Cerebrospinal fluid liquid biopsies for medulloblastoma

Author(s):  
Joan Seoane ◽  
Laura Escudero
2017 ◽  
Vol 36 (2) ◽  
pp. 429-435 ◽  
Author(s):  
Laura S. Hiemcke-Jiwa ◽  
Monique C. Minnema ◽  
Joyce H. Radersma-van Loon ◽  
N. Mehdi Jiwa ◽  
Mirthe de Boer ◽  
...  

2016 ◽  
Vol 34 (20) ◽  
pp. 2404-2415 ◽  
Author(s):  
Elena I. Pentsova ◽  
Ronak H. Shah ◽  
Jiabin Tang ◽  
Adrienne Boire ◽  
Daoqi You ◽  
...  

Purpose Cancer spread to the central nervous system (CNS) often is diagnosed late and is unresponsive to therapy. Mechanisms of tumor dissemination and evolution within the CNS are largely unknown because of limited access to tumor tissue. Materials and Methods We sequenced 341 cancer-associated genes in cell-free DNA from cerebrospinal fluid (CSF) obtained through routine lumbar puncture in 53 patients with suspected or known CNS involvement by cancer. Results We detected high-confidence somatic alterations in 63% (20 of 32) of patients with CNS metastases of solid tumors, 50% (six of 12) of patients with primary brain tumors, and 0% (zero of nine) of patients without CNS involvement by cancer. Several patients with tumor progression in the CNS during therapy with inhibitors of oncogenic kinases harbored mutations in the kinase target or kinase bypass pathways. In patients with glioma, the most common malignant primary brain tumor in adults, examination of cell-free DNA uncovered patterns of tumor evolution, including temozolomide-associated mutations. Conclusion The study shows that CSF harbors clinically relevant genomic alterations in patients with CNS cancers and should be considered for liquid biopsies to monitor tumor evolution in the CNS.


2020 ◽  
Vol 48 (1) ◽  
pp. E9 ◽  
Author(s):  
Tej D. Azad ◽  
Michael C. Jin ◽  
Lydia J. Bernhardt ◽  
Chetan Bettegowda

Diffuse midline glioma (DMG) is a highly malignant childhood tumor with an exceedingly poor prognosis and limited treatment options. The majority of these tumors harbor somatic mutations in genes encoding histone variants. These recurrent mutations correlate with treatment response and are forming the basis for molecularly guided clinical trials. The ability to detect these mutations, either in circulating tumor DNA (ctDNA) or cerebrospinal fluid tumor DNA (CSF-tDNA), may enable noninvasive molecular profiling and earlier prediction of treatment response. Here, the authors review ctDNA and CSF-tDNA detection methods, detail recent studies that have explored detection of ctDNA and CSF-tDNA in patients with DMG, and discuss the implications of liquid biopsies for patients with DMG.


Nature ◽  
2019 ◽  
Vol 565 (7741) ◽  
pp. 654-658 ◽  
Author(s):  
Alexandra M. Miller ◽  
Ronak H. Shah ◽  
Elena I. Pentsova ◽  
Maryam Pourmaleki ◽  
Samuel Briggs ◽  
...  

Author(s):  
Tabea M. Soelter ◽  
Jordan H. Whitlock ◽  
Avery S. Williams ◽  
Andrew A. Hardigan ◽  
Brittany N. Lasseigne

Alzheimer’s disease is the most common neurodegenerative disease and affects persons of all races, ethnic groups, and sexes. The disease is characterized by neuronal loss leading to cognitive decline and memory loss. There is no cure and the effectiveness of existing treatments is limited and depends on the time of diagnosis. The long prodromal period, during which patients’ ability to live a normal life is not affected despite neuronal loss, often leads to a delayed diagnosis because it can be mistaken for normal aging of the brain. In order to make a substantial impact on AD patients, early diagnosis may provide a greater therapeutic window for future therapies to slow AD-associated neurodegeneration. Current gold standards for disease detection include magnetic resonance imaging and positron emission tomography scans, which visualize amyloid β and phosphorylated tau depositions and aggregates. Liquid biopsies, already an active field of research in precision oncology, are hypothesized to provide early disease detection through minimally or non-invasive sample collection techniques. Liquid biopsies in Alzheimer’s disease have been studied in cerebrospinal fluid, blood, ocular, oral, and olfactory fluids. However, most of the focus has been on blood and cerebrospinal fluid due to biomarker specificity and sensitivity attributed to the effects of the blood-brain barrier and inter-laboratory variation during sample collection. Many studies have identified amyloid β and phosphorylated tau levels as putative biomarkers, however, advances in next-generation sequencing-based liquid biopsy methods have led to significant interest in identifying nucleic acids species associated with Alzheimer’s disease from liquid tissues. Differences in cell-free RNAs and DNAs have been described as potential biomarkers for AD and hold the potential to affect disease diagnosis, treatment, and future research avenues.


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