scholarly journals In situ determination of crystal structure and chemistry of minerals at Earth's deep lower mantle conditions

2017 ◽  
Vol 2 (3) ◽  
pp. 117-128 ◽  
Author(s):  
Hongsheng Yuan ◽  
Li Zhang
2020 ◽  
Author(s):  
Keishiro Yamashita ◽  
Kazuki Komatsu ◽  
Hiroyuki Kagi

An crystal-growth technique for single crystal x-ray structure analysis of high-pressure forms of hydrogen-bonded crystals is proposed. We used alcohol mixture (methanol: ethanol = 4:1 in volumetric ratio), which is a widely used pressure transmitting medium, inhibiting the nucleation and growth of unwanted crystals. In this paper, two kinds of single crystals which have not been obtained using a conventional experimental technique were obtained using this technique: ice VI at 1.99 GPa and MgCl<sub>2</sub>·7H<sub>2</sub>O at 2.50 GPa at room temperature. Here we first report the crystal structure of MgCl2·7H2O. This technique simultaneously meets the requirement of hydrostaticity for high-pressure experiments and has feasibility for further in-situ measurements.


CrystEngComm ◽  
2019 ◽  
Vol 21 (1) ◽  
pp. 41-52 ◽  
Author(s):  
Siriyara Jagannatha Prathapa ◽  
Cara Slabbert ◽  
Manuel A. Fernandes ◽  
Andreas Lemmerer

In situ cryocrystallisation enabled the crystal structure determination of a homologous series of low-melting n-alkyl methyl esters Cn−1H2n+1CO2CH3.


Nanoscale ◽  
2020 ◽  
Vol 12 (9) ◽  
pp. 5471-5482
Author(s):  
Julian Jakob ◽  
Philipp Schroth ◽  
Ludwig Feigl ◽  
Daniel Hauck ◽  
Ullrich Pietsch ◽  
...  

In situ RHEED enables a height-resolved determination of the crystal structure of vertical nanowires via self-shadowing and ensemble shadowing.


Author(s):  
R. E. Ogilvie ◽  
S. H. Moll ◽  
M. A. Schippert

An X-ray spectrometer has been developed to extend the analytical capability of the Philips EM-200/EM-300 Electron Microscopes to studies of sample chemistry. It attaches directly to the objective aperture port of the rotating/tilting specimen stage.Shown in Figure 1, the spectrometer is a high resolution instrument, employing a mica crystal which is continuously curved to fulfill the X-ray focusing conditions over the entire angular range. Equipped with a flow proportional counter, it is capable of analyzing characteristic X-ray lines of any element from Na through U. With the rotating/tilting specimen stage and a replacement aperture installed in the microscope, the spectrometer may be attached to or removed from the instrument in less than five minutes. It may also be left in situ during normal use of the microscope.Supplementing the present ability of the electron microscope to investigate morphology and crystal structure (by electron diffraction), the spectrometer allows the simultaneous determination of chemical composition by microprobe X-ray fluorescence analysis of areas approximately one micron in diameter.


2019 ◽  
Author(s):  
Keishiro Yamashita ◽  
Kazuki Komatsu ◽  
Hiroyuki Kagi

An crystal-growth technique for single crystal x-ray structure analysis of high-pressure forms of hydrogen-bonded crystals is proposed. We used alcohol mixture (methanol: ethanol = 4:1 in volumetric ratio), which is a widely used pressure transmitting medium, inhibiting the nucleation and growth of unwanted crystals. In this paper, two kinds of single crystals which have not been obtained using a conventional experimental technique were obtained using this technique: ice VI at 1.99 GPa and MgCl<sub>2</sub>·7H<sub>2</sub>O at 2.51 GPa at room temperature. Here we first report the crystal structure of MgCl2·7H2O. This technique simultaneously meets the requirement of hydrostaticity for high-pressure experiments and has feasibility for further in-situ measurements.


