Genetic variation in populations of two Mediterranean annual pasture legumes (Biserrula pelecinus L. and Ornithopus compressus L.) and associated rhizobia

1999 ◽  
Vol 50 (3) ◽  
pp. 303 ◽  
Author(s):  
A. Loi ◽  
J. G. Howieson ◽  
P. S. Cocks ◽  
S. J. Carr
Keyword(s):  
Genetic Variation ◽  
Flowering Time ◽  
Morphological Traits ◽  
Root Nodule ◽  
Dna Analysis ◽  
Phenotypic Variability ◽  
Pcr Amplification ◽  
Nodule Bacteria ◽  
Pasture Legumes ◽  
Ornithopus Compressus

Genetic variation between and within populations of Biserrula pelecinus L. (biserrula) and Ornithopus compressus L. (yellow serradella) and associated rhizobia was studied using germplasm collected from sites in central-eastern and south-eastern Sardinia (Italy). Pods and root-nodule bacteria were collected on diagonal transects at each site. Plants were characterised in nursery rows and the rhizobia were isolated and tested for their effectiveness. Thirteen morphological traits were recorded and the results were analysed using cluster analysis. Genetic and phenotypic variation of rhizobia were assessed using DNA analysis (PCR, RAPDs) and effectiveness indices, respectively. Genetic variation based on morphological traits was found between and within sites for both species. Pod characteristics and flowering time were the most important traits assisting in discriminating between accessions. Flowering time varied more in serradella than in biserrula, particularly at Cantoniera Cannas. Although all rhizobial strains nodulated all accessions of biserrula, great variability in capacity to fix nitrogen was evident between and within sites. Distinct PCR amplification profiles were generated for individual rhizobial strains, which confirmed the phenotypic variability (effectiveness indices) of the strains. No relationship was found between host and rhizobia variation. The results are discussed in terms of (a) genetic differences for each species within and between sites; (b) differences in behaviour in respect to genetic variation between biserrula, serradella, and other Mediterranean annual legumes; and (c) spatial variability and symbiotic effectiveness of rhizobia.

Selection and evaluation of root nodule bacteria for Dorycnium spp.

2005 ◽  
Vol 45 (3) ◽  
pp. 241 ◽  
Author(s):  
S. R. Davies ◽  
J. G. Howieson ◽  
R. J. Yates ◽  
P. A. Lane
Keyword(s):  
Dry Matter ◽  
Root Nodule ◽  
Field Conditions ◽  
Low Fertility ◽  
Sand Culture ◽  
Nodule Bacteria ◽  
Root Nodule Bacteria ◽  
Pasture Legumes ◽  
Matter Production ◽  
Perennial Legumes

Dorycnium spp. are perennial legumes that have the ability to produce a source of forage in low fertility soils under low rainfall conditions. The inoculation of Dorycnium spp. is currently with the commercial Lotus corniculatus inoculant SU343, which until now had not been trialed against a range of alternative inoculants for Dorycnium spp. A glasshouse trial in sterile sand culture was conducted with 3 species of Dorycnium spp. along with 6 important pasture legumes to evaluate nitrogen-fixing performance, and host and rhizobia interactions. Several inoculants were selected from this trial to undergo evaluation under Tasmanian field conditions. The dry matter production of Dorycnium spp. in the glasshouse and field indicated that SU343 is a suitable inoculant for this genus. A Tasmanian isolate (WSM2338) was identified as a complimentary strain for the inoculation of Dorycnium spp., however, negative interactions with important pasture legumes require further investigation.

Variation in the morphology and flowering time of cluster clover (Trifolium glomeratum L.) and its relationship to distribution in southern Australia

1995 ◽  
Vol 46 (5) ◽  
pp. 1027 ◽  
Author(s):  
FP Smith ◽  
PS Cocks ◽  
MA Ewing
Keyword(s):  
Genetic Variation ◽  
Flowering Time ◽  
Seed Mass ◽  
Annual Rainfall ◽  
Strongly Correlated ◽  
Summer Maximum ◽  
Maximum Temperatures ◽  
Pattern Of Variation ◽  
Growth Habits

