Distribution and validation of genotypic and phenotypic glyphosate and PPO-nhibitor resistance in Palmer amaranth (Amaranthus palmeri) from southwestern Nebraska

2020 ◽  
pp. 1-12 ◽  
Author(s):  
Maxwel C Oliveira ◽  
Darci A Giacomini ◽  
Nikola Arsenijevic ◽  
Gustavo Vieira ◽  
Patrick J Tranel ◽  
...  
Keyword(s):  
Cluster Analysis ◽  
Gene Amplification ◽  
Cropping Systems ◽  
Resistance Mechanism ◽  
Geographic Area ◽  
Glyphosate Resistance ◽  
Resistance Mechanisms ◽  
Palmer Amaranth ◽  
Resistance Evolution ◽  
Inhibitor Resistance

Abstract Failure to control Palmer amaranth with glyphosate and protoporphyrinogen IX oxidase (PPO)-inhibitor herbicides was reported across southwestern Nebraska in 2017. The objectives of this study were to 1) confirm and 2) validate glyphosate and PPO-inhibitor (fomesafen and lactofen) resistance in 51 Palmer amaranth accessions from southwestern Nebraska using genotypic and whole-plant phenotypic assay correlations and cluster analysis, and 3) determine which agronomic practices might be influencing glyphosate resistance in Palmer amaranth accessions in that location. Based on genotypic assay, 88% of 51 accessions contained at least one individual with amplification (>2 copies) of the 5-enolypyruvyl-shikimate-3-phosphate synthase (EPSPS) gene, which confers glyphosate resistance; and/or a mutation in the PPX2 gene, either ΔG210 or R128G, which endows PPO-inhibitor resistance in Palmer amaranth. Cluster analysis and high correlation (0.83) between genotypic and phenotypic assays demonstrated that EPSPS gene amplification is the main glyphosate resistance mechanism in Palmer amaranth accessions from southwestern Nebraska. In contrast, there was poor association between genotypic and phenotypic responses for PPO-inhibitor resistance, which was attributed to segregation for PPO-inhibitor resistance within these accessions and/or the methodology that was adopted herein. Genotypic assays can expedite the process of confirming known glyphosate and PPO-inhibitor resistance mechanisms in Palmer amaranth from southwestern Nebraska and other locations. Phenotypic assays are also a robust method for confirming glyphosate resistance but not necessarily PPO-inhibitor resistance in Palmer amaranth. Moreover, random forest analysis of glyphosate resistance in Palmer amaranth indicated that EPSPS gene amplification, county, and current and previous crops are the main factors influencing glyphosate resistance within that geographic area. Most glyphosate-susceptible Palmer amaranth accessions were found in a few counties in areas with high crop diversity. Results presented here confirm the spread of glyphosate resistance and PPO-inhibitor resistance in Palmer amaranth accessions from southwestern Nebraska and demonstrate that less diverse cropping systems are an important driver of herbicide resistance evolution in Palmer amaranth.

scholarly journals A Statewide Survey of PPO-Inhibitor Resistance and the Prevalent Target-Site Mechanisms in Palmer amaranth (Amaranthus palmeri) Accessions from Arkansas

Weed Science ◽  
2017 ◽  
Vol 66 (2) ◽  
pp. 149-158 ◽  
Author(s):  
Vijay K. Varanasi ◽  
Chad Brabham ◽  
Jason K. Norsworthy ◽  
Haozhen Nie ◽  
Bryan G. Young ◽  
...  
Keyword(s):  
Resistance Mechanism ◽  
Acetolactate Synthase ◽  
Resistance Mechanisms ◽  
Palmer Amaranth ◽  
Target Site ◽  
Evolution Of Resistance ◽  
Target Site Resistance ◽  
Novel Target ◽  
Als Inhibitors ◽  
Inhibitor Resistance

