scholarly journals Whole-Genome Characterization of Embryonic Stage Inbreeding Depression in a Selfed Loblolly Pine Family

Genetics ◽  
2000 ◽  
Vol 155 (1) ◽  
pp. 337-348 ◽  
Author(s):  
David L Remington ◽  
David M O'Malley
Keyword(s):  
Inbreeding Depression ◽  
Loblolly Pine ◽  
Interval Mapping ◽  
Isolated Populations ◽  
Mapping Procedure ◽  
Deleterious Alleles ◽  
A Genome ◽  
Lethal Equivalents ◽  
Using Data ◽  
Pinus Taeda L

AbstractInbreeding depression is important in the evolution of plant populations and mating systems. Previous studies have suggested that early-acting inbreeding depression in plants is primarily due to lethal alleles and possibly epistatic interactions. Recent advances in molecular markers now make genetic mapping a powerful tool to study the genetic architecture of inbreeding depression. We describe a genome-wide evaluation of embryonic viability loci in a selfed family of loblolly pine (Pinus taeda L.), using data from AFLP markers from an essentially complete genome map. Locus positions and effects were estimated from segregation ratios using a maximum-likelihood interval mapping procedure. We identified 19 loci showing moderately deleterious to lethal embryonic effects. These loci account for >13 lethal equivalents, greater than the average of 8.5 lethal equivalents reported for loblolly pine. Viability alleles show predominantly recessive action, although potential overdominance occurs at 3 loci. We found no evidence for epistasis in the distribution of pairwise marker correlations or in the regression of fitness on the number of markers linked to deleterious alleles. The predominant role of semilethal alleles in embryonic inbreeding depression has implications for the evolution of isolated populations and for genetic conservation and breeding programs in conifers.

scholarly journals Genotypic Stability Effects on Predicted Family Responses to Silvicultural Treatments in Loblolly Pine

1997 ◽  
Vol 21 (2) ◽  
pp. 84-89 ◽  
Author(s):  
Steven E. McKeand ◽  
Robert P. Crook ◽  
H. Lee Allen
Keyword(s):  
Pinus Taeda ◽  
Loblolly Pine ◽  
Growth Responses ◽  
Intensive Culture ◽  
Genotype By Environment ◽  
Silvicultural Treatments ◽  
Genotypic Stability ◽  
Superior Genotypes ◽  
Using Data ◽  
Pinus Taeda L

Abstract The lack of rank change in growth characteristics when open-pollinated families of loblolly pine (Pinus taeda L.) are planted on different sites in the Southeast has greatly simplified breeding for superior genotypes. Although family rank does not usually change, genotype by environment interactions (GxE) may be very important in operational deployment of families in regeneration programs. Using data from GxE trials and two site preparation-fertilization-herbicide trials, we estimated the growth that different families should achieve following application of these silvicultural practices. Better performing families tend to be most responsive to site changes (i.e. genetically unstable). Growth responses to silvicultural treatment will be overestimated if only the most responsive families are used in silvicultural research trials. Similarly, genetic gains will be overestimated if gain trials are planted on only the best sites or receive intensive culture. South. J. Appl. For. 21(2):84-89.

scholarly journals Simulation of pedigree vs. fully-informative marker based relationships matrices in a loblolly pine breeding population

2021 ◽  
Author(s):  
Adam R Festa ◽  
Ross Whetten
Keyword(s):  
Inbreeding Depression ◽  
Loblolly Pine ◽  
Genetic Gain ◽  
Field Experiments ◽  
Breeding Value ◽  
Genomic Relationship Matrix ◽  
Relationship Matrix ◽  
Genomic Relationship ◽  
Deleterious Alleles

