, we review the functions of H2S at different stages of plant development, focusing on the S-sulfhydration of proteins mediated by H2S and the crosstalk between H2S and other signaling molecules.


2019 ◽  
Vol 7 (3) ◽  
pp. 411-418 ◽  
Author(s):  
Wenchao Yin ◽  
Nana Dong ◽  
Mei Niu ◽  
Xiaoxing Zhang ◽  
Lulu Li ◽  
...  

2012 ◽  
Vol 158 (4) ◽  
pp. 1955-1964 ◽  
Author(s):  
Young-Hee Cho ◽  
Jung-Woo Hong ◽  
Eun-Chul Kim ◽  
Sang-Dong Yoo

2013 ◽  
Vol 35 (5) ◽  
pp. 14-17
Author(s):  
Katherine J. Baxter ◽  
Gareth I. Jenkins

Sunlight not only drives photosynthesis, but also provides cues to regulate plant growth and development. Termed photomorphogenesis, this ability to modulate development in response to changes in light is key to plant survival. Plants have evolved several photoreceptors to perceive and respond to different wavelengths of light found in the daylight spectrum. The majority of plant photoreceptors are proteins with a bound chromophore, a non-protein component that captures photon energy from a particular wavelength of light and converts it into a signal by inducing conformational changes in the protein itself. The resulting changes in the protein activate a signal cascade, which in turn produces alterations in gene expression, allowing the plant to adapt to the light environment. This article discusses what is known about a novel plant photoreceptor, UVR8, and the signalling pathway it activates.


Plants ◽  
2019 ◽  
Vol 8 (11) ◽  
pp. 504 ◽  
Author(s):  
Begum ◽  
Hu ◽  
Cai ◽  
Lou

This study aimed to evaluate the gene expression of HSP70 and HMA3 in the switchgrass inoculated with plant-growth-promoting-bacteria (PGPB) under cadmium (Cd) stress and to observe the benefit of PGPB in plant growth and development. Plants were grown in hydroponic culture and treated with PGPB inoculants: Pseudomonas grimontii, Pantoea vagans, Pseudomonas veronii, and Pseudomonas fluorescens with the strains Bc09, So23, E02, and Oj24, respectively. The experimental results revealed that HSP70 and HMA3 genes expressed highly in the PGPB-inoculated plants under Cd stress. In addition, the expression of HSP70 and HMA3 genes was considerably higher in the first two days after successive four-day exposure of Cd in plants compared to the last two days of exposure. Increased biomass and indole-3-acetic-acid production with reduced Cd accumulation were observed in the PGPB-inoculated plants under Cd stress compared to the Cd-control plants. These PGPB, with their beneficial mechanisms, protect plants by modifying the gene expression profile that arises during Cd-toxic conditions and increased the healthy biomass of switchgrass. This demonstrates there is a correlation among the growth parameters under Cd stress. The PGPB in this study may help to intensify agriculture by triggering mechanisms to encourage plant growth and development under heavy metal stress.


2020 ◽  
Vol 21 (21) ◽  
pp. 7909
Author(s):  
Dongli He ◽  
Rebecca Njeri Damaris ◽  
Ming Li ◽  
Imran Khan ◽  
Pingfang Yang

Post-translational modifications (PTMs) of proteins enable modulation of their structure, function, localization and turnover. To date, over 660 PTMs have been reported, among which, reversible PTMs are regarded as the key players in cellular signaling. Signaling mediated by PTMs is faster than re-initiation of gene expression, which may result in a faster response that is particularly crucial for plants due to their sessile nature. Ubiquitylation has been widely reported to be involved in many aspects of plant growth and development and it is largely determined by its target protein. It is therefore of high interest to explore new ubiquitylated proteins/sites to obtain new insights into its mechanism and functions. In the last decades, extensive protein profiling of ubiquitylation has been achieved in different plants due to the advancement in ubiquitylated proteins (or peptides) affinity and mass spectrometry techniques. This obtained information on a large number of ubiquitylated proteins/sites helps crack the mechanism of ubiquitylation in plants. In this review, we have summarized the latest advances in protein ubiquitylation to gain comprehensive and updated knowledge in this field. Besides, the current and future challenges and barriers are also reviewed and discussed.


2012 ◽  
Vol 10 (3) ◽  
pp. 28-40
Author(s):  
Varvara E Tvorogova ◽  
Maria A Osipova ◽  
Irina E Dodueva ◽  
Ludmila A Lutova

Plant growth and development are controlled by large regulatory network which modulates activity of special groups of cells — apical meristems. This control is performed by means of phytohormones and transcriptional factors, the regulators of gene expression. In this review principal transcriptional factors regulating plant apical meristems are described, and the data are presented about their interactions with the most important plant hormones, auxins, cytokinins and gibberellins. General tendencies of these interactions are depicted.


2015 ◽  
Vol 58 ◽  
pp. 61-70 ◽  
Author(s):  
Paul B. Larsen

Ethylene is the simplest unsaturated hydrocarbon, yet it has profound effects on plant growth and development, including many agriculturally important phenomena. Analysis of the mechanisms underlying ethylene biosynthesis and signalling have resulted in the elucidation of multistep mechanisms which at first glance appear simple, but in fact represent several levels of control to tightly regulate the level of production and response. Ethylene biosynthesis represents a two-step process that is regulated at both the transcriptional and post-translational levels, thus enabling plants to control the amount of ethylene produced with regard to promotion of responses such as climacteric flower senescence and fruit ripening. Ethylene production subsequently results in activation of the ethylene response, as ethylene accumulation will trigger the ethylene signalling pathway to activate ethylene-dependent transcription for promotion of the response and for resetting the pathway. A more detailed knowledge of the mechanisms underlying biosynthesis and the ethylene response will ultimately enable new approaches to be developed for control of the initiation and progression of ethylene-dependent developmental processes, many of which are of horticultural significance.


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