A multitude of CRP/FNR-like transcription proteins in Bradyrhizobium japonicum

2006 ◽  
Vol 34 (1) ◽  
pp. 156-159 ◽  
Author(s):  
S. Mesa ◽  
H. Hennecke ◽  
H.-M. Fischer
Keyword(s):  
Gene Expression ◽  
Bradyrhizobium Japonicum ◽  
Sequence Similarity ◽  
Regulatory Protein ◽  
Regulatory System ◽  
Receptor Protein ◽  
Camp Receptor Protein ◽  
Low Oxygen ◽  
Denitrification Gene ◽  
Camp Receptor

In Bradyrhizobium japonicum, the nitrogen-fixing soya bean endosymbiont and facultative denitrifier, three CRP (cAMP receptor protein)/FNR (fumarate and nitrate reductase regulatory protein)-type transcription factors [FixK1, FixK2 and NnrR (nitrite and nitric oxide reductase regulator)] have been studied previously in the context of the regulation of nitrogen fixation and denitrification. The gene expression of both fixK1 and nnrR depends on FixK2, which acts as a key distributor of the ‘low-oxygen’ signal perceived by the two-component regulatory system FixLJ. While the targets for FixK1 are not known, NnrR transduces the nitrogen oxide signal to the level of denitrification gene expression. Besides these three regulators, the complete genome sequence of this organism has revealed the existence of 13 additional CRP/FNR-type proteins whose functions have not yet been studied. Based on sequence similarity and phylogenetic analysis, we discuss in this paper the peculiarities of these additional factors.

scholarly journals LdrP, a cAMP receptor protein/FNR family transcriptional regulator, serves as a positive regulator for the light-inducible gene cluster in the megaplasmid of Thermus thermophilus

Microbiology ◽  
2014 ◽  
Vol 160 (12) ◽  
pp. 2650-2660 ◽  
Author(s):  
Hideaki Takano ◽  
Yoshihiro Agari ◽  
Kenta Hagiwara ◽  
Ren Watanabe ◽  
Ryuta Yamazaki ◽  
...  
Keyword(s):  
Thermus Thermophilus ◽  
Regulatory Protein ◽  
Carotenoid Biosynthesis ◽  
Thermophilic Bacterium ◽  
Receptor Protein ◽  
Camp Receptor Protein ◽  
S1 Nuclease ◽  
Positive Regulator ◽  
Camp Receptor

LdrP (TT_P0055) (LitR-dependent regulatory protein) is one of the four cAMP receptor protein (CRP)/FNR family transcriptional regulators retained by the extremely thermophilic bacterium Thermus thermophilus. Previously, we reported that LdrP served as a positive regulator for the light-induced transcription of crtB, a carotenoid biosynthesis gene encoded on the megaplasmid of this organism. Here, we showed that LdrP also functions as an activator of the expression of genes clustered around the crtB gene under the control of LitR, an adenosyl B12-bound light-sensitive regulator. Transcriptome analysis revealed the existence of 19 LitR-dependent genes on the megaplasmid. S1 nuclease protection assay confirmed that the promoters preceding TT_P0044 (P44), TT_P0049 (P49) and TT_P0070 (P70) were activated upon illumination in the WT strain. An ldrP mutant lost the ability to activate P44, P49 and P70, whilst disruption of litR resulted in constitutive transcription from these promoters irrespective of illumination, indicating that these genes were photo-dependently regulated by LdrP and LitR. An in vitro transcription experiment demonstrated that LdrP directly activated mRNA synthesis from P44 and P70 by the Thermus RNA polymerase holocomplex. The present evidence indicated that LdrP was the positive regulator essential for the transcription of the T. thermophilus light-inducible cluster encoded on the megaplasmid.

Influence of RpoS, cAMP-receptor protein, and ppGpp on expression of the opgGH operon and osmoregulated periplasmic glucan content of Salmonella enterica serovar Typhimurium

2009 ◽  
Vol 55 (11) ◽  
pp. 1284-1293 ◽  
Author(s):  
Cristina S. Costa ◽  
Ramón A. Pizarro ◽  
Dora N. Antón
Keyword(s):  
Salmonella Enterica ◽  
Salmonella Enterica Serovar Typhimurium ◽  
Regulatory System ◽  
Receptor Protein ◽  
Transcriptional Level ◽  
Camp Receptor Protein ◽  
High Osmolarity ◽  
Serovar Typhimurium ◽  
Camp Receptor ◽  
Periplasmic Glucan

