Flow microdialysis sampling-chemiluminescent detection coupled with molecular docking for the investigation of binding behavior between salbutamol and DNA

Talanta ◽  
2020 ◽  
Vol 208 ◽  
pp. 120367
Author(s):  
Pingshi Wang ◽  
Lin Wang ◽  
Zhihong Peng ◽  
Zhifeng Fu
2018 ◽  
Vol 269 ◽  
pp. 511-520 ◽  
Author(s):  
Nasser Abdulatif Al-Shabib ◽  
Javed Masood Khan ◽  
Ajamaluddin Malik ◽  
Mohammad A. Alsenaidy ◽  
Md Tabish Rehman ◽  
...  

2020 ◽  
Author(s):  
Alaa El-DinA. Gawad ◽  
Ahmed M. Bayoumy ◽  
Medhat A. Ibrahim

Abstract There are no expedient proven to stop the outbreak of SARS-CoV-2 at this phase. This leads to diversity of endeavors to find out the effective drug or vaccine. One of these possibilities is to exploit the unique characteristics of fullerene-based derivatives. A computer-aided method (molecular docking) was applied to assess the differential binding behavior of these compounds and determining hydrophobic forces, electrostatic interactions, and hydrogen bonds played vital roles in the interactions with SARS-CoV-2 spike protein. The molecular docking calculation clarifies the binding mode and the binding sites may facilitate the development of new or improved therapeutic regimes effective against COVID-19. Fulleropyrrolidine-NH2 seems to be promising candidate for interacting with SARS-CoV-2 binding site.


2020 ◽  
Vol 22 (1) ◽  
pp. 209
Author(s):  
Amanat Ali ◽  
Elizabeth K. M. Johnstone ◽  
Bincy Baby ◽  
Heng B. See ◽  
Angela Song ◽  
...  

Hemorphins are known for their role in the control of blood pressure. Recently, we revealed the positive modulation of the angiotensin II (AngII) type 1 receptor (AT1R) by LVV-hemorphin-7 (LVV-H7) in human embryonic kidney (HEK293) cells. Here, we examined the molecular binding behavior of LVV-H7 on AT1R and its effect on AngII binding using a nanoluciferase-based bioluminescence resonance energy transfer (NanoBRET) assay in HEK293FT cells, as well as molecular docking and molecular dynamics (MD) studies. Saturation and real-time kinetics supported the positive effect of LVV-H7 on the binding of AngII. While the competitive antagonist olmesartan competed with AngII binding, LVV-H7 slightly, but significantly, decreased AngII’s kD by 2.6 fold with no effect on its Bmax. Molecular docking and MD simulations indicated that the binding of LVV-H7 in the intracellular region of AT1R allosterically potentiates AngII binding. LVV-H7 targets residues on intracellular loops 2 and 3 of AT1R, which are known binding sites of allosteric modulators in other GPCRs. Our data demonstrate the allosteric effect of LVV-H7 on AngII binding, which is consistent with the positive modulation of AT1R activity and signaling previously reported. This further supports the pharmacological targeting of AT1R by hemorphins, with implications in vascular and renal physiology.


2021 ◽  
Vol 12 (1) ◽  
pp. 1053-1075

A scary viral pneumonia (COVID-19) has recently engulfed the globe. The new strain of the virus, named SARS-CoV-2, belongs to the coronavirus family, so research aims to screen multimodal structure-based structure-design of ligands and drugs and then docked to the main viral protease to investigate the active binding sites. A new 3-acetyl-7-hydroxy coumarin (HL) and its Cu(II), Ni(II), Zn(II), and Mn(II) complexes have been formed and characterized by elemental analysis, IR, 1H NMR, and UV visible spectra, as well as magnetic and thermal measurements. Molar conductance experiments have shown that all complexes are non-ionic or non-electrolytes. IR spectra show that the ligand (HL) behaves as a bidentate monobasic ligand coordinating via the oxygen atom of the deprotonated phenolic -OH group and the nitrogen atom of the azo group (-N=N-), forming a six-member chelating ring. The molecular and electronic structures of the investigated compounds were also analyzed using quantum chemical calculations. The complexes’ thermal decomposition exposed the outer and inner water molecules as well as the end product, which is mainly metal oxide. The thermodynamic parameter ligand (HL) and its metal complexes are calculated using the Coats-Redfern and Horowitz Metzger methods. Using absorption spectra, the ligand (HL) binding behavior of the calf thymus DNA and its metal complexes were studied. A molecular docking simulation computational method is performed to screen the antiviral activity of drugs, natural drug activity, sources, and anti-SARS-CoV-2 genome inhibitory compounds. The primary virus protease collected from a Bank of Protein Data (PDB# 6YB7) and docked with a sequence of HL and its complexes. On the other hand, the prediction of binding between azo compound with the breast cancer receptor 3hb5-oxidoreductase and the prostate cancer mutant 2q7k – hormone was also made. The docking results were promised and indicated that the reported ligand can firmly bind to the SARS-CoV-2, breast, and prostate cancer leads to inhibition of its infectious impact. The cytotoxic activity of ligand (HL) and its metal complexes was tested against human cancer MCF-7 (breast cancer).


Sign in / Sign up

Export Citation Format

Share Document