Computer simulations of breeding strategies are an essential resource for tree breeders because they allow exploratory analyses into potential long-term impacts on genetic gain and inbreeding consequences without bearing the cost, time, or resource requirements of field experiments. Previous work has modeled the potential long-term implications on inbreeding and genetic gain using random mating and phenotypic selection. Reduction in sequencing costs has enabled the use of DNA marker-based relationship matrices in addition to or in place of pedigree-based allele sharing estimates; this has been shown to provide a significant increase in the accuracy of progeny breeding value prediction. A potential pitfall of genomic selection using genetic relationship matrices is increased coancestry among selections, leading to the accumulation of deleterious alleles and inbreeding depression. We used simulation to compare the relative genetic gain and risk of inbreeding depression within a breeding program similar to loblolly pine, utilizing pedigree-based or marker-based relationships over ten generations. We saw a faster rate of purging deleterious alleles when using a genomic relationship matrix based on markers that track identity-by-descent of segments of the genome. Additionally, we observed an increase in the rate of genetic gain when using a genomic relationship matrix instead of a pedigree-based relationship matrix. While the genetic variance of populations decreased more rapidly when using genomic-based relationship matrices as opposed to pedigree-based, there appeared to be no long-term consequences on the accumulation of deleterious alleles within the simulated breeding strategy.

The effect of spacing rectangularity on stem quality in loblolly pine plantations

2004 ◽  
Vol 34 (2) ◽  
pp. 498-501 ◽  
Author(s):  
Ralph L Amateis ◽  
Philip J Radtke ◽  
Gerald D Hansen
Keyword(s):  
Pinus Taeda ◽  
Loblolly Pine ◽  
Pine Plantations ◽  
Planting Density ◽  
Breast Height ◽  
Stem Quality ◽  
Using Data ◽  
Pinus Taeda L ◽  
Branch Size ◽  
Tree Stem

The effect of spacing rectangularity on tree stem quality was evaluated using data collected from a loblolly pine (Pinus taeda L.) spacing trial measured at age 19. In this trial, bole condition, branch size, and stem asymmetry were examined on plots with an initial planting density of 2240 trees/ha planted at slight (3:4) and greater (1:3) rectangular spacings to determine suitability for sawtimber production. Results indicated that rectangularity had no significant effect on survival or the number of potential sawtimber trees by age 19. While the 1:3 spacing treatment had a significantly larger maximum branch size than the 3:4 spacing treatment, it could not be attributed to the within-row or between-row direction. Additional measurements on stem diameter at breast height within and between rows failed to show stem asymmetry in the 1:3 spacing treatment. Consequently, rectangular spacings up to 1:3 should not have much impact on overall stem quality.

Biomass partitioning in a miniature-scale loblolly pine spacing trial

2009 ◽  
Vol 39 (2) ◽  
pp. 320-329 ◽  
Author(s):  
Matthew B. Russell ◽  
Harold E. Burkhart ◽  
Ralph L. Amateis
Keyword(s):  
Loblolly Pine ◽  
Total Mass ◽  
Spatial Scales ◽  
Biomass Partitioning ◽  
Below Ground ◽  
Initial Spacing ◽  
Using Data ◽  
Pinus Taeda L ◽  
Stand Conditions ◽  
Insight Into

Stand conditions influence the partitioning of biomass to stem, needle, branch, and root components. Using data from 4- to 6-year-old loblolly pine ( Pinus taeda L.) trees grown in a miniature-scale spacing trial, this study determined the effect of initial spacing on the biomass partitioning of loblolly pine. Multivariate analysis of variance procedures concluded that row and column spacing did not have a significant effect on the relative amount of biomass among tree components. Root/shoot and height/diameter ratios, however, differed across densities, indicating that allometric-based partitioning tradeoffs occurred. Results from the miniature-scale trees showed trends similar to those observed with mature-sized trees at operational spatial scales. Stem and woody roots were 70% and 14% of total mass, respectively. Since these trees were physiologically young at the time of harvest, the allocation of mass to needle continued to be a priority, accounting for 10% of the total mass. Initial planting spacing did not directly affect partitioning patterns; however, allometric ratios offered some evidence that partitioning may have changed between above- and below-ground tree components. This analysis offers insight into using principles from similarity analysis to analytically relate biomass partitioning from miniature to operational spatial scales.

