Local variability of taphonomic attributes in a parautochthonous assemblage: can taphonomic signature distinguish a heterogeneous environment?

1990 ◽  
Vol 64 (4) ◽  
pp. 648-658 ◽  
Author(s):  
George M. Staff ◽  
Eric N. Powell

Taphofacies have been based on the likelihood that considerable variability exists in taphonomic processes between different environments and that this variability produces predictable variations in taphonomic signature between assemblages. Three stations above storm wave base that differed little in sediment texture and depth were sampled on the inner continental shelf of central Texas. Taphonomic analysis revealed subtle gradients in sediment grain size and water depth that would not be revealed by most other analyses. These gradients may exist over very small spatial scales, equivalent to those within a single extensive outcrop. Not all taphonomic attributes are equally likely to be preserved in the fossil record. Those varying with depth in our study area, such as fragmentation and articulation, are more likely to be preserved than those documenting changes in sediment texture, such as variation in the frequency of dissolution features on the shells. Nevertheless, siting and sampling protocols are important when characterizing a taphofacies because within-habitat variation is potentially as large as between-habitat variation. Description of the average taphofacies for an environment must include documentation of the variation in taphonomic attributes within the sampled area because few conservative taphonomic attributes exist. Fragments, even those that are unidentifiable, retain significant taphonomic information and should not be ignored. Careful sampling should permit the simultaneous description of general taphofacies as well as the detection of important but unsuspected gradients in the environment.

2019 ◽  
Author(s):  
Casper Kraan ◽  
Barry L. Greenfield ◽  
Simon F. Thrush

Abstract. Understanding how the plants and animals that live in the seafloor vary in their spatial patterns of diversity and abundance is fundamental to gaining insight in the role of biodiversity in maintaining ecosystem functioning in coastal ecosystems, as well as advancing the modelling of species distributions under realistic assumptions. Yet, it is virtually unknown how the relationships between abundance patterns and different biotic and environmental processes change depending on spatial scales, which is mainly due to a lack of data. Within the project Spatial Organization of Species Distributions: Hierarchical and Scale-Dependent Patterns and Processes in Coastal Seascapes at the National Institute for Water and Atmospheric Research (NIWA) in New Zealand we collected multi-scale and high-resolution data on macrobenthic biodiversity. We found 146 species, i.e. bivalves, polychaetes and crustaceans (> 500 μm) that live hidden in marine sandflats, and collected point measurements of important environmental variables (sediment grain-size distributions, chlorophyll a concentration, and visible sandflat parameters) in three large intertidal Harbours (Kaipara, Tauranga and Manukau). In each Harbour we sampled 400 points for macrobenthic community composition and abundances, as well as the full set of environmental variables. Using an elaborate sampling design, we were able to cover scales from 30 centimetres to a maximal extent of 1 km. All data and extensive metadata are available from the data publisher PANGAEA via the persistent identifier https://doi.org/10.1594/PANGAEA.903448.


2010 ◽  
Vol 61 (9) ◽  
pp. 999 ◽  
Author(s):  
C. Cvitanovic ◽  
A. S. Hoey

The removal of macroalgae by herbivores is fundamental to the long-term persistence of coral reefs. Variation in macroalgal browsing has been documented across a range of spatial scales on coral reefs; however, few studies have examined the factors that influence within-habitat rates of herbivory. The aim of the present study was to quantify herbivory on two species of Sargassum across three bays on an inshore island in the central Great Barrier Reef (GBR), and to determine whether these removal rates were related to the benthic composition or herbivorous fish communities. Removal rates of Sargassum differed significantly among bays, with removal rates in the southern bay (66.9–83.0% per 3 h) being approximately double that of the two other bays (29.2–38.5% per 3 h). The removal rates displayed a direct relationship with the benthic community structure, in particular the cover of macroalgae and live plate corals. Although it is difficult to determine whether these relationships are related to the availability of food resources or the structural complexity of the substratum, they highlight the potential influence of benthic composition on ecological processes. Quantifying and understanding the drivers of herbivory across a range of spatial scales is essential to the future management of coral reefs.


