Operation of Kelvin Effect in the Activities of an Antifreeze Protein: A Molecular Dynamics Simulation Study

Uday Sankar Midya; Sanjoy Bandyopadhyay

doi:10.1021/acs.jpcb.8b00846

Operation of Kelvin Effect in the Activities of an Antifreeze Protein: A Molecular Dynamics Simulation Study

The Journal of Physical Chemistry B ◽

10.1021/acs.jpcb.8b00846 ◽

2018 ◽

Vol 122 (12) ◽

pp. 3079-3087 ◽

Cited By ~ 4

Author(s):

Uday Sankar Midya ◽

Sanjoy Bandyopadhyay

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Simulation Study ◽

Protein A ◽

Antifreeze Protein ◽

Dynamics Simulation ◽

Kelvin Effect

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Interfacial Water Arrangement in the Ice-Bound State of an Antifreeze Protein: A Molecular Dynamics Simulation Study

Langmuir ◽

10.1021/acs.langmuir.7b01206 ◽

2017 ◽

Vol 33 (22) ◽

pp. 5499-5510 ◽

Cited By ~ 11

Author(s):

Uday Sankar Midya ◽

Sanjoy Bandyopadhyay

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Simulation Study ◽

Protein A ◽

Antifreeze Protein ◽

Bound State ◽

Dynamics Simulation ◽

Interfacial Water

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Growth inhibition at the ice prismatic plane induced by a spruce budworm antifreeze protein: a molecular dynamics simulation study

Physical Chemistry Chemical Physics ◽

10.1039/c1cp21929d ◽

2011 ◽

Vol 13 (44) ◽

pp. 19936 ◽

Cited By ~ 22

Author(s):

H. Nada ◽

Y. Furukawa

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Growth Inhibition ◽

Simulation Study ◽

Protein A ◽

Spruce Budworm ◽

Antifreeze Protein ◽

Dynamics Simulation ◽

Prismatic Plane

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Effect of conjugated (EK)10 peptide on structural and dynamic properties of ubiquitin protein: a molecular dynamics simulation study

Journal of Materials Chemistry B ◽

10.1039/d0tb00664e ◽

2020 ◽

Vol 8 (31) ◽

pp. 6934-6943

Author(s):

Qing Shao

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Simulation Study ◽

Dynamic Properties ◽

Protein A ◽

Dynamics Simulation ◽

Allosteric Effect ◽

Peptide Conjugation ◽

The Stability

Peptide conjugation modulates the stability and biological acitivty of proteins via the allosteric effect.

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Domain focused and residue focused phosphorylation effect on tau protein: A molecular dynamics simulation study

Journal of the Mechanical Behavior of Biomedical Materials ◽

10.1016/j.jmbbm.2020.104149 ◽

2021 ◽

Vol 113 ◽

pp. 104149

Author(s):

Md Ishak Khan ◽

Fuad Hasan ◽

Khandakar Abu Hasan Al Mahmud ◽

Ashfaq Adnan

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Simulation Study ◽

Tau Protein ◽

Protein A ◽

Dynamics Simulation

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Assembly of Transmembrane Domains of Human Papillomavirus Type 16 E5 Protein- a Molecular Dynamics Simulation Study

Biophysical Journal ◽

10.1016/j.bpj.2013.11.411 ◽

2014 ◽

Vol 106 (2) ◽

pp. 60a

Author(s):

Dhani R. Mahato ◽

Wolfgang B. Fischer

Keyword(s):

Molecular Dynamics ◽

Human Papillomavirus ◽

Molecular Dynamics Simulation ◽

Simulation Study ◽

Protein A ◽

Transmembrane Domains ◽

Dynamics Simulation ◽

Human Papillomavirus Type 16 ◽

E5 Protein

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Dielectric response and vibrational energy relaxation in photoactive yellow protein: A molecular dynamics simulation study

Chemical Physics Letters ◽

10.1016/j.cplett.2011.09.066 ◽

2011 ◽

Vol 516 (1-3) ◽

pp. 102-105 ◽

Cited By ~ 5

Author(s):

Ramachandran Gnanasekaran ◽

David M. Leitner

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Simulation Study ◽

Dielectric Response ◽

Vibrational Energy ◽

Protein A ◽

Energy Relaxation ◽

Dynamics Simulation ◽

Photoactive Yellow Protein ◽

Vibrational Energy Relaxation

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Hydration Patterns of Graphene-Based Nanomaterials (GBNMs) Play a Major Role in the Stability of a Helical Protein: A Molecular Dynamics Simulation Study

Langmuir ◽

10.1021/la4033805 ◽

2013 ◽

Vol 29 (46) ◽

pp. 14230-14238 ◽

Cited By ~ 29

Author(s):

Lokesh Baweja ◽

Kanagasabai Balamurugan ◽

Venkatesan Subramanian ◽

Alok Dhawan

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Simulation Study ◽

Protein A ◽

Dynamics Simulation ◽

Helical Protein ◽

The Stability

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How graphene affects the misfolding of human prion protein: A combined experimental and molecular dynamics simulation study

Environmental Research ◽

10.1016/j.envres.2018.12.057 ◽

2019 ◽

Vol 171 ◽

pp. 1-10 ◽

Cited By ~ 2

Author(s):

Yongchang Zhu ◽

Jingjing Guo ◽

Ai Zhang ◽

Lanlan Li ◽

Xuewei Liu ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Prion Protein ◽

Simulation Study ◽

Protein A ◽

Dynamics Simulation ◽

Human Prion Protein

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Low-Frequency Vibrational Spectrum of Water in the Hydration Layer of a Protein: A Molecular Dynamics Simulation Study

The Journal of Physical Chemistry B ◽

10.1021/jp0746401 ◽

2007 ◽

Vol 111 (48) ◽

pp. 13626-13631 ◽

Cited By ~ 32

Author(s):

Sudip Chakraborty ◽

Sudipta Kumar Sinha ◽

Sanjoy Bandyopadhyay

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Vibrational Spectrum ◽

Simulation Study ◽

Protein A ◽

Low Frequency ◽

Dynamics Simulation ◽

Hydration Layer

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Structural features of cholesteryl ester transfer protein: A molecular dynamics simulation study

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.24200 ◽

2012 ◽

Vol 81 (3) ◽

pp. 415-425 ◽

Cited By ~ 19

Author(s):

Dongsheng Lei ◽

Xing Zhang ◽

Shengbo Jiang ◽

Zhaodi Cai ◽

Matthew J. Rames ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Cholesteryl Ester ◽

Cholesteryl Ester Transfer Protein ◽

Simulation Study ◽

Protein A ◽

Structural Features ◽

Dynamics Simulation ◽

Transfer Protein

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