Biopolymers for Biosensors: Polypeptide Nanotubes for Optical Biosensing

Author(s):  
Hatice Duran ◽  
King Hang Aaron Lau ◽  
Anke Lübbert ◽  
Ulrich Jonas ◽  
Martin Steinhart ◽  
...  
Keyword(s):  
2014 ◽  
Author(s):  
Mark H. Bergen ◽  
Jacqueline Nichols ◽  
Christopher M. Collier ◽  
Xian Jin ◽  
Jonathan F. Holzman

Sensors ◽  
2021 ◽  
Vol 21 (9) ◽  
pp. 3254
Author(s):  
Yuri Hayashi Isayama ◽  
Hugo Enrique Hernández-Figueroa

A generalization of the concept of multimode interference sensors is presented here for the first time, to the best of our knowledge. The existing bimodal and trimodal sensors correspond to particular cases of those interference sensors. A thorough study of the properties of the multimode waveguide section provided a deeper insight into the behavior of this class of sensors, which allowed us to establish new criteria for designing more sensitive structures. Other challenges of using high-order modes within the sensing area of the device reside in the excitation of these modes and the interpretation of the output signal. To overcome these, we developed a novel structure to excite any desired high-order mode along with the fundamental mode within the sensing section, while maintaining a fine control over the power distribution between them. A new strategy to detect and interpret the output signal is also presented in detail. Finally, we designed a high-order sensor for which numerical simulations showed a theoretical limit of detection of 1.9×10−7 RIU, making this device the most sensitive multimode interference sensor reported so far.


Small ◽  
2020 ◽  
pp. 2004988
Author(s):  
Youngsun Kim ◽  
John Gonzales ◽  
Yuebing Zheng
Keyword(s):  

2016 ◽  
Vol 253 (4) ◽  
pp. 664-670 ◽  
Author(s):  
Jose Luis Pau ◽  
Antonio García-Marín ◽  
María Jesús Hernández ◽  
Encarnación Lorenzo ◽  
Juan Piqueras

2015 ◽  
Vol 197 (11) ◽  
pp. 1886-1892 ◽  
Author(s):  
Jennifer Tsang ◽  
Takanori Hirano ◽  
Timothy R. Hoover ◽  
Jonathan L. McMurry

ABSTRACTFlagellar biogenesis is a complex process that involves multiple checkpoints to coordinate transcription of flagellar genes with the assembly of the flagellum. InHelicobacter pylori, transcription of the genes needed in the middle stage of flagellar biogenesis is governed by RpoN and the two-component system consisting of the histidine kinase FlgS and response regulator FlgR. In response to an unknown signal, FlgS autophosphorylates and transfers the phosphate to FlgR, initiating transcription from RpoN-dependent promoters. In the present study, export apparatus protein FlhA was examined as a potential signal protein. Deletion of its N-terminal cytoplasmic sequence dramatically decreased expression of two RpoN-dependent genes,flaBandflgE. Optical biosensing demonstrated a high-affinity interaction between FlgS and a peptide consisting of residues 1 to 25 of FlhA (FlhANT). TheKD(equilibrium dissociation constant) was 21 nM and was characterized by fast-on (kon= 2.9 × 104M−1s−1) and slow-off (koff= 6.2 × 10−4s−1) kinetics. FlgS did not bind peptides consisting of smaller fragments of the FlhANTsequence. Analysis of binding to purified fragments of FlgS demonstrated that the C-terminal portion of the protein containing the kinase domain binds FlhANT. FlhANTbinding did not stimulate FlgS autophosphorylationin vitro, suggesting that FlhA facilitates interactions between FlgS and other structures required to stimulate autophosphorylation.IMPORTANCEThe high-affinity binding of FlgS to FlhA characterized in this study points to an additional role for FlhA in flagellar assembly. Beyond its necessity for type III secretion, the N-terminal cytoplasmic sequence of FlhA is required for RpoN-dependent gene expression via interaction with the C-terminal kinase domain of FlgS.


Sensors ◽  
2018 ◽  
Vol 18 (10) ◽  
pp. 3335
Author(s):  
Luca Tramarin ◽  
Carlos Angulo Barrios

A design study of a nanostructured two-dimensional plasmonic crystal based on aluminum and polymeric material for label-free optical biosensing is presented. The structure is formed of Al nanohole and nanodisk array layers physically separated by a polymeric film. The photonic configuration was analyzed through finite-difference time-domain (FDTD) simulations. The calculated spectral reflectance of the device exhibits a surface plasmon polariton (SPP) resonance feature sensitive to the presence of a modeled biolayer adhered onto the metal surfaces. Simulations also reveal that the Al disks suppress an undesired SPP resonance, improving the device performance in terms of resolution as compared to that of a similar configuration without Al disks. On the basis of manufacturability issues, nanohole diameter and depth were considered as design parameters, and a multi-objective optimization process was employed to determine the optimum dimensional values from both performance and fabrication points of view. The effect of Al oxidation, which is expected to occur in an actual device, was also studied.


Author(s):  
Bo Li ◽  
Bifa Cao ◽  
Qiao Zhou ◽  
You Li ◽  
Yongjun Bao ◽  
...  

Turning on Fluorescence Resonance Energy Transfer (FRET) based on Quantum dot (QD)-molecule system plays crucial roles in developing photovoltaic solar cells, optical biosensing schemes and light-emitting devices. The present achievement...


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