scholarly journals Fixation and effective size in a haploid–diploid population with asexual reproduction

Author(s):  
Kazuhiro Bessho ◽  
Sarah P. Otto
2020 ◽  
Author(s):  
Kazuhiro Bessho ◽  
Sarah P. Otto

AbstractThe majority of population genetic theory assumes fully haploid or diploid organisms with obligate sexuality, despite complex life cycles with alternating generations being commonly observed. To reveal how natural selection and genetic drift shape the evolution of haploid-diploid populations, we analyze a stochastic genetic model for populations that consist of a mixture of haploid and diploid individuals, allowing for asexual reproduction and niche separation between haploid and diploid stages. Applying a diffusion approximation, we derive the fixation probability and describe its dependence on the reproductive values of haploid and diploid stages, which depend strongly on the extent of asexual reproduction in each phase and on the ecological differences between them.


Genetics ◽  
2001 ◽  
Vol 157 (2) ◽  
pp. 867-874
Author(s):  
Jinliang Wang

Abstract An approach to the optimal utilization of marker and pedigree information in minimizing the rates of inbreeding and genetic drift at the average locus of the genome (not just the marked loci) in a small diploid population is proposed, and its efficiency is investigated by stochastic simulations. The approach is based on estimating the expected pedigree of each chromosome by using marker and individual pedigree information and minimizing the average coancestry of selected chromosomes by quadratic integer programming. It is shown that the approach is much more effective and much less computer demanding in implementation than previous ones. For pigs with 10 offspring per mother genotyped for two markers (each with four alleles at equal initial frequency) per chromosome of 100 cM, the approach can increase the average effective size for the whole genome by ∼40 and 55% if mating ratios (the number of females mated with a male) are 3 and 12, respectively, compared with the corresponding values obtained by optimizing between-family selection using pedigree information only. The efficiency of the marker-assisted selection method increases with increasing amount of marker information (number of markers per chromosome, heterozygosity per marker) and family size, but decreases with increasing genome size. For less prolific species, the approach is still effective if the mating ratio is large so that a high marker-assisted selection pressure on the rarer sex can be maintained.


1997 ◽  
Vol 70 (3) ◽  
pp. 251-258 ◽  
Author(s):  
KATSUEI YONEZAWA

The variance effective size (Ne) was formulated for populations of monoecious plant species that are partly asexually propagating with discrete or overlapping generations. It was shown that partly asexually reproducing populations have larger or smaller effective sizes (ratios to the census size N) than fully sexually reproducing populations, according to whether the term Vc/c¯ is smaller or larger than the term (Vk/k¯ +1−β)/2, where c¯ and Vc are the mean and variance of the number of progeny asexually produced per plant per year, respectively, k¯ and Vk are the mean and variance of the number of gametes contributed per plant per year, respectively, and β is the selfing rate of each plant. Asexual reproduction has no effect on Ne when the two terms are equal, as is true when the numbers of both sexually and asexually produced progeny per plant per year are Poisson-distributed (Vc/c¯=1 and Vk/k¯=1+β). Populations with a larger generation length (L) tend to have a smaller effective size: for a population model of age-independent survival and fecundity with an annual rate δ of asexual reproduction, Ne declines asymptotically to N(2−β)/{3−β +Vk/k¯ +(2Vc/c¯ −Vk/k¯ −1+β).δ} as L gets large, which simplifies to N(2−β)/4 under a Poisson-distributed reproductive contribution. The trade-off relation of Ne and L, however, does not always hold: for stage-structured populations, increase in the survival rate of juveniles may act to increase both Ne and L.


2017 ◽  
Vol 51 ◽  
pp. 242-250
Author(s):  
M. V. Dulin

Tetralophozia setiformis is a widespread species occurring usually without organs of sexual and asexual reproduction. Gemmae of Tetralophozia setiformis were observed for the second time in Russia and Eurasia in the Northern Urals, Komi Republic. They form compact masses over upper leaves. The compact masses consist largely (70 %) of immature gemmae. Description of gemmae and gemmiparous shoots from the Northern Urals and their comparison with those from the other known localities, namely British Columbia (Canada) and the Murmansk Region (European Russia) were carried out. The gemmiparous plants of T. setiformis from the Northern Urals have approximately the same width as plants without gemmae but they are shorter. The leaves of gemmiparous plants from the Northern Urals are similar to leaves of gemmiparous plants from British Columbia. The leaf shape in upper part of the gemmiparous shoots varies from the typical to ± modified from gemmae production. These leaf shape transitions include reduction of leaf size and lobe number from 4 to 2–3, suppression of development and disappearance of characteristic teeth at the base of sinus. Gemmae size (17 × 22 μm) of plants from the Northern Urals is within variability recorded for plants from the Murmansk Region and British Columbia.