Palmer amaranth is one of the most problematic weeds in the midsouthern United States, and the evolution of resistance to protoporphyrinogen oxidase (PPO) inhibitors in biotypes already resistant to glyphosate and acetolactate synthase (ALS) inhibitors is a major cause of concern to soybean and cotton growers in these states. A late-season weed-escape survey was conducted in the major row crop–producing counties (29 counties) to determine the severity of PPO-inhibitor resistance in Arkansas. A total of 227 Palmer amaranth accessions were sprayed with fomesafen at 395 g ha−1to identify putative resistant plants. A TaqMan qPCR assay was used to confirm the presence of the ΔG210 codon deletion or the R128G/M (homologous to R98 mutation in common ragweed) target-site resistance mechanisms in thePPX2gene. Out of the 227 accessions screened, 44 were completely controlled with fomesafen, and 16 had only one or two severely injured plants (≥98% mortality) when compared with the 1986 susceptible check (100% mortality). The remaining 167 accessions were genotypically screened, and 82 (49%) accessions were found to harbor the ΔG210 deletion in thePPX2gene. The R128G was observed in 47 (28%) out of the 167 accessions screened. The mutation R128M, on the other hand was rare, found in only three accessions. About 13% of the accessions were segregating for both the ΔG210 and R128G mutations. Sixteen percent of the tested accessions had mortality ratings <90% and did not test positive for the ΔG210 or the R128G/M resistance mechanisms, indicating that a novel target or non–target site resistance mechanism is likely. Overall, PPO inhibitor–resistant Palmer amaranth is widespread in Arkansas, and the ΔG210 resistance mechanism is especially dominant in the northeast corridor, while the R128G mutation is more prevalent in counties near Memphis, TN.

Distribution of PPX2 Mutations Conferring PPO-Inhibitor Resistance in Palmer Amaranth Populations of Tennessee

2018 ◽  
Vol 32 (5) ◽  
pp. 592-596 ◽  
Author(s):  
J. Drake Copeland ◽  
Darci A. Giacomini ◽  
Patrick J. Tranel ◽  
Garret B. Montgomery ◽  
Lawrence E. Steckel
Keyword(s):  
Resistance Mechanisms ◽  
Palmer Amaranth ◽  
The Other ◽  
Group 14 ◽  
Row Crops ◽  
Site Of Action ◽  
Inhibitor Resistance ◽  
New Mutations

AbstractProtoporphyrinogen IX oxidase (PPO)–inhibiting herbicides (WSSA Group 14) have been used in agronomic row crops for over 50 yr. Broadleaf weeds, including glyphosate-resistant Palmer amaranth, have been controlled by this herbicide site of action PRE and POST. Recently, Palmer amaranth populations were reported resistant to PPO inhibitors in 2011 in Arkansas, in 2015 in Tennessee, and in 2016 in Illinois. Historically, the mechanism for this resistance involves the deletion of a glycine at position 210 (ΔG210) in a PPO enzyme encoded by the PPX2 gene; however, the ΔG210 deletion did not explain all PPO inhibitor–resistant Palmer amaranth in Tennessee populations. Recently, two new mutations within PPX2 (R128G, R128M) that confer resistance to PPO inhibitors were identified in Palmer amaranth. Therefore, research is needed to document the presence and distribution of the three known mutations that confer PPO inhibitor resistance in Tennessee. In 2017, a survey was conducted in 18 fields with Palmer amaranth to determine whether resistance existed and the prevalence of each known mutation in each field. Fomesafen was applied at 265 g ai ha–1 to Palmer amaranth infestations within each field to select for resistant weeds for later analysis. Where resistance was described (70% of surviving plants), the ΔG210 mutation was detected in 47% of resistant plants. The R128G mutation accounted for 42% of resistance, similar to the frequency of the ΔG210 mutation. The R128M mutation was less frequent than the other two mutations, accounting for only 10% of the resistance. All mutations detected in this study were heterozygous. Additionally, no more than one of the three PPX2 mutations were detected in an individual surviving plant. Similar to previous research, about 70% of PPO resistance was accounted for by these three known mutations, leaving about 30% of resistance not characterized in Tennessee populations. Survivors not showing the three known PPO mutations suggest that other resistance mechanisms are present.

Modeling Glyphosate Resistance Management Strategies for Palmer Amaranth (Amaranthus palmeri) in Cotton

2011 ◽  
Vol 25 (3) ◽  
pp. 335-343 ◽  
Author(s):  
Paul Neve ◽  
Jason K. Norsworthy ◽  
Kenneth L. Smith ◽  
Ian A. Zelaya
Keyword(s):  
Weed Management ◽  
Management Strategies ◽  
Resistance Management ◽  
Glyphosate Resistance ◽  
Palmer Amaranth ◽  
Case Scenario ◽  
Management Options ◽  
Worst Case ◽  
Resistance Risk ◽  
Resistance Evolution