Author(s):  
Fabio Stoch ◽  
Barbara Fiasca ◽  
Tiziana Di Lorenzo ◽  
Silvano Porfirio ◽  
Marco Petitta ◽  
...  

<p>In groundwater-fed springs, habitat characteristics are primarily determined by a complex combination of geomorphic features and physico-chemical parameters, while species assemblages are even more intricate. Springs host species either inhabiting the spring mouth, or colonizing spring habitats from the surface or from the aquifers which feed the springs. Groundwater species living in springs have been claimed as good candidates for identifying dual aquifer flowpaths or changes in groundwater pathways before reaching the spring outlets. However, the reliability of spring species as hydrological biotracers has not been widely investigated so far. Our study was aimed at analysing a large karstic spring system at three nested spatial scales in order: i) to assess, at whole spring system scale, the presence of a groundwater divide separating two aquifers feeding two spring units within a single spring system, by combining isotope analyses, physico-chemistry, and copepod distribution patterns; ii) to test, at vertical spring system scale, the effectiveness of copepods in discriminating surface and subsurface habitat patches within the complex mosaic spring environment; iii) to explore, at local spring unit level, the relative role of hydrochemistry and sediment texture as describers of copepod distribution among microhabitats. The results obtained demonstrated the presence of a hierarchical spatial structure, interestingly reflected in significant differences in assemblage compositions. Copepod assemblages differed between the two contiguous spring units, which were clearly characterized by their hydrochemistry and by significant differences in the groundwater flowpaths and recharge areas, as derived by the isotope analyses. The biological results suggested that stygobiotic species seem to be related to the origin of groundwater, suggesting their potential role as hydrological biotracers. At vertical scale, assemblage composition in surface and subsurface habitats was significantly different, both between spring units and among microhabitats, supporting strong habitat preferences of copepod species. At the smaller local scale, the response to habitat patchiness of subsurface copepod assemblages resulted in distribution patterns primarily defined by sediment texture, while the sensitivity to differences in hydrochemistry was negligible.</p>


Author(s):  
Zacchaeus G. Compson ◽  
Beverly McClenaghan ◽  
Gregory A. C. Singer ◽  
Nicole A. Fahner ◽  
Mehrdad Hajibabaei

Global biodiversity loss is unprecedented, and threats to existing biodiversity are growing. Given pervasive global change, a major challenge facing resource managers is a lack of scalable tools to rapidly and consistently measure Earth's biodiversity. Environmental genomic tools provide some hope in the face of this crisis, and DNA metabarcoding, in particular, is a powerful approach for biodiversity assessment at large spatial scales. However, metabarcoding studies are variable in their taxonomic, temporal, or spatial scope, investigating individual species, specific taxonomic groups, or targeted communities at local or regional scales. With the advent of modern, ultra-high throughput sequencing platforms, conducting deep sequencing metabarcoding surveys with multiple DNA markers will enhance the breadth of biodiversity coverage, enabling comprehensive, rapid bioassessment of all the organisms in a sample. Here, we report on a systematic literature review of 1,563 articles published about DNA metabarcoding and summarize how this approach is rapidly revolutionizing global bioassessment efforts. Specifically, we quantify the stakeholders using DNA metabarcoding, the dominant applications of this technology, and the taxonomic groups assessed in these studies. We show that while DNA metabarcoding has reached global coverage, few studies deliver on its promise of near-comprehensive biodiversity assessment. We then outline how DNA metabarcoding can help us move toward real-time, global bioassessment, illustrating how different stakeholders could benefit from DNA metabarcoding. Next, we address barriers to widespread adoption of DNA metabarcoding, highlighting the need for standardized sampling protocols, experts and computational resources to handle the deluge of genomic data, and standardized, open-source bioinformatic pipelines. Finally, we explore how technological and scientific advances will realize the promise of total biodiversity assessment in a sample—from microbes to mammals—and unlock the rich information genomics exposes, opening new possibilities for merging whole-system DNA metabarcoding with (1) abundance and biomass quantification, (2) advanced modeling, such as species occupancy models, to improve species detection, (3) population genetics, (4) phylogenetics, and (5) food web and functional gene analysis. While many challenges need to be addressed to facilitate widespread adoption of environmental genomic approaches, concurrent scientific and technological advances will usher in methods to supplement existing bioassessment tools reliant on morphological and abiotic data. This expanded toolbox will help ensure that the best tool is used for the job and enable exciting integrative techniques that capitalize on multiple tools. Collectively, these new approaches will aid in addressing the global biodiversity crisis we now face.