1999 ◽  
Vol 55 (1) ◽  
pp. 70-77 ◽  
Author(s):  
G. J. Perpétuo ◽  
J. Buschmann ◽  
P. Luger ◽  
D. Lentz ◽  
D. Dreissig

Crystals of N-(trifluoromethyl)formamide, C2H2F3NO, (I), N-(2,2,2-trifluoroethyl)formamide, C3H4F3NO, (II), and 2,2,2-trifluoroethyl isocyanide, C3H2F3N, (III), were grown in situ on an X-ray diffractometer and analysed by single-crystal X-ray diffraction methods at low temperatures. Crystal data: (I) orthorhombic, P212121, a = 4.547 (2) Å, b = 5.947 (3) Å, c = 14.731 (9) Å, V = 398.3 (4) Å3, Z = 4, M r = 113.05, T = 143 K, D x = 1.885 Mg m−3; (II) monoclinic, P21/n, a = 4.807 (1) Å, b = 16.707 (3) Å, c = 6.708 (1) Å, β = 109.90 (1)°, V = 506.6 (2) Å3, Z = 4, M r = 127.07, T = 141 K, D x = 1.666 Mg m−3; (III) orthorhombic, P212121, a = 5.668 (2) Å, b = 9.266 (3) Å, c = 8.626 (2) Å, V = 453.0 (2) Å3, Z = 4, M r = 109.06, T = 163 K, D x = 1.599 Mg m−3. The results showed that in the crystal both formamides (I) and (II) are exclusively present in the form of the Z isomer, although measurements of solutions of (I) have shown that the E isomer prevails [Lentz et al. (1987). Angew. Chem. 99, 951–953]. In addition ab initio calculations for (I) predicted the E isomer to be the more stable one. In compound (III) the isocyanide group is staggered with respect to the trifluoroethyl group. In the crystal packing of (I) and (II) intermolecular N—H\cdotsO hydrogen bonds generate infinite chains. In (I), these chains are linked to form sheets by C—H\cdotsO contacts. In the crystal structure of (III) each isocyanide dipole is surrounded by four electronegative F atoms with intermolecular C\cdotsF contacts between 3.4 and 3.5 Å.


2021 ◽  
Author(s):  
Weixi Gu ◽  
Zhenyao Luo ◽  
Clemens Vonrhein ◽  
Xinying Jia ◽  
Thomas Ve ◽  
...  

AbstractWe describe the crystal structure determination of the ARM domain of Drosophila SARM1 (dSARM1ARM), which required combination of a number of sources of phase information in order to obtain interpretable electron density maps. SARM1 is a central executioner of the process of axon degeneration, a common feature of the early phase of a range of neurodegenerative diseases. SARM1 is held in the inactive state in healthy axons by its N-terminal auto-inhibitory ARM domain, and is activated to cleave NAD+ upon injury, triggering the subsequent axon degeneration. To characterize the molecular mechanism of SARM1 activation, we sought to determine the crystal structure of the SARM1 ARM domain. Here we describe the recombinant production and crystallization of dSARM1ARM, as well as unconventional process used for structure determination. Crystals were obtained in the presence of NMN, a precursor of NAD+ and a potential activator of SARM1, only after in situ proteolysis of the N-terminal 63 residues. After molecular replacement attempts failed, we determined the crystal structure of dSARM1ARM at 1.65 Å resolution using the MIRAS phasing technique with the program autoSHARP, combining data from the native, SeMet-labelled, and Br-soaked crystals. The structure will further our understanding of the regulation of SARM1.


2011 ◽  
Vol 67 (4) ◽  
pp. 357-364 ◽  
Author(s):  
Mauro Bortolotti ◽  
Ivan Lonardelli ◽  
Giancarlo Pepponi

The crystal structure of the metastable form C polymorph of nifedipine [C17H18N2O6, 3,5-dimethyl 2,6-dimethyl-4-(2-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate] was determined by means of direct-space techniques applied to high-resolution synchrotron powder diffraction data. The polymorph crystallizes in the space group P\bar 1 and exhibits a molecular packing significantly different from that of the stable modification, with molecules aligned in an orthogonal configuration inside the unit cell. The molecular conformation, on the other hand, remains substantially unmodified between the two polymorphs. Additionally, in situ thermal characterization of nifedipine crystallization behaviour was performed, confirming the nucleation of another metastable polymorph (form B) prior to the complete crystallization of the stable modification. A complete structural characterization of form B was not possible owing to its very limited stability interval.


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