Application of the secondary structure model of rRNA for phylogeny: D2–D3 expansion segments of the LSU gene of plant-parasitic nematodes from the family Hoplolaimidae Filipjev, 1934

2007 ◽  
Vol 43 (3) ◽  
pp. 881-890 ◽  
Author(s):  
Sergei A. Subbotin ◽  
Dieter Sturhan ◽  
Nicola Vovlas ◽  
Pablo Castillo ◽  
James Tanyi Tambe ◽  
...  
2017 ◽  
Vol 54 (2) ◽  
pp. 179-182
Author(s):  
F. W. Kornobis ◽  
U. Sobczyńska

SummaryDuring a survey on the occurrence of the plant parasitic nematodes of the family Longidoridae in Poland, 925 soil samples were taken. Longidorus distinctus was present in 10 (1.08 %) of these samples. In this Research Note we provide: 1) distribution map of these populations, 2) morphometric data, 3) sequence data for D2-D3 28S rDNA and (partial)18S-ITS1 -5.8S(partial) markers and 4) LdistFOR primer (5′-GGCTGTAAAGATATATGCGT-3’) effective in obtaining ITS1 sequence for the species. Morphometric similarities and dissimilarities with data on other published populations are discussed.


2021 ◽  
Vol 10 (9) ◽  
Author(s):  
Sergey V. Tarlachkov ◽  
Irina P. Starodumova ◽  
Lubov V. Dorofeeva ◽  
Natalia V. Prisyazhnaya ◽  
Tatiana V. Roubtsova ◽  
...  

ABSTRACT Draft genome sequences of 28 strains of Microbacteriaceae from plants infested by plant-parasitic nematodes were obtained using Illumina technology. The sequence data will provide useful baseline information for the development of comparative genomics and systematics of Microbacteriaceae and facilitate understanding of molecular mechanisms involved in interactions between plants and nematode-associated bacterial complexes.


Zootaxa ◽  
2019 ◽  
Vol 4545 (2) ◽  
pp. 205
Author(s):  
REZA GHADERI ◽  
AKBAR KAREGAR ◽  
ESMAEIL MIRAEIZ ◽  
ABBAS MOKARAM HESAR

The list of plant parasitic nematodes of the family Tylenchulidae, collected from Iran, is updated. Forty-one species belonging to five genera and three subfamilies are included in the list. Data for seven species of Paratylenchus are added, of which two species—P. perminimus and P. salubris—are new records for the Iranian nematofauna. The list of species, further information on their morphometrics, references to full or partial descriptions, associated plants, geographical distribution and some taxonomic remarks are provided. More detailed studies on some doubtful populations are added. Information on the taxonomic position of species in different classification schemes, as well as the preferences of some species for certain climatic conditions or ecological niches is provided. 


Polar Biology ◽  
2020 ◽  
Vol 43 (10) ◽  
pp. 1655-1661
Author(s):  
Łukasz Flis ◽  
Franciszek Wojciech Kornobis ◽  
Magdalena Kubicz ◽  
Jón Guðmundsson

Abstract The plant-parasitic nematodes of Iceland are poorly understood. To address this, a study of the nematodes of the families Criconematidae and Hemicycliophoridae was performed in 2015. Soil samples were taken from underneath various host plants in different locations in Iceland. The identification was performed on the basis of the general morphology and subsequently confirmed by molecular markers (D2-D3 28S rDNA). The study revealed the presence of nematode specimens belonging to four species of the family Criconematidae: Criconemoides amorphus, Criconema demani, Mesocriconema xenoplax and Mesocriconema curvatum, as well as one species Hemicycliophora conida of the family Hemicycliophoridae. To our knowledge, this is the first record of the occurrence of these nematode species in Iceland. The species identified are economically important plant-parasitic nematodes of likely interest to—among others—Icelandic plant protection professionals. This report broadens our knowledge of Iceland’s nematode biodiversity; moreover, morphological analyses and molecular data may contribute to better understanding the origin of nematode species on the island of Iceland.


Nematology ◽  
2020 ◽  
pp. 1-13
Author(s):  
Reza Ghaderi

Summary Nematodes are the most abundant metazoan organisms in soils. Plant-parasitic nematodes are a component of nematode communities. Biomass calculation is an important step to link biological communities to ecosystem functioning and services. In the present study, the biomass (fresh weight) of plant-parasitic nematodes was calculated based on a database with taxon-specific body-size values (length and the ratio of length to the greatest body diam.) using publicly available literature. In total, 1653 reported populations worldwide belonging to 890 species from 115 genera of all the families in the infraorder Tylenchomorpha, as well as Longidoridae (order Dorylaimida) and Trichodoridae (order Triplonchida), were included in the calculations. In each of the included genera and families, biomass was estimated for different life stages. The results revealed that certain families should not be treated as an entity for the purposes of ecological studies as they contain different biomass values that may confer different effects on their ecosystems. Members of the family Dolichodoridae sensu lato should be treated as four separate families, viz. Dolichodoridae sensu stricto, Belonolaimidae, Merliniidae and Telotylenchidae. Members of the families Anguinidae, Pratylenchidae and Tylenchulidae should also each be grouped into subcategories on the basis of their body shape (vermiform, fusiform, obese or swollen). The results of the present work may be helpful in studies on nematode community structure, in particular to estimate respiration, assimilation and metabolic footprints of plant-parasitic nematodes.


2010 ◽  
Vol 47 (3) ◽  
pp. 139-146
Author(s):  
V. Čermák ◽  
M. Renčo

Abstract The family Paratylenchidae (Paratylenchus, Gracilacus) belonging to the suborder Criconematina Siddiqi, 1980 including several others families: Criconematidae Taylor, 1936, Hemicycliophoridae Skarbilovich, 1959, Shaeronematidae Raski & Sher, 1952 and Tylenchulidae Skarbilovich, 1947. Members of these families are parasites of higher plants with a higher abundance in perennial cultural plants. Generally we can consider members of the suborder Criconematina as numerous, adaptable, more or less specialized plant parasitic nematodes occurring worldwide. The main common features of specimens of this suborder are relatively long and robust stylet and small body size. This combination enabled them to inhabit also very poor sites in considerable numbers where other nematodes have no chance. A stylet of Paratylenchus nematodes is from 10 to 40 μm of length, the Gracilacus nematodes from 40 to 120 μm of length. The nematodes of the genus Paratylenchus with shorter stylet attack and damaged the cuticular cells of host roots, however, the nematodes of the genus Gracilacus with the longer stylet are able to damage a deeper level of plant roots. Presented review should serve as a list and an outline of what was by some members of the genera Paratylenchus and Gracilacus previously published in connection with trees and grassland.


EDIS ◽  
2017 ◽  
Vol 2017 (2) ◽  
pp. 8
Author(s):  
Zane Grabau

This 8-page fact sheet written by Zane J. Grabau and published in January 2017 by the UF Department of Entomology and Nematology explains how to diagnose and manage nematode problems in cotton production.­http://edis.ifas.ufl.edu/ng015


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