1994 ◽  
Vol 45 (3) ◽  
pp. 293 ◽  
Author(s):  
BG Long ◽  
IR Poiner

The infaunal benthos (>20 m) of the Gulf of Carpentaria was surveyed during November and December 1990. In all, 684 taxa were collected from 105 stations, each with three replicate 0.1-m2 grab samples (Smith-McIntyre grab). Trends in abundance and species richness were correlated with gulf-wide trends in sediment texture and depth. Highest abundance (20-153 individuals per 0.1 m2), wet-weight biomass (X=7.6 g per 0.1 m2) and species density (X=25.8 taxa per 0.1 m2) occurred in the sands and muddy sands along the eastern and south-eastern margins of the gulf. Lowest abundance (3.3-20.0 individuals per 0.1 m2), biomass (X=3.0 g per 0.1 m2) and species density (X=9.5 taxa per 0.1 m2) occurred in the muds and sandy muds in the centra, western and north-western gulf. Infaunal abundance and biomass were similar to those of other tropical continental shelves but were lower than those of some temperate-region shelves and upwelling areas. Species richness was also lower than in temperate areas of upwelling or high production. Scavengers/carnivores (44%) and deposit feeders (43%) numerically dominated throughout the gulf. Suspension feeding was less prevalent (13%), and few herbivores were found (< 1%). There was a trend in the proportion of deposit and suspension feeders that was related to sediment texture. Suspension feeding was highest in the muddy sands of the eastern and south-eastern gulf and lowest in the muds of the north-west. The proportion of deposit feeders was highest in muddy sediments and lowest in sandy sediments. Small (<5 mm) surface deposit feeders numerically dominated within this feeding mode. The 15 numerically dominant taxa were comprised mainly of opportunistic or second-stage colonizing taxa. Most had gulf-wide distribution patterns, but levels of abundance were correlated with sediment and depth. The infaunal benthic communities in the Gulf of Carpentaria appear to be regulated by physical factors of the environment that correlate with sediment grain size and depth.


2006 ◽  
Vol 86 (5) ◽  
pp. 1025-1034 ◽  
Author(s):  
Patricia A. Ramey ◽  
Dieter Fiege ◽  
Brian S. Leander

A new species of Polygordiidae, Polygordius jouinae sp. nov., along with its distribution, habitat, and reproduction is described. Polygordius jouinae sp. nov., the first North American Polygordius, is a dominant member of macrofaunal communities on the inner continental shelf, and in bays and harbours from Massachusetts to southern New Jersey. It is distinguished from most other Polygordius species by its non-inflated, heavily ciliated pygidium, absence of pygidial glands, and a conical (rather than rounded) prostomium. The 18S SSU rDNA from P. jouinae sp. nov. was sequenced and represents the first named Polygordius species with a DNA reference in GenBank. Spearman rank correlation of sediment grain size with density of P. jouinae sp. nov. at a New Jersey site showed that density was significantly (P<0.05; N=92) positively correlated with the proportion of medium to very coarse sand and negatively correlated with the fine sand fractions. Ecologically, P. jouinae sp. nov. is an important macrofaunal species given its widespread distribution and its fidelity for coarse sand habitats. Thus, its relative abundance may be useful as an indicator of changing sedimentary conditions.


