scholarly journals A catalytic mechanism for the enzyme benzylamine oxidase from pig plasma

1972 ◽  
Vol 130 (3) ◽  
pp. 713-728 ◽  
Author(s):  
C. E. Taylor ◽  
R. S. Taylor ◽  
C. Rasmussen ◽  
P. F. Knowles
Keyword(s):  
Catalytic Mechanism ◽  
Product Inhibition ◽  
Chemical Mechanism ◽  
Strictly Anaerobic ◽  
Anaerobic Conditions ◽  
Independent Evidence ◽  
Product Release ◽  
Benzylamine Oxidase ◽  
Inhibition Studies ◽  
Substrate Addition

Initial-velocity and product-inhibition studies on the enzyme benzylamine oxidase from pig plasma indicate that the order of substrate addition and product release is benzylamine on, ammonia off, oxygen on, hydrogen peroxide off, benzaldehyde off. Ammonia, but not benzaldehyde, is released under strictly anaerobic conditions which provides independent evidence for this order. Benzyl alcohol is a substrate for the enzyme. A chemical mechanism consistent with all the data is proposed.

scholarly journals Product inhibition studies on bovine liver carbamoyl phosphate synthetase

1974 ◽  
Vol 141 (3) ◽  
pp. 817-824 ◽  
Author(s):  
Keith R. F. Elliott ◽  
Keith F. Tipton
Keyword(s):  
Inorganic Phosphate ◽  
Substrate Binding ◽  
Inorganic Ions ◽  
Bovine Liver ◽  
Product Inhibition ◽  
Carbamoyl Phosphate Synthetase ◽  
Carbamoyl Phosphate ◽  
Product Release ◽  
Proposed Model ◽  
Inhibition Studies

A study of the product-inhibition patterns of carbamoyl phosphate synthetase from bovine liver is reported. Inhibition by adenosine, AMP and inorganic ions is also reported. The results are in agreement with the previously proposed model in which the order of substrate binding is ATPMg, followed by HCO3−, ATPMg and NH4+. The order of product release on the basis of the reported results is carbamoyl phosphate, followed by ADPMg, ADPMg and inorganic phosphate.

scholarly journals Steady-state kinetics of malonyl-CoA synthetase from Bradyrhizobium japonicum and evidence for malonyl-AMP formation in the reaction

1994 ◽  
Vol 297 (2) ◽  
pp. 327-333 ◽  
Author(s):  
Y S Kim ◽  
S W Kang
Keyword(s):  
Steady State ◽  
Bradyrhizobium Japonicum ◽  
Initial Velocity ◽  
Catalytic Mechanism ◽  
Kinetic Mechanism ◽  
Product Inhibition ◽  
Steady State Kinetics ◽  
Malonyl Coa ◽  
Michaelis Constants ◽  
Inhibition Studies

Malonyl-CoA synthetase catalyses the formation of malonyl-CoA directly from malonate and CoA with hydrolysis of ATP into AMP and PP1. The catalytic mechanism of malonyl-CoA synthetase from Bradyrhizobium japonicum was investigated by steady-state kinetics. Initial-velocity studies and the product-inhibition studies with AMP and PPi strongly suggested ordered Bi Uni Uni Bi Ping Pong Ter Ter system as the most probable steady-state kinetic mechanism of malonyl-CoA synthetase. Michaelis constants were 61 microM, 260 microM and 42 microM for ATP, malonate and CoA respectively, and the value for Vmax, was 11.2 microM/min. The t.l.c. analysis of the 32P-labelled products in a reaction mixture containing [gamma-32P]ATP in the absence of CoA showed that PPi was produced after the sequential addition of ATP and malonate. Formation of malonyl-AMP, suggested as an intermediate in the kinetically deduced mechanism, was confirmed by the analysis of 31P-n.m.r. spectra of an AMP product isolated from the 18O-transfer experiment using [18O]malonate. The 31P-n.m.r. signal of the AMP product appeared at 0.024 p.p.m. apart from that of [16O4]AMP, indicating that one atom of 18O transferred from [18O]malonate to AMP through the formation of malonyl-AMP. Formation of malonyl-AMP was also confirmed through the t.l.c. analysis of reaction mixture containing [alpha-32P]ATP. These results strongly support the ordered Bi Uni Uni Bi Pin Pong Ter Ter mechanism deduced from initial-velocity and product-inhibition studies.

