Do Oil and Gas Lease Stipulations in the Northwestern Gulf of Mexico Need Expansion to Better Protect Vulnerable Coral Communities? How Low Relief Habitats Support High Coral Biodiversity

The continental shelf of the northwestern Gulf of Mexico harbors extensive reefs and banks that support diverse coral reefs and mesophotic communities. Mesophotic communities range in depth from 40 to 200 m and, in this region, foster some of the densest coral forests [aggregations of mesophotic octocoral, antipatharian, and branching stony coral communities] reported in published literature (10.23 ± 9.31 col/m2). The geologic features underlying the exposed substrates that harbor mesophotic communities are targeted for extensive hydrocarbon exploration and extraction, as they often contain oil and/or natural gas. The Bureau of Ocean Energy Management regulates offshore energy development in the United States and is tasked with protecting sensitive biological communities from impacts related to oil and gas activities. This study analyzed alpha and beta diversity of mesophotic coral forests on fourteen topographic banks in the northwestern Gulf of Mexico. The objective of the study was to examine differences in structure and community in relation to lease stipulations established by the Bureau of Ocean and Energy Management. It was determined that dense and diverse mesophotic coral forests and carbonate producers exist in present regulatory zones that prohibit oil and gas activities; however, the coral communities exist in higher densities, diversity, and richness in low relief substrates outside of these regulatory zones. Our findings suggest low relief hard substrates serve as important habitat for mesophotic coral forests; thus, we suggest the expansion of current stipulations should be considered to provide better protection to vulnerable coral communities on low relief features. Furthermore, additional studies to refine the relationship between low relief structures and biodiversity are needed to develop more meaningful habitat definitions to support resource management and improve resource protection in the future.

Recent developments in the synthesis and anti-cancer activity of acridine and xanthine-based molecules

Cancer is the uncontrolled growth and development of abnormal cells which is a major cause of death in both advanced and emerging countries. Although currently chemotherapy is most broadly used among an extensive range of anti-cancer therapies, it includes many demerits, such as highly toxic, side-effects, expensive and partial lack of targeting specificity. So the design and synthesis of new molecules that perform specifically on target proteins in tumor cells is a focus of contemporary research. So many researchers aim for new drugs that will be more efficient, more selective, and less toxic. Because of the interesting structures and significant biological profile, naturally occurring acridines and xanthines as well as their analogues have attracted considerable interest in researchers and technologists. Natural and synthetic acridine derivatives form a significant category of heterocycles having nitrogen that is of considerable interest for organic chemists and biological communities due to their attractive anti-cancer activity. Another important class of therapeutic agents with diverse biological properties including cytotoxic effects is xanthine derivatives which are collectively called xanthines (a group of alkaloids). Among many significant molecules based on the structure of the purine, there is a group of natural xanthines, involving theobromine, caffeine, and theophylline and analogues of xanthine display anti-cancer activity. Hence the present chapter wishes to concentrate the attention on the synthesis and anti-cancer activity of acridine and xanthine-based compounds brilliantly.

Research on Relationships between the Pigment of Dunhuang Mogao Grottoes Frescoes and Ecological Microorganism

Dunhuang Mogao Grottoes is one of the largest art treasures in the world. She has a large number of murals, sculptures, beautiful and vivid; There are precious Buddhist scriptures, documents, noble and elegant. Spanning more than 1,600 years, the Mogao Grottoes show the world the extensive and profound Chinese culture with a long history. But over time, the murals in the Mogao Grottoes have also changed a lot. Thousands of years of wind and rain erosion, changes in the surrounding environment, and the influence of various biological communities have caused serious color changes and fading of murals in Mogao Grottoes. To slow down the color change of Dunhuang frescoes, protection measures should be taken from the perspective of ecological microorganisms. At present, Cladosporium, Planococcus, Phoma, Chaetomium, and other strains have caused serious discoloration or discoloration of murals to a certain extent. This paper studies the main color of Dunhuang frescoes, red, and summarizes the discoloration factors and mechanism of red lead. On this level, one should try to keep the murals and control the indoor temperature. Humidity, people, and other factors slow the fading of the murals. But these are often insufficient to protect the integrity of the murals, so we have conducted a review of the literature to provide an updated overview of the available evidence on the subject.

A note about density staircases in the Gulf of Naples : 20 years of persistent weak salt-fingering layers in a coastal area