scholarly journals A Consensus Map for Loblolly Pine (Pinus taeda L.). I. Construction and Integration of Individual Linkage Maps From Two Outbred Three-Generation Pedigrees

Genetics ◽  
1999 ◽  
Vol 151 (1) ◽  
pp. 321-330 ◽  
Author(s):  
Mitchell M Sewell ◽  
Bradley K Sherman ◽  
David B Neale
Keyword(s):  
Pinus Taeda ◽  
Loblolly Pine ◽  
Fragment Length Polymorphism ◽  
Random Amplified Polymorphic Dna ◽  
Mapping Function ◽  
Genetic Maps ◽  
Linkage Data ◽  
Linkage Maps ◽  
Consensus Map ◽  
Pinus Taeda L

Abstract A consensus map for loblolly pine (Pinus taeda L.) was constructed from the integration of linkage data from two unrelated three-generation outbred pedigrees. The progeny segregation data from restriction fragment length polymorphism, random amplified polymorphic DNA, and isozyme genetic markers from each pedigree were recoded to reflect the two independent populations of parental meioses, and genetic maps were constructed to represent each parent. The rate of meiotic recombination was significantly greater for males than females, as was the average estimate of genome length for males {1983.7 cM [Kosambi mapping function (K)]} and females [1339.5 cM(K)]. The integration of individual maps allows for the synthesis of genetic information from independent sources onto a single consensus map and facilitates the consolidation of linkage groups to represent the chromosomes (n = 12) of loblolly pine. The resulting consensus map consists of 357 unique molecular markers and covers ∼1300 cM(K).

Long-term effects of stand density management and genotype on wood properties of loblolly pine (Pinus taeda L.) in the mid-South USA

2021 ◽  
Vol 491 ◽  
pp. 119176
Author(s):  
Michael A. Blazier ◽  
Thomas Hennessey ◽  
Laurence Schimleck ◽  
Scott Abbey ◽  
Ryan Holbrook ◽  
...  
Keyword(s):  
Pinus Taeda ◽  
Loblolly Pine ◽  
Stand Density ◽  
Wood Properties ◽  
Long Term Effects ◽  
Stand Density Management ◽  
Pinus Taeda L

Quantitative Trait Loci for the Monoamine-Related Traits Heart Rate and Headless Behavior inDrosophila melanogaster

Genetics ◽  
2001 ◽  
Vol 157 (1) ◽  
pp. 283-294 ◽  
Author(s):  
Kristie Ashton ◽  
Ana Patricia Wagoner ◽  
Roland Carrillo ◽  
Greg Gibson
Keyword(s):  
Heart Rate ◽  
Genetic Variation ◽  
Recombinant Inbred Lines ◽  
Model Organism ◽  
Interval Mapping ◽  
Activity Levels ◽  
Environmental Variance ◽  
Genome Wide ◽  
A Genome ◽  
Monoamine Receptors

AbstractDrosophila melanogaster appears to be well suited as a model organism for quantitative pharmacogenetic analysis. A genome-wide deficiency screen for haploinsufficient effects on prepupal heart rate identified nine regions of the genome that significantly reduce (five deficiencies) or increase (four deficiencies) heart rate across a range of genetic backgrounds. Candidate genes include several neurotransmitter receptor loci, particularly monoamine receptors, consistent with results of prior pharmacological manipulations of heart rate, as well as genes associated with paralytic phenotypes. Significant genetic variation is also shown to exist for a suite of four autonomic behaviors that are exhibited spontaneously upon decapitation, namely, grooming, grasping, righting, and quivering. Overall activity levels are increased by application of particular concentrations of the drugs octopamine and nicotine, but due to high environmental variance both within and among replicate vials, the significance of genetic variation among wild-type lines for response to the drugs is difficult to establish. An interval mapping design was also used to map two or three QTL for each behavioral trait in a set of recombinant inbred lines derived from the laboratory stocks Oregon-R and 2b.