scholarly journals Kinetics and reaction mechanism of potassium-activated aldehyde dehydrogenase from Saccharomyces cerevisiae

1978 ◽  
Vol 173 (3) ◽  
pp. 787-798 ◽  
Author(s):  
K A Bostian ◽  
G F Betts
Keyword(s):  
Aldehyde Dehydrogenase ◽  
Product Inhibition ◽  
Maximum Activity ◽  
Alternative Substrate ◽  
Steady State Kinetic ◽  
Direct Binding ◽  
Inhibition Studies ◽  
State Kinetic ◽  
Similar Kinetic ◽  
Substrate Addition

Data from steady-state kinetic analysis of yeast K+-activated aldehyde dehydrogenase are consistent with a ternary complex mechanism. Evidence from alternative substrate analysis and product-inhibition studies supports an ordered sequence of substrate binding in which NAD+ is the leading substrate. A preincubation requirement for NAD+ for maximum activity is also consistent with the importance of a binary enzyme-NAD+ complex. Dissociation constant for enzyme-NAD+ complex determined kinetically is in reasonable agreement with that determined by direct binding. The order of substrate addition proposed here differs from that proposed for a yeast aldehyde dehydrogenase previously reported. Different methods of purification produced an enzyme that showed similar kinetic characteristics to those reported here.

scholarly journals Structures of the hydrolase domain of zebrafish 10-formyltetrahydrofolate dehydrogenase and its complexes reveal a complete set of key residues for hydrolysis and product inhibition

2015 ◽  
Vol 71 (4) ◽  
pp. 1006-1021 ◽  
Author(s):  
Chien-Chih Lin ◽  
Phimonphan Chuankhayan ◽  
Wen-Ni Chang ◽  
Tseng-Ting Kao ◽  
Hong-Hsiang Guan ◽  
...  
Keyword(s):  
Binding Site ◽  
Active Site ◽  
Catalytic Mechanism ◽  
Product Inhibition ◽  
Product Specificity ◽  
Product Release ◽  
Terminal Domain ◽  
Complete Set ◽  
Formyltetrahydrofolate Dehydrogenase ◽  
Key Residues

10-Formyltetrahydrofolate dehydrogenase (FDH), which is composed of a small N-terminal domain (Nt-FDH) and a large C-terminal domain, is an abundant folate enzyme in the liver and converts 10-formyltetrahydrofolate (10-FTHF) to tetrahydrofolate (THF) and CO2. Nt-FDH alone possesses a hydrolase activity, which converts 10-FTHF to THF and formate in the presence of β-mercaptoethanol. To elucidate the catalytic mechanism of Nt-FDH, crystal structures of apo-form zNt-FDH from zebrafish and its complexes with the substrate analogue 10-formyl-5,8-dideazafolate (10-FDDF) and with the products THF and formate have been determined. The structures reveal that the conformations of three loops (residues 86–90, 135–143 and 200–203) are altered upon ligand (10-FDDF or THF) binding in the active site. The orientations and geometries of key residues, including Phe89, His106, Arg114, Asp142 and Tyr200, are adjusted for substrate binding and product release during catalysis. Among them, Tyr200 is especially crucial for product release. An additional potential THF binding site is identified in the cavity between two zNt-FDH molecules, which might contribute to the properties of product inhibition and THF storage reported for FDH. Together with mutagenesis studies and activity assays, the structures of zNt-FDH and its complexes provide a coherent picture of the active site and a potential THF binding site of zNt-FDH along with the substrate and product specificity, lending new insights into the molecular mechanism underlying the enzymatic properties of Nt-FDH.