A transcriptional fusion (opgG1::MudJ) to the opgGH operon of Salmonella enterica serovar Typhimurium (S. Typhimurium) LT2, isolated by resistance to mecillinam, was used to study the influence of global regulators RpoS, ppGpp, and cAMP/cAMP-receptor protein (CRP) on expression of the opgGH operon and osmoregulated periplasmic glucan (OPG) content. Neither high growth medium osmolarity nor absence of ppGpp or CRP had important effects on opgG1::MudJ expression in exponential cultures. However, under the same conditions, OPG content was strongly decreased by high osmolarity or cAMP/CRP defectiveness, and reduced to a half by lack of ppGpp. In stationary cultures, high osmolarity as well as CRP loss caused significant descents in opgG1::MudJ expression that were compensated by inactivation of RpoS σ factor. No effect of RpoS inactivation on OPG content was observed. It is concluded that opgGH expression in S. Typhimurium is only slightly affected by high osmolarity, but is inversely modulated by RpoS level. On the other hand, osmolarity and the cAMP/CRP global regulatory system appear to control OPG content, either directly or indirectly, mainly at the post-transcriptional level.

scholarly journals cAMP Receptor Protein Positively Regulates the Expression of Genes Involved in the Biosynthesis of Klebsiella oxytoca Tilivalline Cytotoxin

2021 ◽  
Vol 12 ◽  
Author(s):  
Diana Rodríguez-Valverde ◽  
Nancy León-Montes ◽  
Jorge Soria-Bustos ◽  
Jessica Martínez-Cruz ◽  
Ricardo González-Ugalde ◽  
...  
Keyword(s):  
Gene Expression ◽  
Metabolic Regulation ◽  
Divalent Cations ◽  
Klebsiella Oxytoca ◽  
Carbon Sources ◽  
Enteric Bacteria ◽  
Receptor Protein ◽  
Camp Receptor Protein ◽  
Environmental Signals ◽  
Camp Receptor

Klebsiella oxytoca is a resident of the human gut. However, certain K. oxytoca toxigenic strains exist that secrete the nonribosomal peptide tilivalline (TV) cytotoxin. TV is a pyrrolobenzodiazepine that causes antibiotic-associated hemorrhagic colitis (AAHC). The biosynthesis of TV is driven by enzymes encoded by the aroX and NRPS operons. In this study, we determined the effect of environmental signals such as carbon sources, osmolarity, and divalent cations on the transcription of both TV biosynthetic operons. Gene expression was enhanced when bacteria were cultivated in tryptone lactose broth. Glucose, high osmolarity, and depletion of calcium and magnesium diminished gene expression, whereas glycerol increased transcription of both TV biosynthetic operons. The cAMP receptor protein (CRP) is a major transcriptional regulator in bacteria that plays a key role in metabolic regulation. To investigate the role of CRP on the cytotoxicity of K. oxytoca, we compared levels of expression of TV biosynthetic operons and synthesis of TV in wild-type strain MIT 09-7231 and a Δcrp isogenic mutant. In summary, we found that CRP directly activates the transcription of the aroX and NRPS operons and that the absence of CRP reduced cytotoxicity of K. oxytoca on HeLa cells, due to a significant reduction in TV production. This study highlights the importance of the CRP protein in the regulation of virulence genes in enteric bacteria and broadens our knowledge on the regulatory mechanisms of the TV cytotoxin.

N-oxide sensing and denitrification: the DNR transcription factors

2006 ◽  
Vol 34 (1) ◽  
pp. 185-187 ◽  
Author(s):  
S. Rinaldo ◽  
G. Giardina ◽  
M. Brunori ◽  
F. Cutruzzolà
Keyword(s):  
Nitric Oxide ◽  
Transcription Factors ◽  
Steady State ◽  
Nitrate Reductase ◽  
Gene Clusters ◽  
Transcriptional Regulators ◽  
Receptor Protein ◽  
Camp Receptor Protein ◽  
Denitrification Gene ◽  
Camp Receptor

All denitrifiers can keep the steady-state concentrations of nitrite and nitric oxide (NO) below cytotoxic levels by controlling the expression of denitrification gene clusters by redox signalling through transcriptional regulators belonging to the CRP (cAMP receptor protein)/FNR (fumarate and nitrate reductase regulator) superfamily.

scholarly journals AnCrpA, a cAMP receptor protein, regulatesnif-related gene expression in the cyanobacteriumAnabaenasp. strain PCC 7120 grown with nitrate