A simulation model is used to explore management options to mitigate risks of glyphosate resistance evolution in Palmer amaranth in glyphosate-resistant cotton in the southern United States. Our first analysis compares risks of glyphosate resistance evolution for seven weed-management strategies in continuous glyphosate-resistant cotton monoculture. In the “worst-case scenario” with five applications of glyphosate each year and no other herbicides applied, evolution of glyphosate resistance was predicted in 74% of simulated populations. In other strategies, glyphosate was applied with various combinations of preplant, PRE, and POST residual herbicides. The most effective strategy included four glyphosate applications with a preplant fomesafen application, and POST tank mixtures of glyphosate plusS-metolachlor followed by glyphosate plus flumioxazin. This strategy reduced the resistance risk to 12% of populations. A second series of simulations compared strategies where glyphosate-resistant cotton was grown in one-to-one rotations with corn or cotton with other herbicide resistance traits. In general, crop rotation reduced risks of resistance by approximately 50% and delayed the evolution of resistance by 2 to 3 yr. These analyses demonstrate that risks of glyphosate resistance evolution in Palmer amaranth can be reduced by reducing glyphosate use within and among years, controlling populations with diverse herbicide modes of action, and ensuring that population size is kept low. However, no strategy completely eliminated the risk of glyphosate resistance.

Differentiation of Life-History Traits among Palmer Amaranth Populations (Amaranthus palmeri) and Its Relation to Cropping Systems and Glyphosate Sensitivity

Weed Science ◽  
2017 ◽  
Vol 65 (3) ◽  
pp. 339-349 ◽  
Author(s):  
Washington Bravo ◽  
Ramon G. Leon ◽  
Jason A. Ferrell ◽  
Michael J. Mulvaney ◽  
C. Wesley Wood
Keyword(s):  
Life History ◽  
Crop Rotation ◽  
Life History Traits ◽  
Cropping Systems ◽  
Glyphosate Resistance ◽  
The United States ◽  
Organic Production ◽  
Palmer Amaranth ◽  
Flowering Plant ◽  
Weed Species

Palmer amaranth’s ability to evolve resistance to different herbicides has been studied extensively, but there is little information about how this weed species might be evolving other life-history traits that could potentially make it more aggressive and difficult to control. We characterized growth and morphological variation among 10 Palmer amaranth populations collected in Florida and Georgia from fields with different cropping histories, ranging from continuous short-statured crops (vegetables and peanut) to tall crops (corn and cotton) and from intensive herbicide use history to organic production. Palmer amaranth populations differed in multiple traits such as fresh and dry weight, days to flowering, plant height, and leaf and canopy shape. Differences between populations for these traits ranged from 36% up to 87%. Although glyphosate-resistant (GR) populations collected from cropping systems including GR crops exhibited higher values of the aforementioned variables than glyphosate-susceptible (GS) populations, variation in traits was not explained by glyphosate resistance or distance between populations. Cropping system components such as crop rotation and crop canopy structure better explained the differences among populations. The higher growth of GR populations compared with GS populations was likely the result of multiple selection forces present in the cropping systems in which they grow rather than a pleiotropic effect of the glyphosate resistance trait. Results suggest that Palmer amaranth can evolve life-history traits increasing its growth and reproduction potential in cropping systems, which explains its rapid spread throughout the United States. Furthermore, our findings highlight the need to consider the evolutionary consequences of crop rotation structure and the use of more competitive crops, which might promote the selection of more aggressive biotypes in weed species with high genetic variability.

scholarly journals Risk Assessment of Glyphosate Resistance in Western Canada

2011 ◽  
Vol 25 (1) ◽  
pp. 159-164 ◽  
Author(s):  
Hugh J. Beckie ◽  
K. Neil Harker ◽  
Linda M. Hall ◽  
Frederick A. Holm ◽  
Robert H. Gulden
Keyword(s):  
Best Management Practices ◽  
Management Practices ◽  
Cropping Systems ◽  
Resistance Management ◽  
Decision Support Tool ◽  
Glyphosate Resistance ◽  
Western Canada ◽  
Support Tool ◽  
Resistance Evolution ◽  
Risk Rating

With increasing incidence of glyphosate-resistant weeds worldwide, greater farmer awareness of the importance of glyphosate stewardship and proactive glyphosate-resistance management is needed. A Web-based decision-support tool (http://www.weedtool.com) comprising 10 questions has been developed primarily for farmers in western Canada to assess the relative risk of selection for glyphosate-resistant weeds on a field-by-field basis. We describe the rationale for the questions and how a response to a particular question influences the risk rating. Practices with the greatest risk weighting in western Canadian cropping systems are lack of crop-rotation diversity (growing mainly oilseeds) and a high frequency of glyphosate-resistant crops in the rotation. Three case scenarios are outlined—low, moderate, and high risk of glyphosate-resistance evolution. Based on the overall risk rating, three best-management practices are recommended to reduce the risk of glyphosate resistance in weeds.

scholarly journals Target-Site Resistances to ALS and PPO Inhibitors Are Linked in Waterhemp (Amaranthus tuberculatus)