scholarly journals Competition Effects on Growth and Crown Dimensions of Shortleaf and Loblolly Pine in Mature, Natural-Origin, Pine–Hardwood Mixtures of the Upper West Gulf Coastal Plain of Arkansas, USA: A Neighborhood Analysis

Forests ◽  
2021 ◽  
Vol 12 (7) ◽  
pp. 935
Author(s):  
Mohammad Bataineh ◽  
Ethan Childs
Keyword(s):  
Loblolly Pine ◽  
Species Abundance ◽  
Basal Area ◽  
Pinus Echinata ◽  
Shortleaf Pine ◽  
Species Identity ◽  
Linear Mixed Effects ◽  
Natural Origin ◽  
Pinus Taeda L ◽  
Crown Dimensions

The need for a comprehensive and mechanistic understanding of competition has never been more important as plants adapt to a changing environment and as forest management evolves to focus on maintaining and enhancing complexity. With the recent decline in shortleaf pine (Pinus echinata Mill.) land area, it is critical to determine the effects of competition on shortleaf pine and its performance against loblolly pine (Pinus taeda L.), the preferred planted replacement. We evaluate differences in shortleaf and loblolly pine 10 year mean basal area increment (BAI) and crown dimensions across a gradient of neighborhoods. Linear mixed-effects regression models were developed using BAI and several crown metrics as responses and crowding, competitor species abundance and identity, and initial size and species identity of focal tree as predictors. Crowding of focal trees negatively impacted BAI and crown size (p < 0.001, respectively). Although loblolly pine had three times higher BAI as compared to shortleaf pine within similar neighborhoods, BAI was variable, and the crowding effect did not differ between shortleaf and loblolly pine (p ranged from 0.51–0.99). Competitive impacts on focal trees did not differ by competitor identity (p ranged from 0.07–0.70). Distance-independent competition indices better explained the variation in BAI and horizontal crown metrics, while distance-dependent size ratios were more effective at evaluating vertical crown metrics. These findings highlight shortleaf pine competitive potential in mature, natural-origin stands and provide support for the restoration of pine–hardwood and hardwood–pine stratified mixtures as well as management of shortleaf pine at long rotations.

scholarly journals Loblolly Pine—Pushing the Limits of Growth

2001 ◽  
Vol 25 (2) ◽  
pp. 69-74 ◽  
Author(s):  
Bruce E. Borders ◽  
Robert L. Bailey
Keyword(s):  
Loblolly Pine ◽  
Annual Increment ◽  
Complete Control ◽  
Vegetation Control ◽  
Mechanical Site Preparation ◽  
Yield Production ◽  
The World ◽  
Intensively Managed ◽  
Pinus Taeda L ◽  
Production Areas

Abstract With mean annual increments up to 5.4 cords/ac/yr, six loblolly pine (Pinus taeda L.) research sites in Georgia produced yields on par with other results from intensively managed loblolly plantations around the world. Cultural treatments in the Georgia study include complete control of vegetation other than the planted pines with multiple applications of herbicide, annual fertilization, the combination of complete vegetation control and annual fertilization, and an intensive mechanical site preparation treatment. Complete vegetation control resulted in higher yield production at ages 10 to 12 yr than the intensive mechanical treatment at all locations. This regime also resulted in higher yield production than the annual fertilization treatment at four of six locations. Volume mean annual increment for 10- to 12-yr-old plantations with the combination treatment of complete vegetation control and annual fertilization ranged from 325 to 490 ft3/ac, growth rates comparable to those obtained at other high biomass production areas throughout the world. Our economic evaluation based on these results shows that 8 to 12% real rates of return are feasible from investments in intensive loblolly pine plantations in the southeastern United States. South. J. Appl. For. 25(2):69–74.

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