scholarly journals Dynamics of inbreeding depression due to deleterious mutations in small populations: mutation parameters and inbreeding rate

1999 ◽  
Vol 74 (2) ◽  
pp. 165-178 ◽  
Author(s):  
JINLIANG WANG ◽  
WILLIAM G. HILL ◽  
DEBORAH CHARLESWORTH ◽  
BRIAN CHARLESWORTH
Keyword(s):  
Inbreeding Depression ◽  
Genetic Drift ◽  
Ancestral Population ◽  
Small Populations ◽  
Weak Selection ◽  
Recessive Mutations ◽  
Rate Of Decay ◽  
Inbreeding Rate ◽  
Lethal Equivalents ◽  
Reproductive Rates

A multilocus stochastic model is developed to simulate the dynamics of mutational load in small populations of various sizes. Old mutations sampled from a large ancestral population at mutation–selection balance and new mutations arising each generation are considered jointly, using biologically plausible lethal and deleterious mutation parameters. The results show that inbreeding depression and the number of lethal equivalents due to partially recessive mutations can be partly purged from the population by inbreeding, and that this purging mainly involves lethals or detrimentals of large effect. However, fitness decreases continuously with inbreeding, due to increased fixation and homozygosity of mildly deleterious mutants, resulting in extinctions of very small populations with low reproductive rates. No optimum inbreeding rate or population size exists for purging with respect to fitness (viability) changes, but there is an optimum inbreeding rate at a given final level of inbreeding for reducing inbreeding depression or the number of lethal equivalents. The interaction between selection against partially recessive mutations and genetic drift in small populations also influences the rate of decay of neutral variation. Weak selection against mutants relative to genetic drift results in apparent overdominance and thus an increase in effective size (Ne) at neutral loci, and strong selection relative to drift leads to a decrease in Ne due to the increased variance in family size. The simulation results and their implications are discussed in the context of biological conservation and tests for purging.

scholarly journals Genetic Allee effects and their interaction with ecological Allee effects

2016 ◽  
Author(s):  
Meike J. Wittmann ◽  
Hanna Stuis ◽  
Dirk Metzler
Keyword(s):  
Population Size ◽  
Inbreeding Depression ◽  
Survival Probability ◽  
Allee Effect ◽  
Extinction Risk ◽  
List Type ◽  
Small Populations ◽  
Allee Effects ◽  
Deleterious Mutations ◽  
Lethal Equivalents

SummaryIt is now widely accepted that genetic processes such as inbreeding depression and loss of genetic variation can increase the extinction risk of small populations. However, it is generally unclear whether extinction risk from genetic causes gradually increases with decreasing population size or whether there is a sharp transition around a specific threshold population size. In the ecological literature, such threshold phenomena are called “strong Allee effects” and they can arise for example from mate limitation in small populations.In this study, we aim to a) develop a meaningful notion of a “strong genetic Allee effect”, b) explore whether and under what conditions such an effect can arise from inbreeding depression due to recessive deleterious mutations, and c) quantify the interaction of potential genetic Allee effects with the well-known mate-finding Allee effect.We define a strong genetic Allee effect as a genetic process that causes a population’s survival probability to be a sigmoid function of its initial size. The inflection point of this function defines the critical population size. To characterize survival-probability curves, we develop and analyze simple stochastic models for the ecology and genetics of small populations.Our results indicate that inbreeding depression can indeed cause a strong genetic Allee effect, but only if individuals carry sufficiently many deleterious mutations (lethal equivalents) on average and if these mutations are spread across sufficiently many loci. Populations suffering from a genetic Allee effect often first grow, then decline as inbreeding depression sets in, and then potentially recover as deleterious mutations are purged. Critical population sizes of ecological and genetic Allee effects appear to be often additive, but even superadditive interactions are possible.Many published estimates for the number of lethal equivalents in birds and mammals fall in the parameter range where strong genetic Allee effects are expected. Unfortunately, extinction risk due to genetic Allee effects can easily be underestimated as populations with genetic problems often grow initially, but then crash later. Also interactions between ecological and genetic Allee effects can be strong and should not be neglected when assessing the viability of endangered or introduced populations.

Evolutionary Conservation Biology

2001 ◽  
Author(s):  
Philip W. Hedrick
Keyword(s):  
Genetic Variation ◽  
Endangered Species ◽  
Inbreeding Depression ◽  
Genetic Drift ◽  
Conservation Biology ◽  
The Other ◽  
Small Populations ◽  
Desert Bighorn Sheep ◽  
Endangered Fish ◽  
Evolutionary Aspects