Impact ◽  
2020 ◽  
Vol 2020 (6) ◽  
pp. 73-75
Author(s):  
Akihiko Watanabe

One of the unifying traits of life on this planet is reproduction, or life's ability to make copies of itself. The mode of reproduction has evolved over time, having almost certainly begun with simple asexual reproduction when the ancestral single celled organism divided into two. Since these beginnings' life has tried out numerous strategies, and perhaps one of the most important and successful has been sexual reproduction. This form of reproduction relies on the union of gametes, otherwise known as sperm and egg. Evolutionarily, sexual reproduction allows for greater adaptive potential because the genes of two unique individuals have a chance to recombine and mix in order to produce a new individual. Unlike asexual reproduction which produces genetically-identical clones of the parent individual, sex produces offspring with novel genes and combinations of genes. Therefore, in the face of new selective pressures there is a higher chance that one of these novel genetic profiles will produce an adaptation that is advantageous in the new circumstances. Dr Akihiko Watanabe is a reproductive biologist based in the Department of Biology, Faculty of Science Yamagata University in Japan, he is currently working on three research projects; a comparative study on the signalling pathways for inducing sperm motility and acrosome reaction in amphibians, the mechanism behind the adaptive modification of sperm morphology and motility, and the origin of sperm motility initiating substance (SMIS).


Genetics ◽  
2003 ◽  
Vol 164 (3) ◽  
pp. 1099-1118 ◽  
Author(s):  
Sarah P Otto

AbstractIn diploids, sexual reproduction promotes both the segregation of alleles at the same locus and the recombination of alleles at different loci. This article is the first to investigate the possibility that sex might have evolved and been maintained to promote segregation, using a model that incorporates both a general selection regime and modifier alleles that alter an individual’s allocation to sexual vs. asexual reproduction. The fate of different modifier alleles was found to depend strongly on the strength of selection at fitness loci and on the presence of inbreeding among individuals undergoing sexual reproduction. When selection is weak and mating occurs randomly among sexually produced gametes, reductions in the occurrence of sex are favored, but the genome-wide strength of selection is extremely small. In contrast, when selection is weak and some inbreeding occurs among gametes, increased allocation to sexual reproduction is expected as long as deleterious mutations are partially recessive and/or beneficial mutations are partially dominant. Under strong selection, the conditions under which increased allocation to sex evolves are reversed. Because deleterious mutations are typically considered to be partially recessive and weakly selected and because most populations exhibit some degree of inbreeding, this model predicts that higher frequencies of sex would evolve and be maintained as a consequence of the effects of segregation. Even with low levels of inbreeding, selection is stronger on a modifier that promotes segregation than on a modifier that promotes recombination, suggesting that the benefits of segregation are more likely than the benefits of recombination to have driven the evolution of sexual reproduction in diploids.


Atmosphere ◽  
2021 ◽  
Vol 12 (1) ◽  
pp. 89
Author(s):  
Harel. B. Muskatel ◽  
Ulrich Blahak ◽  
Pavel Khain ◽  
Yoav Levi ◽  
Qiang Fu

Parametrization of radiation transfer through clouds is an important factor in the ability of Numerical Weather Prediction models to correctly describe the weather evolution. Here we present a practical parameterization of both liquid droplets and ice optical properties in the longwave and shortwave radiation. An advanced spectral averaging method is used to calculate the extinction coefficient, single scattering albedo, forward scattered fraction and asymmetry factor (bext, v, f, g), taking into account the nonlinear effects of light attenuation in the spectral averaging. An ensemble of particle size distributions was used for the ice optical properties calculations, which enables the effective size range to be extended up to 570 μm and thus be applicable for larger hydrometeor categories such as snow, graupel, and rain. The new parameterization was applied both in the COSMO limited-area model and in ICON global model and was evaluated by using the COSMO model to simulate stratiform ice and water clouds. Numerical weather prediction models usually determine the asymmetry factor as a function of effective size. For the first time in an operational numerical weather prediction (NWP) model, the asymmetry factor is parametrized as a function of aspect ratio. The method is generalized and is available on-line to be readily applied to any optical properties dataset and spectral intervals of a wide range of radiation transfer models and applications.


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