Isocitrate dehydrogenase from Azotobacter vinelandii. Order of substrate addition and product release

Biochemistry ◽  
1972 ◽  
Vol 11 (25) ◽  
pp. 4766-4778 ◽  
Author(s):  
Jeffrey S. Wicken ◽  
Albert E. Chung ◽  
James S. Franzen
Keyword(s):  
Isocitrate Dehydrogenase ◽  
Azotobacter Vinelandii ◽  
Product Release ◽  
Substrate Addition

Versatile Cryostated Optically Transparent Thin-Layer Electrochemical (OTTLE) Cell for Variable-Temperature UV-Vis/IR Spectroelectrochemical Studies

1994 ◽  
Vol 48 (12) ◽  
pp. 1522-1528 ◽  
Author(s):  
F. Hartl ◽  
H. Luyten ◽  
H. A. Nieuwenhuis ◽  
G. C. Schoemaker
Keyword(s):  
Thin Layer ◽  
Low Temperatures ◽  
Variable Temperature ◽  
Experimental Setup ◽  
Strictly Anaerobic ◽  
Carbonyl Complexes ◽  
Anaerobic Conditions ◽  
Optically Transparent ◽  
Solution Layer ◽  
Preset Temperature

This article describes the construction of a novel optically transparent thin-layer electrochemical (OTTLE) cell for IR and UV-Vis spectroelectrochemical experiments at variable temperature. The cell has a three-electrode set melt-sealed into a smooth polyethylene spacer which is sandwiched between two CaF2 windows. The width of this spacer (0.18–0.20 mm) defines the thickness of the thin solution layer. The whole electrode assembly is housed in a thermostated Cu block of the OTTLE cell which fits into a double-walled nitrogen-bath cryostat. The experimental setup permits relatively fast electrolysis within the tested temperature range of 295 to 173 K under strictly anaerobic conditions and protection of light-sensitive compounds. Other important merits of the cell design include lack of leakage, facile cleaning, almost negligible variation of the preset temperature, and facile manipulation in the course of the experiments. The applicability of the variable-temperature IR/UV-Vis OTTLE cell is demonstrated by stabilization of a few electrogenerated carbonyl complexes of Mn(I) and Ru(II) with 3,5-di- tert. butyl-1,2-benzo(semi)quinone (DB(S)Q) and N, N′-diisopropyl-1,4-diaza-1,3-butadiene (iPr-DAB) ligands, respectively, at appropriately low temperatures.

scholarly journals Redesigning Escherichia coli Metabolism for Anaerobic Production of Isobutanol

2011 ◽  
Vol 77 (14) ◽  
pp. 4894-4904 ◽  
Author(s):  
Cong T. Trinh ◽  
Johnny Li ◽  
Harvey W. Blanch ◽  
Douglas S. Clark
Keyword(s):  
Escherichia Coli ◽  
Anaerobic Growth ◽  
Mode Analysis ◽  
Glycolytic Flux ◽  
Strictly Anaerobic ◽  
Anaerobic Conditions ◽  
Content Type ◽  
E Coli ◽  
Model Predictions ◽  
Chromosomal Genes

ABSTRACTFermentation enables the production of reduced metabolites, such as the biofuels ethanol and butanol, from fermentable sugars. This work demonstrates a general approach for designing and constructing a production host that uses a heterologous pathway as an obligately fermentative pathway to produce reduced metabolites, specifically, the biofuel isobutanol. Elementary mode analysis was applied to design anEscherichia colistrain optimized for isobutanol production under strictly anaerobic conditions. The central metabolism ofE. coliwas decomposed into 38,219 functional, unique, and elementary modes (EMs). The model predictions revealed that during anaerobic growthE. colicannot produce isobutanol as the sole fermentative product. By deleting 7 chromosomal genes, the total 38,219 EMs were constrained to 12 EMs, 6 of which can produce high yields of isobutanol in a range from 0.29 to 0.41 g isobutanol/g glucose under anaerobic conditions. The remaining 6 EMs rely primarily on the pyruvate dehydrogenase enzyme complex (PDHC) and are typically inhibited under anaerobic conditions. The redesignedE. colistrain was constrained to employ the anaerobic isobutanol pathways through deletion of 7 chromosomal genes, addition of 2 heterologous genes, and overexpression of 5 genes. Here we present the design, construction, and characterization of an isobutanol-producingE. colistrain to illustrate the approach. The model predictions are evaluated in relation to experimental data and strategies proposed to improve anaerobic isobutanol production. We also show that the endogenous alcohol/aldehyde dehydrogenase AdhE is the key enzyme responsible for the production of isobutanol and ethanol under anaerobic conditions. The glycolytic flux can be controlled to regulate the ratio of isobutanol to ethanol production.

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