Author(s):  
Luca Scapin ◽  
Matteo Zucchetta ◽  
Fabio Pranovi ◽  
Piero Franzoi

AbstractFisheries are a staple human activity supported by coastal lagoons. Together with water quality and trophic status, lagoon morphology is acknowledged as one of the main ecological drivers of fishery yields; however, the role of lagoon seascape structure is still poorly understood. This paper investigates how morphological variables, habitat distribution and seascape diversity and complexity affect yields of artisanal fishery performed with fyke nets in the Venice Lagoon (northern Adriatic Sea, Italy). Two spatial scales were considered in the analysis, with water quality parameters (temperature, salinity, dissolved oxygen, turbidity, water residence times, N, P and chlorophyll-a concentrations) being measured at a fine, fyke-net scale and morphological (average bottom elevation and sediment grain size) and habitat features (habitat proportion, diversity and complexity) being measured at a broader, seascape scale. Generalised linear mixed models were employed to model 8 years of nekton and green crab catches, disentangling the role of broad-scale morphology and seascape from that of fine-scale water quality. Broad-scale variables clearly influenced fishery target species. Among them, lagoon residents were associated with specific morphological and habitat characteristics, while marine migrants showed a stronger link with overall habitat diversity and complexity. This evidence emphasises how artisanal fishery in the Venice Lagoon relies on the conservation of morphological and habitat heterogeneity. Moreover, it highlights how habitat restoration performed at the seascape level should also be taken into account, in addition to controlling hydrology and water quality, when managing fishery resources in coastal lagoons.


2017 ◽  
Author(s):  
Florentine Riquet ◽  
Cathy Liautard-Haag ◽  
Lucy Woodall ◽  
Carmen Bouza ◽  
Patrick Louisy ◽  
...  

AbstractDiverging semi-isolated lineages either meet in narrow clinal hybrid zones, or have a mosaic distribution associated with environmental variation. Intrinsic reproductive isolation is often emphasized in the former and local adaptation in the latter, although both can contribute to isolation. Rarely these two patterns of spatial distribution are reported in the same study system. Here we report that the long-snouted seahorse Hippocampus guttulatus is subdivided into discrete panmictic entities by both types of hybrid zones. Along the European Atlantic coasts, a northern and a southern lineage meet in the southwest of France where they coexist in sympatry with little hybridization. In the Mediterranean Sea, two lineages have a mosaic distribution, associated with lagoon-like and marine habitats. A fifth lineage was identified in the Black Sea. Genetic homogeneity over large spatial scales contrasts with isolation maintained in sympatry or close parapatry at a fine scale. A high variation in locus-specific introgression rates provides additional evidence that partial reproductive isolation must be maintaining the divergence. Surprisingly, fixed differences between lagoon and marine populations in the Mediterranean Sea belong to the most differentiated SNPs between the two Atlantic lineages, against the genome-wide pattern of structure. These parallel outlier SNPs cluster on a single chromosome-wide island of differentiation. Since Atlantic lineages do not match the lagoon-sea habitat variation, genetic parallelism at the genomic island suggests a shared genetic barrier contributes to reproductive isolation in contrasting contexts -i.e. spatial vs. ecological. We discuss how a genomic hotspot of parallel differentiation could have evolved and become associated either with space or with a patchy environment in a single study system.


Author(s):  
John D. Thompson

Plant Evolution in the Mediterranean: Insights for conservation brings together a diverse literature on the Mediterranean flora in a detailed but synthetic account of plant evolutionary ecology. The central themes of ecological dynamics and evolutionary differentiation are developed at two spatial scales: habitat variation across the landscape and biogeographic processes across the Mediterranean. The history of the Mediterranean region is at the heart of this account and is described within a triptych that links geological and climatic history to the advent and history of human activities. The Mediterranean region is a hotspot of plant biodiversity, a key ingredient of which is its richness in endemic species. A primary question motivating this book concerns the role of historical factors and spatial environmental variation in the evolution of endemism. The Mediterranean landscape is a mosaic of ecological conditions, often with variation over short distances. A second focus is on the ecological and historical factors that mediate dispersal, reproduction, and adaptive trait variation in this mosaic landscape. With an ever-growing human footprint on the Mediterranean region, this book addresses a third major theme concerning the vulnerability and conservation of the flora. Alongside a traditional approach to rare species and protected area management, the book argues for the integration of the loss of evolutionary potential as a priority in conservation policy and practice. This accessible text is aimed at students and researchers in plant evolution, ecology, biogeography, and conservation science. It will be of interest to scientists and natural history societies worldwide.


Sign in / Sign up

Export Citation Format

Share Document