Early Stage P22 Viral Capsid Self-Assembly Mediated by Scaffolding Protein: Atom-Resolved Model and Molecular Dynamics Simulation

2015 ◽  
Vol 119 (16) ◽  
pp. 5156-5162 ◽  
Author(s):  
Jiajian Jiang ◽  
Jing Yang ◽  
Yuriy V. Sereda ◽  
Peter J. Ortoleva
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Self Assembly ◽  
Early Stage ◽  
Dynamics Simulation ◽  
Scaffolding Protein ◽  
Viral Capsid ◽  
Protein Atom

Molecular insights into the self-assembly of short amphiphilic peptides FmDn and FmKn

RSC Advances ◽  
2014 ◽  
Vol 4 (105) ◽  
pp. 60741-60748 ◽  
Author(s):  
Naresh Thota ◽  
Yijia Ma ◽  
Jianwen Jiang
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Self Assembly ◽  
The Self ◽  
Dynamics Simulation ◽  
Amphiphilic Peptides

Molecular dynamics simulation is reported for the self-assembly of short amphiphilic peptides FmDn and FmKn.

The self-assembly mechanism of tetra-peptides from the motif of β-amyloid peptides: a combined coarse-grained and all-atom molecular dynamics simulation

RSC Advances ◽  
2016 ◽  
Vol 6 (102) ◽  
pp. 100072-100078 ◽  
Author(s):  
Lijun Liang ◽  
Li-Wei Wang ◽  
Jia-Wei Shen
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Self Assembly ◽  
The Self ◽  
Dynamics Simulation ◽  
Coarse Grained ◽  
Aβ Peptides ◽  
Amyloid Peptides ◽  
Assembly Mechanism ◽  
Β Amyloid

Understanding the self-assembly mechanisms of tetra-peptides from Aβ-peptides into different nanostructures.

Reactive molecular dynamics simulation of early stage of dry oxidation of Si (100) surface

2011 ◽  
Vol 110 (5) ◽  
pp. 053513 ◽  
Author(s):  
Mauludi Ariesto Pamungkas ◽  
Minwoong Joe ◽  
Byung-Hyun Kim ◽  
Kwang-Ryeol Lee
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Early Stage ◽  
Dynamics Simulation ◽  
Reactive Molecular Dynamics ◽  
Dry Oxidation

Molecular Dynamics Simulation of Nanoparticle Self-Assembly at a Liquid−Liquid Interface

Langmuir ◽  
2006 ◽  
Vol 22 (14) ◽  
pp. 6385-6390 ◽  
Author(s):  
Mingxiang Luo ◽  
Oleg A. Mazyar ◽  
Qing Zhu ◽  
Mark W. Vaughn ◽  
William L. Hase ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Self Assembly ◽  
Liquid Interface ◽  
Dynamics Simulation

Self-Assembly of Poly(4-methylstyrene)-g-poly(methacrylic acid) Graft Copolymer in Selective Solvents for Grafts: Scattering and Molecular Dynamics Simulation Study

Langmuir ◽  
2010 ◽  
Vol 26 (12) ◽  
pp. 9289-9296 ◽  
Author(s):  
Miroslav Štěpánek ◽  
Peter Košovan ◽  
Karel Procházka ◽  
Miroslav Janata ◽  
Miloš Netopilík ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Graft Copolymer ◽  
Simulation Study ◽  
Methacrylic Acid ◽  
Self Assembly ◽  
Dynamics Simulation ◽  
Selective Solvents
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