This is a short communication about the inter-annual recurring presence at the coastal site in the Gulf of Naples of density staircases visible below the mixed surface layer of the water-column, from the end of summer to the beginning of winter, each year during nearly two decades of survey (2001 to 2020). We repetitively observe sequences from 1 to 4 small vertical staircases structures (~ 3 m thick) in the density profiles (~ Δ0.2 kg.m-3), located between 10 m to 50 m deep below the seasonal mixed layer depth. We interpret these vertical structures as the result of double diffusive processes that could host salt-fingering regime (SF) due to warm salty water parcels overlying on relatively fresher and colder layers. This common feature of the Mediterranean basin (i.e., the thermohaline staircases of the Tyrrhenian sea) may sign here for the lateral intrusions of nearshore water masses. These stably stratified layers are characterized by density ratio Rρ 5.0 to 10.0, slightly higher than the critical range (1.0 - 3.0) generally expected for fully developed salt-fingers. SF mixing, such as parameterized (Zhang et al., 1998), appears to inhibit weakly the effective eddy diffusivity with negative averaged value (~ - 1e-8 m2.s-1). A quasi 5-year cycle is visible in the inter-annual variability of the eddy diffusivity associated to SF, suggesting a decadal modulation of the parameters regulating the SF regime. Even contributing weakly to the turbulent mixing of the area, we hypothesis that SF could influence the seasonal stratification by intensifying the density of deep layers. Downward transfer of salt could have an impact on the nutrient supply for the biological communities, that remains to be determined.

Invasion and Dispersion of the Exotic Species Procambarus clarkii (Decapoda Cambaridae) in Yeongsan River Basin, South Korea

The introduction of exotic species negatively affects the distribution and interactions within local biological communities in an ecosystem and can threaten ecosystem health. This study aimed to provide the basic data required to manage P. clarkii in the Yeongsan River basin. We identified the dispersion pattern and evaluated the ecosystem risk of this newly introduced species. The distribution survey investigated Procambarus clarkii populations at 25 sites in the Yeongsan River basin over a four-year period. The initial introduction occurred in Jiseok Stream. The larvae of P. clarkii were most abundant in areas with a dense aquatic plant cover, whereas adults preferred silt/clay areas. The alterations in the water flow by the river refurbishment project (carried out in 2012) increased their preferred habitats and contributed to P. clarkii dispersion. However, stable isotope analysis showed that the dispersion has had little effect on the freshwater ecosystem. The interrelationship between P. clarkii (i.e., larvae and adults) and other biological communities has been limited. Although the rapid dispersion by P. clarkii in the Yeongsan River basin has not impacted the freshwater ecosystem, further ecological information is required on how to manage P. clarkii beyond this early stage of invasion.

Effects of parasitism on antipredatory responses and defensive behaviors in the subterranean rodent Ctenomys talarum.

Predation represents an important evolutionary force shaping specific adaptations. Prey organisms present behavioral adaptations that allow them to recognize, avoid and defend themselves from their predators. In addition to predation, there is a growing consensus about the role of parasitism in the structuring of biological communities. In vertebrates, the effects on hosts include changes in daily activity, feeding, mate selection, reproduction, and modifications in responses to environmental stimuli. These behavioral variations can benefit the parasite (parasitic manipulation), benefit the host, or appear as a side effect of the infection. We evaluated the influence of parasitism on the behavioral and physiological response of Ctenomys talarum (Thomas 1898) to predator cues. We found that individuals exposed to cat odors and immobilization entered less often and stayed less time in the transparent arms of elevated maze, exhibiting a preference for protected areas (anxiogenic response). Additionally, we evaluated if the presence of parasites affected antipredatory behaviors in tuco-tucos (naturally parasitized, deparasitized or inoculated with Eimeria sp.). We did not find differences among the groups as regards responses to predator cues. Therefore, while exposure to predator cues triggered a stress response, the manipulation of parasite loads did not modify homeostasis under these experimental conditions.

Water repellency decreases with increasing carbonate content and pH for different biocrust types on sand dunes

Biocrusts are biological communities that occupy the soil surface, accumulate organic matter and mineral particles and hence strongly affect the properties of the soils they cover. Moreover, by affecting water repellency, biocrusts may cause a preferential infiltration of rainwater, with a high impact on the formation of local water pathways, especially for sand dunes. The aim of this study is to shed light on the connections between water repellency and pH, carbonate and organic matter content in two dune ecosystems with different biocrust types. For this, we used contact angle measurements, gas volumetric carbonate determination and organic matter characterization via FT-IR and TOF-SIMS. In both ecosystems, moss-dominated biocrusts showed higher water repellency and higher amounts of organic matter compared to algal or cyanobacterial biocrusts. Surprisingly, the biocrusts of the two dune systems did not show differences in organic matter composition or organic coatings of the mineral grains. Biocrusts on the more acidic dunes showed a significantly higher level of water repellency as compared to higher carbonate containing dunes. We conclude that the driving factor for the increase in water repellency between cyanobacterial and moss-dominated biocrusts within one study site is the content of organic matter. However, when comparing the different study sites, we found that higher amounts of carbonate reduced biocrust water repellency.