FEBS Letters ◽  
2006 ◽  
Vol 581 (1) ◽  
pp. 21-28 ◽  
Author(s):  
Takayuki Suzuki ◽  
Hidehisa Yoshimura ◽  
Shigeki Ehira ◽  
Masahiko Ikeuchi ◽  
Masayuki Ohmori
Keyword(s):  
Gene Expression ◽  
Receptor Protein ◽  
Related Gene ◽  
Camp Receptor Protein ◽  
Camp Receptor ◽  
Pcc 7120

scholarly journals cAMP Receptor Protein ControlsVibrio choleraeGene Expression in Response to Host Colonization

mBio ◽  
2018 ◽  
Vol 9 (4) ◽  
Author(s):  
Jainaba Manneh-Roussel ◽  
James R. J. Haycocks ◽  
Andrés Magán ◽  
Nicolas Perez-Soto ◽  
Kerstin Voelz ◽  
...  
Keyword(s):  
Gene Expression ◽  
Transcription Factors ◽  
Vibrio Cholerae ◽  
Expression Patterns ◽  
Lifestyle Changes ◽  
Receptor Protein ◽  
Camp Receptor Protein ◽  
Host Colonization ◽  
Content Type ◽  
Camp Receptor

ABSTRACTThe bacteriumVibrio choleraeis native to aquatic environments and can switch lifestyles to cause disease in humans. Lifestyle switching requires modulation of genetic systems for quorum sensing, intestinal colonization, and toxin production. Much of this regulation occurs at the level of gene expression and is controlled by transcription factors. In this work, we have mapped the binding of cAMP receptor protein (CRP) and RNA polymerase across theV. choleraegenome. We show that CRP is an integral component of the regulatory network that controls lifestyle switching. Focusing on a locus necessary for toxin transport, we demonstrate CRP-dependent regulation of gene expression in response to host colonization. Examination of further CRP-targeted genes reveals that this behavior is commonplace. Hence, CRP is a key regulator of manyV. choleraegenes in response to lifestyle changes.IMPORTANCECholera is an infectious disease that is caused by the bacteriumVibrio cholerae. Best known for causing disease in humans, the bacterium is most commonly found in aquatic ecosystems. Hence, humans acquire cholera following ingestion of food or water contaminated withV. cholerae. Transition between an aquatic environment and a human host triggers a lifestyle switch that involves reprogramming ofV. choleraegene expression patterns. This process is controlled by a network of transcription factors. In this paper, we show that the cAMP receptor protein (CRP) is a key regulator ofV. choleraegene expression in response to lifestyle changes.

scholarly journals The Structure of Bradyrhizobium japonicum Transcription Factor FixK2 Unveils Sites of DNA Binding and Oxidation

2013 ◽  
Vol 288 (20) ◽  
pp. 14238-14246 ◽  
Author(s):  
Mariette Bonnet ◽  
Mareike Kurz ◽  
Socorro Mesa ◽  
Christophe Briand ◽  
Hauke Hennecke ◽  
...  
Keyword(s):  
Dna Binding ◽  
Bradyrhizobium Japonicum ◽  
Regulatory Protein ◽  
Three Dimensional ◽  
Receptor Protein ◽  
Target Sequence ◽  
Protein Variant ◽  
Life Styles ◽  
C Terminus ◽  
Camp Receptor

FixK2 is a regulatory protein that activates a large number of genes for the anoxic and microoxic, endosymbiotic, and nitrogen-fixing life styles of the α-proteobacterium Bradyrhizobium japonicum. FixK2 belongs to the cAMP receptor protein (CRP) superfamily. Although most CRP family members are coregulated by effector molecules, the activity of FixK2 is negatively controlled by oxidation of its single cysteine (Cys-183) located next to the DNA-binding domain and possibly also by proteolysis. Here, we report the three-dimensional x-ray structure of FixK2, a representative of the FixK subgroup of the CRP superfamily. Crystallization succeeded only when (i) an oxidation- and protease-insensitive protein variant (FixK2(C183S)-His6) was used in which Cys-183 was replaced with serine and the C terminus was fused with a hexahistidine tag and (ii) this protein was allowed to form a complex with a 30-mer double-stranded target DNA. The structure of the FixK2-DNA complex was solved at a resolution of 1.77 Å, at which the protein formed a homodimer. The precise protein-DNA contacts were identified, which led to an affirmation of the canonical target sequence, the so-called FixK2 box. The C terminus is surface-exposed, which might explain its sensitivity to specific cleavage and degradation. The oxidation-sensitive Cys-183 is also surface-exposed and in close proximity to DNA. Therefore, we propose a mechanism whereby the oxo acids generated after oxidation of the cysteine thiol cause an electrostatic repulsion, thus preventing specific DNA binding.

scholarly journals The cAMP receptor protein of Trypanosoma cruzi.

1983 ◽  
Vol 258 (11) ◽  
pp. 6979-6983 ◽  
Author(s):  
R Rangel-Aldao ◽  
G Tovar ◽  
M Ledezma de Ruiz
Keyword(s):  
Trypanosoma Cruzi ◽  
Receptor Protein ◽  
Camp Receptor Protein ◽  
Camp Receptor
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