Conservation biology as a discipline focused on endangered species is young and dates only from the late 1970s. Although conservation of endangered species encompasses many different biological disciplines, including behavior, ecology, and genetics, evolutionary considerations always have been emphasized (e.g., Frankel and Soule 1981). Many of the applications of evolutionary concepts to conservation are ones related to genetic variation in small or subdivided populations. However, the critical status of many endangered species makes both more precision and more caution necessary than the general findings for evolutionary considerations. On the other hand, the dire situations of many endangered species often require recommendations to be made on less than adequate data. Overall, one can think of the evolutionary aspects of conservation biology as an applied aspect of the evolution of small populations with the important constraint that any conclusions or recommendations may influence the actual extinction of the populations or species under consideration. From this perspective, all of the factors that influence continuing evolution (i.e., selection, inbreeding, genetic drift, gene flow, and mutation; e.g., Hedrick 2000) are potentially important in conservation. The evolutionary issues of widest concern in conservation biology—inbreeding depression and maintenance of genetic variation— can be seen in their simplest form as the joint effects of inbreeding and selection, and of genetic drift and mutation, respectively. However, even in model organisms such as Drosophila, the basis of inbreeding depression and the maintenance of genetic variation are not clearly understood. In addition, findings from model laboratory organisms may not provide good insight into problems in many endangered species, the most visible of which are generally slowly reproducing, large vertebrates with small populations. Here we will first focus on introductions to two important evolutionary aspects of conservation biology: the units of conservation and inbreeding depression. Then, we will discuss studies in two organisms as illustrations of these and related principles—an endangered fish species, the Gila topminnow, and desert bighorn sheep—to illustrate some evolutionary aspects of conservation. In the discussion, we will mention some of the other evolutionary topics that are relevant to conservation biology.

Inbreeding reduces reproductive fitness

2017 ◽  
Author(s):  
Richard Frankham ◽  
Jonathan D. Ballou ◽  
Katherine Ralls ◽  
Mark D. B. Eldridge ◽  
Michele R. Dudash ◽  
...  
Keyword(s):  
Natural Selection ◽  
Inbreeding Depression ◽  
Reproductive Fitness ◽  
Heterozygote Advantage ◽  
Small Populations ◽  
Population Bottlenecks ◽  
Risk Of Extinction ◽  
Survival And Reproduction

The harmful impacts of inbreeding are generally greater in species that naturally outbreed compared to those in inbreeding species, greater in stressful than benign environments, greater for fitness than peripheral traits, and greater for total fitness compared to its individual components. Inbreeding reduces survival and reproduction (i.e., it causes inbreeding depression), and thereby increases the risk of extinction. Inbreeding depression is due to increased homozygosity for harmful alleles and at loci exhibiting heterozygote advantage. Natural selection may remove (purge) the alleles that cause inbreeding depression, especially following inbreeding or population bottlenecks, but it has limited effects in small populations and usually does not completely eliminate inbreeding depression. Inbreeding depression is nearly universal in sexually reproducing organisms that are diploid or have higher ploidies.

scholarly journals Recombination Can Evolve in Large Finite Populations Given Selection on Sufficient Loci

Genetics ◽  
2003 ◽  
Vol 165 (4) ◽  
pp. 2249-2258 ◽  
Author(s):  
Mark M Iles ◽  
Kevin Walters ◽  
Chris Cannings
Keyword(s):  
Experimental Evidence ◽  
Genetic Drift ◽  
Finite Population ◽  
Selective Advantage ◽  
Indirect Selection ◽  
Small Populations ◽  
Finite Populations ◽  
Population Sizes ◽  
Population Recombination

AbstractIt is well known that an allele causing increased recombination is expected to proliferate as a result of genetic drift in a finite population undergoing selection, without requiring other mechanisms. This is supported by recent simulations apparently demonstrating that, in small populations, drift is more important than epistasis in increasing recombination, with this effect disappearing in larger finite populations. However, recent experimental evidence finds a greater advantage for recombination in larger populations. These results are reconciled by demonstrating through simulation without epistasis that for m loci recombination has an appreciable selective advantage over a range of population sizes (am, bm). bm increases steadily with m while am remains fairly static. Thus, however large the finite population, if selection acts on sufficiently many loci, an allele that increases recombination is selected for. We show that as selection acts on our finite population, recombination increases the variance in expected log fitness, causing indirect selection on a recombination-modifying locus. This effect is enhanced in those populations with more loci because the variance in phenotypic fitnesses in relation to the possible range will be smaller. Thus fixation of a particular haplotype is less likely to occur, increasing the advantage of recombination.

scholarly journals SELECTION AND INBREEDING DEPRESSION: EFFECTS OF INBREEDING RATE AND INBREEDING ENVIRONMENT

Evolution ◽  
2006 ◽  
Vol 60 (5) ◽  
pp. 1014-1022 ◽  
Author(s):  
William R. Swindell ◽  
Juan L. Bouzat
Keyword(s):  
Inbreeding Depression ◽  
Inbreeding Rate

scholarly journals Inbreeding depression due to mildly deleterious mutations in finite populations: size does matter