Some Biogeochemical Characteristics of the Trace Element Bioaccumulation in the Benthic Fauna of the Piip Volcano (The Southwestern Bering Sea)

The Piip Volcano is a submarine volcanic edifice occupying the central part of the Volcanologists Massif in the southwestern Bering Sea, with two tops, southern and northern. The minimum depth of the northern top is located at 368 m, and of the southern at 464 m. Active hydrothermal venting occurring at both summits of the volcano supports diverse biological communities, including animals specific for chemosynthetic habitats. In benthic organisms inhabiting the northern and southern tops of the Piip Volcano, for the first time, we examined distribution patterns of the following trace elements: titanium, vanadium, chromium, manganese, iron, nickel, copper, zinc, arsenic, selenium, zirconium, molybdenum, silver, cadmium, antimony, barium, tungsten, lead, bismuth, and uranium. The element contents were quantified by the ICP-MS. Total carbon (TC) and total inorganic carbon (TIC) were determined using a Shimadzu TOC-L-CPN and mineral composition of sediment was determined using the XRD. In the water of the biotope from the northern top, concentrations of Mn, Zn, Ag, Cd, Sb, W, Pb were 2–6 times, and Ba was 50 times higher than those from the southern top. This was attributed to the lower temperature of fluids emanating at the southern top. An abundant population of Calyptogena pacifica (Bivalvia: Vesicomyidae: Pliocardiinae) was found only at the southern top. The main target of most trace elements, such as Fe, V, Cr, Co, Ni, Zn, As, Mo, Ag, Cd, W, Pb, Bi, and U were the soft parts of Calyptogena pacifica (with high TOC content, on average 53.1% in gills and 49.6% in the rest of the body). Gills were characterized by particular high contents (>100 µg g-1 dry w.) of Zn, Cd, Fe, Ni, Cu, and Pb, which can form sulphides or be associated with them. Shells of C. pacifica, as well as Brachiopoda, were depleted in these elements, as well as tissues of the carnivores Paguridae (Crustacea) and Actiniaria (Anthozoa). In suspension feeders from both tops, the lower contents of most elements were detected. Estimation of Biological Concentration Factor (BCF) for most elements varied from 102 to 104, reaching n105 for Ni, Zn, Ag, Ca, and Pb. A significant difference in BCF values between Fe and Mn was revealed.

Hierarchical landform delineation for the habitats of biological communities on the Korean Peninsula

Landforms determine the locations of particular biological communities based on their components and spatial positions. This study hierarchically classified the topographic spaces serving as habitats for biological communities in the Korean Peninsula and established the habitat types that occur on the classified landform types. We classified landform types by applying cell-based modeling, map algebra, and spatial query techniques to spatial data, including digital elevation model (DEM), Sentinel 2 image, land use, and field survey data to model their ecological characteristics. Landforms were classified into four categories (designated Category 1 through 4) according to their spatial scale based on topographical characteristics such as mountains, plains, alluvial landforms, coastal landforms, islands, and special areas (Baekdudaegan, DMZ), which are found throughout the Korean Peninsula. The landforms of the Korean Peninsula were classified into 47 subcategories in Category 1, 16 in Category 2, 36 in Category 3, and 63 in Category 4. There were 62 main types of habitats that were classified based on their topographic spatial units, and there were 437 types of sub-habitats, for which soil weathering, biodiversity, and geodiversity were combined with the main habitat types. When factor analysis was conducted for the environmental factors used to determine the main and sub-habitats, the first primary components were temperature-related factors, followed by biodiversity, geodiversity, aspect, and slope. When the indicator species were analyzed by habitat type, indicator species diversity was high in Jeju Province, Gangwon Province, and Gaema Plateau. Based on these results, landform elements for species habit conservation were assigned conservation values and classified into (I) absolute conservation areas, (II) transition areas, and (III) areas for coexistence with humans. Topographic spaces are being degraded as biological habitats as a result of climate change and human development; our proposed classifications can be applied to the conservation of landforms and biodiversity.

The social architecture of an in-depth cellular protein interactome

Nearly all cellular functions are mediated by protein-protein interactions and mapping the interactome provides fundamental insights into the regulation and structure of biological systems. In principle, affinity purification coupled to mass spectrometry (AP-MS) is an ideal and scalable tool, however, it has been difficult to identify low copy number complexes, membrane complexes and those disturbed by protein-tagging. As a result, our current knowledge of the interactome is far from complete, and assessing the reliability of reported interactions is challenging. Here we develop a sensitive, high-throughput, and highly reproducible AP-MS technology combined with a quantitative two-dimensional analysis strategy for comprehensive interactome mapping of Saccharomyces cerevisiae. We reduced required cell culture volumes thousand-fold and employed 96-well formats throughout, allowing replicate analysis of the endogenous green fluorescent protein (GFP) tagged library covering the entire expressed yeast proteome. The 4159 pull-downs generated a highly structured network of 3,909 proteins connected by 29,710 interactions. Compared to previous large-scale studies, we double the number of proteins (nodes in the network) and triple the number of reliable interactions (edges), including very low abundant epigenetic complexes, organellar membrane complexes and non-taggable complexes interfered by abundance correlation. This nearly saturated interactome reveals that the vast majority of yeast proteins are highly connected, with an average of 15 interactors, the majority of them unreported so far. Similar to social networks between humans, the average shortest distance is 4.2 interactions. A web portal (www.yeast-interactome.org) enables exploration of our dataset by the network and biological communities and variations of our AP-MS technology can be employed in any organism or dynamic conditions.