Weed Science ◽  
2016 ◽  
Vol 65 (1) ◽  
pp. 4-8 ◽  
Author(s):  
Patrick J. Tranel ◽  
Chenxi Wu ◽  
Ahmed Sadeque
Keyword(s):  
Resistance Mechanism ◽  
Acetolactate Synthase ◽  
Resistance Mechanisms ◽  
Target Site ◽  
Recurrent Parent ◽  
Common Waterhemp ◽  
Independent Assortment ◽  
Resistance Evolution ◽  
Amaranthus Tuberculatus ◽  
Molecular Marker Analysis

It is generally expected that, in the case of multiple herbicide resistance, different resistance mechanisms within a weed will follow Mendel’s law of independent assortment. Research was conducted to investigate anecdotal observations suggesting that target site–based resistances to inhibitors of acetolactate synthase (ALS) and protoporphyrinogen oxidase (PPO) did not follow independent assortment in common waterhemp. Cosegregation of the two resistances was observed in backcross lines (population sensitive to both herbicides as recurrent parent). Specifically, whereas 52% of backcross plants were resistant to a PPO inhibitor, this percentage increased to 92% when the backcross plants were preselected for resistance to an ALS inhibitor. Molecular marker analysis confirmed that the corresponding genes (ALSandPPX2) were genetically linked. When data from all plants analyzed were pooled, the genetic distance between the two genes was calculated to be 7.5 cM. The two genes were found to be about 195 kb apart in the recently published grain amaranth genome, explaining the observed genetic linkage. There is likely enough recombination that occurs between the linked genes to prevent the linkage from having significant implications in terms of resistance evolution. Nevertheless, documentation of the happenstance linkage between target-site genes for resistance to ALS and PPO inhibitors in waterhemp is a reminder that one should not assume distinct resistance mechanism will independently assort.

Evolved Glyphosate Resistance in Plants: Biochemical and Genetic Basis of Resistance

2006 ◽  
Vol 20 (2) ◽  
pp. 282-289 ◽  
Author(s):  
Stephen B. Powles ◽  
Christopher Preston
Keyword(s):  
Amino Acid ◽  
Resistance Mechanism ◽  
Nuclear Gene ◽  
Glyphosate Resistance ◽  
The United States ◽  
Resistance Mechanisms ◽  
Italian Ryegrass ◽  
Weed Species ◽  
Epsps Gene ◽  
Rigid Ryegrass

Resistance to the herbicide glyphosate is currently known in at least eight weed species from many countries. Some populations of goosegrass from Malaysia, rigid ryegrass from Australia, and Italian ryegrass from Chile exhibit target site–based resistance to glyphosate through changes at amino acid 106 of the 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene. Mutations change amino acid 106 from proline to either serine or threonine, conferring an EPSPS weakly resistant to glyphosate. The moderate level of resistance is sufficient for commercial failure of the herbicide to control these plants in the field. Conversely, a nontarget site resistance mechanism has been documented in glyphosate-resistant populations of horseweed and rigid ryegrass from the United States and Australia, respectively. In these resistant plants, there is reduced translocation of glyphosate to meristematic tissues. Both of these mechanisms are inherited as a single, nuclear gene trait. Although at present only two glyphosate-resistance mechanisms are known, it is likely that other mechanisms will become evident. The already very large and still increasing reliance on glyphosate in many parts of the world will inevitably result in more glyphosate-resistant weeds, placing the sustainability of this precious herbicide resource at risk.

scholarly journals AmpC hyperproduction in a Cedecea davisae implant-associated bone infection during treatment: a case report and therapeutic implications

2022 ◽  
Vol 22 (1) ◽  
Author(s):  
Julia Notter ◽  
Salome N. Seiffert ◽  
Maria Zimmermann-Kogadeeva ◽  
Anja Bösch ◽  
Robert Wenger ◽  
...  
Keyword(s):  
Resistance Mechanism ◽  
Resistance Mechanisms ◽  
Antimicrobial Treatment ◽  
Hand Trauma ◽  
Resistance Development ◽  
Therapeutic Implications ◽  
Resistance Evolution ◽  
Resistance Patterns ◽  
Antibiotic Resistance Patterns