2000 ◽  
Vol 75 (1) ◽  
pp. 75-81 ◽  
Author(s):  
THOMAS BATAILLON ◽  
MARK KIRKPATRICK
Keyword(s):  
Population Size ◽  
Inbreeding Depression ◽  
Deleterious Mutation ◽  
Large Population ◽  
Genetic Load ◽  
Breeding Systems ◽  
Deleterious Mutations ◽  
Single Locus Analysis ◽  
Population Sizes ◽  
Inbreeding Rate

We studied the effects of population size on the inbreeding depression and genetic load caused by deleterious mutations at a single locus. Analysis shows how the inbreeding depression decreases as population size becomes smaller and/or the rate of inbreeding increases. This pattern contrasts with that for the load, which increases as population size becomes smaller but decreases as inbreeding rate goes up. The depression and load both approach asymptotic limits when the population size becomes very large or very small. Numerical results show that the transition between the small and the large population regimes is quite rapid, and occurs largely over a range of population sizes that vary by a factor of 10. The effects of drift on inbreeding depression may bias some estimates of the genomic rate of deleterious mutation. These effects could also be important in the evolution of breeding systems in hermaphroditic organisms and in the conservation of endangered populations.

scholarly journals Inbreeding depression and drift load in small populations at demographic disequilibrium

Evolution ◽  
2016 ◽  
Vol 71 (1) ◽  
pp. 81-94 ◽  
Author(s):  
Rachel B. Spigler ◽  
Konstantinos Theodorou ◽  
Shu-Mei Chang
Keyword(s):  
Inbreeding Depression ◽  
Small Populations

scholarly journals Whole-Genome Characterization of Embryonic Stage Inbreeding Depression in a Selfed Loblolly Pine Family

Genetics ◽  
2000 ◽  
Vol 155 (1) ◽  
pp. 337-348 ◽  
Author(s):  
David L Remington ◽  
David M O'Malley
Keyword(s):  
Inbreeding Depression ◽  
Loblolly Pine ◽  
Interval Mapping ◽  
Isolated Populations ◽  
Mapping Procedure ◽  
Deleterious Alleles ◽  
A Genome ◽  
Lethal Equivalents ◽  
Using Data ◽  
Pinus Taeda L

AbstractInbreeding depression is important in the evolution of plant populations and mating systems. Previous studies have suggested that early-acting inbreeding depression in plants is primarily due to lethal alleles and possibly epistatic interactions. Recent advances in molecular markers now make genetic mapping a powerful tool to study the genetic architecture of inbreeding depression. We describe a genome-wide evaluation of embryonic viability loci in a selfed family of loblolly pine (Pinus taeda L.), using data from AFLP markers from an essentially complete genome map. Locus positions and effects were estimated from segregation ratios using a maximum-likelihood interval mapping procedure. We identified 19 loci showing moderately deleterious to lethal embryonic effects. These loci account for >13 lethal equivalents, greater than the average of 8.5 lethal equivalents reported for loblolly pine. Viability alleles show predominantly recessive action, although potential overdominance occurs at 3 loci. We found no evidence for epistasis in the distribution of pairwise marker correlations or in the regression of fitness on the number of markers linked to deleterious alleles. The predominant role of semilethal alleles in embryonic inbreeding depression has implications for the evolution of isolated populations and for genetic conservation and breeding programs in conifers.

scholarly journals Mutation load decreases with haplotype age in wild Soay sheep

2021 ◽  
Author(s):  
M.A. Stoffel ◽  
S.E. Johnston ◽  
J.G. Pilkington ◽  
J.M Pemberton
Keyword(s):  
Inbreeding Depression ◽  
Purifying Selection ◽  
Small Population ◽  
First Year ◽  
Mutation Load ◽  
Soay Sheep ◽  
Recessive Mutations ◽  
Deleterious Alleles ◽  
Lower Population

AbstractRuns of homozygosity (ROH) are pervasive in diploid genomes and expose the effects of deleterious recessive mutations, but how exactly these regions contribute to variation in fitness remains unclear. Here, we combined empirical analyses and simulations to explore the deleterious effects of ROH with varying genetic map lengths in wild Soay sheep. Using a long-term dataset of 4,592 individuals genotyped at 417K SNPs, we found that inbreeding depression increases with ROH length. A 1% genomic increase in long ROH (>12.5cM) reduced the odds of first-year survival by 12%, compared to only 7% for medium ROH (1.56-12.5cM), while short ROH (<1.56cM) had no effect on survival. We show by forward genetic simulations that this is predicted: compared with shorter ROH, long ROH will have higher densities of deleterious alleles, with larger average effects on fitness and lower population frequencies. Taken together, our results are consistent with the idea that the mutation load decreases in older haplotypes underlying shorter ROH, where purifying selection has had more time to purge deleterious mutations. Finally, our study demonstrates that strong inbreeding depression can persist despite ongoing purging in a historically small population.

Sign in / Sign up

Export Citation Format

Share Document