The Optimization of Protocols for Proteome Difference Gel Electrophoresis (DiGE) Analysis of Preneoplastic Skin

2007 ◽  
Vol 6 (9) ◽  
pp. 3422-3432 ◽  
Author(s):  
Adele Hannigan ◽  
Richard Burchmore ◽  
Joanna B. Wilson
2008 ◽  
Vol 295 (1) ◽  
pp. R316-R328 ◽  
Author(s):  
Sandra L. Martin ◽  
L. Elaine Epperson ◽  
James C. Rose ◽  
Courtney C. Kurtz ◽  
Cécile Ané ◽  
...  

The intestine of hibernating ground squirrels is protected against damage by ischemia-reperfusion (I/R) injury. This resistance does not depend on the low body temperature of torpor; rather, it is exhibited during natural interbout arousals that periodically return hibernating animals to euthermia. Here we use fluorescence two-dimensional difference gel electrophoresis (DIGE) to identify protein spot differences in intestines of 13-lined ground squirrels in the sensitive and protected phases of the circannual hibernation cycle, comparing sham-treated control animals with those exposed to I/R. Protein spot differences distinguished the sham-treated summer and hibernating samples, as well as the response to I/R between summer and hibernating intestines. The majority of protein changes among these groups were attributed to a seasonal difference between summer and winter hibernators. Many of the protein spots that differed were unambiguously identified by high-pressure liquid chromatography followed by tandem mass spectrometry of their constituent peptides. Western blot analysis confirmed significant upregulation for three of the proteins, albumin, apolipoprotein A-I, and ubiquitin hydrolase L1, that were identified in the DIGE analysis as increased in sham-treated hibernating squirrels compared with sham-treated summer squirrels. This study identifies several candidate proteins that may contribute to hibernation-induced protection of the gut during natural torpor-arousal cycles and experimental I/R injury. It also reveals the importance of enterocyte maturation in defining the hibernating gut proteome and the role of changing cell populations for the differences between sham and I/R-treated summer animals.


2011 ◽  
Vol 8 (1) ◽  
pp. 4 ◽  
Author(s):  
Lokesh A Rukmangadachar ◽  
Jitender Kataria ◽  
Gururao Hariprasad ◽  
Jyotish C Samantaray ◽  
Alagiri Srinivasan

2009 ◽  
Vol 8 (12) ◽  
pp. 5431-5441 ◽  
Author(s):  
Lidiane M. Albuquerque ◽  
Monique R. O. Trugilho ◽  
Alex Chapeaurouge ◽  
Patrícia B. Jurgilas ◽  
Patrícia T. Bozza ◽  
...  

2012 ◽  
Vol 48 (2) ◽  
pp. 139-149 ◽  
Author(s):  
Karen Oliva ◽  
Gillian Barker ◽  
Clyde Riley ◽  
Mark J Bailey ◽  
Michael Permezel ◽  
...  

Our aim was to study the protein expression profiles of placenta obtained from lean and obese pregnant women with normal glucose tolerance at the time of term Caesarean section. We used two-dimensional difference gel electrophoresis (2D-DIGE), utilising narrow-range immobilised pH gradient strips that encompassed the broad pH range of 4–5 and 5–6, followed by MALDI-TOF mass spectrometry of selected protein spots. Western blot and quantitative RT-PCR (qRT-PCR) analyses were performed to validate representative findings from the 2D-DIGE analysis. Eight proteins were altered (six down-regulated and two up-regulated on obese placentas). Annexin A5 (ANXA5), ATP synthase subunit beta, mitochondria (ATPB), brain acid soluble protein 1 (BASP1), ferritin light chain (FTL), heterogeneous nuclear ribonucleoprotein C (HNRPC) and vimentin (VIME) were all lower in obese patients. Alpha-1-antitrypsin (A1AT) and stress-70 protein, mitochondrial (GRP75) were higher in obese patients. Western blot analysis of ANXA5, ATPB, FTL, VIME, A1AT and GRP75 confirmed the findings from the 2D-DIGE analysis. For brain acid soluble protein 1 and HNRPC, qRT-PCR analysis also confirmed the findings from the 2D-DIGE analysis. Immunohistochemical analysis was also used to determine the localisation of the proteins in human placenta. In conclusion, proteomic analysis of placenta reveals differential expression of several proteins in patients with pre-existing obesity. These proteins are implicated in a variety of cellular functions such as regulation of growth, cytoskeletal structure, oxidative stress, inflammation, coagulation and apoptosis. These disturbances may have significant implications for fetal growth and development.


2013 ◽  
Vol 38 (9) ◽  
pp. 1592-1606 ◽  
Author(s):  
Su-Jie SONG ◽  
Jia-Yu GU ◽  
Hui-Jun GUO ◽  
Lin-Shu ZHAO ◽  
Shi-Rong ZHAO ◽  
...  

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