Abstract Background Data on antimicrobial resistance mechanisms are scanty for Cedecea spp., with very variable antibiotic resistance patterns documented. Here we report the first in vivo resistance evolution of a C. davisae clinical isolate in a patient with a complex hand trauma and provide insight in the resistance mechanism, leading to therapeutic implications for this pathogen. Case presentation Cedecea davisae was isolated from a patient with hand trauma during a first surgical debridement. Six days after primary surgical treatment and under antimicrobial treatment with amoxicillin-clavulanic acid and later cefepime, follow up cultures yielded C. davisae which demonstrated a resistance development. The susceptible parental isolate and its resistant derivative were characterized by whole genome sequencing, ampC, ompC and ompF by RT- PCR. The resistant derivative demonstrated an A224G SNP in ampD, the transcriptional regulator of ampC, leading to a His75Arg change in the corresponding AmpD protein. AmpC transcription of the resistant derivative was 362-times higher than the susceptible isolate. Transcription levels of ompF and ompC were 8.5-fold and 1.3-fold lower, respectively, in the resistant derivative. Downregulation of OmpF putatively resulted from a mutation in the presumed promoter region upstream of the dusB-Fis operon, a proposed regulator for ompF. Conclusions This case demonstrates the in vivo resistance development of C. davisae within 7 days similar to that of the members of the Enterobacter cloacae complex. Our findings add valuable information for future therapeutic management of these opportunistic pathogens as they warrant the same empirical treatment as AmpC producers.

Confirmation and Resistance Mechanisms in Glyphosate-Resistant Common Ragweed (Ambrosia artemisiifolia) in Arkansas

Weed Science ◽  
2009 ◽  
Vol 57 (6) ◽  
pp. 567-573 ◽  
Author(s):  
Chad E. Brewer ◽  
Lawrence R. Oliver
Keyword(s):  
Resistance Mechanism ◽  
Population Data ◽  
Glyphosate Resistance ◽  
Population Based ◽  
Resistance Mechanisms ◽  
Ambrosia Artemisiifolia ◽  
Target Site ◽  
Susceptible Population ◽  
Common Ragweed

Greenhouse studies were established in Fayetteville, AR, to investigate glyphosate resistance in Arkansas common ragweed populations. Common ragweed seed were collected from plants in Pope and Jackson counties in Arkansas. Plants grown from seed were sprayed with one of seven glyphosate rates. Populations in Pope and Jackson counties were 21-fold and 10-fold more tolerant to glyphosate, respectively, than a known susceptible population. Based on14C-glyphosate absorption and translocation studies, reduced glyphosate absorption or translocation was not the resistance mechanism in Arkansas glyphosate-resistant common ragweed. Shikimate accumulation did not differ among the known susceptible and the two resistant populations at 3 d after treatment (DAT). However, by 5 DAT, shikimate accumulation in the two resistant populations was lower than the known susceptible population. Data indicate that glyphosate-resistant common ragweed is present in at least two locations in Arkansas, and the resistance mechanism is not an insensitive target site or reduced glyphosate absorption or translocation.

scholarly journals Sourgrass Resistance Mechanism to the Herbicide Glyphosate

2019 ◽  
Vol 37 ◽  
Author(s):  
M.S.C. MELO ◽  
L.J.F.N. ROCHA ◽  
C.A.C.G. BRUNHARO ◽  
M. NICOLAI ◽  
V.L. TORNISIELLO ◽  
...  
Keyword(s):  
Resistance Mechanism ◽  
Field Studies ◽  
Glyphosate Resistance ◽  
Resistance Mechanisms ◽  
Mechanism Of Resistance ◽  
Encoding Gene ◽  
Weed Resistance ◽  
Herbicide Glyphosate

ABSTRACT: The knowledge on the mechanism that gives a weed resistance to a particular herbicide is essential regarding scientific, academic, and practical aspects because it determines the recommendations for prevention and management of resistance in the field. Studies on the sourgrass (Digitaria insularis) glyphosate resistance mechanism in the literature have not been conclusive. Thus, the aim of this research was to study and evaluate the putative resistance mechanisms whichgives sourgrass biotypes, the ability to survive after glyphosate application. For this, 14C-glyphosate leaf absorption and translocation were compared in the biotypes Matão (R), Campo Florido (MG), Diamantino (MT), and Iracemápolis (S) as a function of the time after its application. In addition, the possibility that the mechanism of resistance results from a mutation in the EPSPs-encoding gene was also studied. The biotypes S, R, MG, and MT absorbed similar amounts of 14C-glyphosate. The biotypes R, MG, and MT did not present differences in 14C-glyphosate translocation when compared to the biotype S. The sequencing of the EPSPs-encoding gene showed no mutation in the regions 106 and 182, which normally give resistance to glyphosate in the case of other species. No mutation in the EPSPs-encoding gene was observed. Therefore, they are not glyphosate resistance mechanisms for the evaluated biotypes.

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