Cluster clover is a widely distributed and ecologically successful introduced legume in southern Australia. In an attempt to understand the role of genetic variation in this success, morphological and physiological traits were measured in 94 accessions from southern Australia and 6 from the Mediterranean basin. Flowering time ranged from 105 to 185 days after sowing, but was not strongly correlated with annual rainfall or length of growing season at the site of collection. Variation in other traits partitioned the populations into two morphs which, apart from flowering time and leaf marker, were largely homogeneous. The morphs differed significantly in floret number per inflorescence (22 v. 32-37) and seed mass (379 8g v. 523 8g), had different growth habits and strong within-morph associations between leaf markers and stipule and petal coloration. The morphs differed in their distributions within southern Australia and the pattern of distribution was related to summer maximum temperatures, winter minimum temperatures and spring rainfall. These results demonstrate that genetic variation has been important to the success of cluster clover and suggests that the variation is organized. The pattern of variation observed and its relationship to ecogeography is consistent with findings for other highly inbreeding species. A map of the species distribution in Western Australia is presented.

scholarly journals Population genetic variation analysis of bitter gourd wilt caused by Fusarium oxysporum f. sp. momordicae in China using inter simple sequence repeats (ISSR) molecular markers

2021 ◽  
Author(s):  
Rui Zang ◽  
Ying Zhao ◽  
Kangdi Guo ◽  
Kunqi Hong ◽  
Huijun Xi ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Genetic Differentiation ◽  
Fusarium Oxysporum ◽  
Diversity Index ◽  
Gene Diversity ◽  
Pcr Amplification ◽  
Bitter Gourd ◽  
Diseased Plant ◽  
Variation Analysis ◽  
Group I

AbstractBitter gourd wilt caused by Fusarium oxysporum f. sp. momordicae (FOM) is a devastating crop disease in China. A total of 173 isolates characteristic of typical Fusarium oxysporum with abundant microconidia and macroconidia on white or ruby colonies were obtained from diseased plant tissues. BLASTn analysis of the rDNA-ITS of the isolates showed 99% identity with F. oxysporum species. Among the tested isolates, three were infectious toward tower gourd and five were pathogenic to bottle gourd. However, all of the isolates were pathogenic to bitter gourd. For genetic differences analysis, 40 ISSR primers were screened and 11 primers were used for ISSR-PCR amplification. In total, 127 loci were detected, of which 76 were polymorphic at a rate of 59.84%. POPGENE analysis showed that Nei’s gene diversity index (H) and Shannon’s information index (I) were 0.09 and 0.15, respectively, which indicated that the genetic diversity of the 173 isolates was low. The coefficient of gene differentiation (Gst = 0.33 > 0.15) indicated that genetic differentiation was mainly among populations. The strength of gene flow (Nm = 1.01 > 1.0) was weak, indicating that the population differentiation caused by gene drift was blocked to some degree. The dendrogram based on ISSR markers showed that the nine geographical populations were clustered into two groups at the threshold of genetic similarity coefficient of 0.96. The Shandong and Henan populations were clustered into Group I, while the Guangdong, Hainan, Guangxi, Fujian, Jiangxi, and Hubei populations constituted Group II. Results of the genetic variation analysis showed that the Hunan and Guangxi populations had the highest degree of genetic differentiation, while the Hubei population had the lowest genetic differentiation. Our findings enrich the knowledge of the genetic variation characteristics of FOM populations with the goal of developing effective disease-management programs and resistance breeding programs.

Functional Specificity of the nifA Gene Product within the Group of Root Nodule Bacteria

Microbiology ◽  
2021 ◽  
Vol 90 (4) ◽  
pp. 481-488
Author(s):  
A. A. Vladimirova ◽  
R. S. Gumenko ◽  
E. S. Akimova ◽  
Al. Kh. Baymiev ◽  
An. Kh. Baymiev
Keyword(s):  
Gene Product ◽  
Root Nodule ◽  
Nodule Bacteria ◽  
Functional Specificity ◽  
Root Nodule Bacteria ◽  
Nifa Gene

scholarly journals Quantitative evaluation of acidity tolerance of root nodule bacteria

1999 ◽  
Vol 30 (3) ◽  
pp. 203-208 ◽  
Author(s):  
Luiz Antonio de Oliveira ◽  
Hélio Paracaima de Magalhães
Keyword(s):  
Root Nodule ◽  
Maximum Growth ◽  
Nodule Bacteria ◽  
Root Nodule Bacteria ◽  
Soil Persistence ◽  
Statistical Precision ◽  
Visible Growth ◽  
Selection For ◽  
Growth Scores ◽  
Selection Of

Quantification of acidity tolerance in the laboratory may be the first step in rhizobial strain selection for the Amazon region. The present method evaluated rhizobia in Petri dishes with YMA medium at pH 6.5 (control) and 4.5, using scores of 1.0 (sensitive, "no visible" growth) to 4.0 (tolerant, maximum growth). Growth evaluations were done at 6, 9, 12, 15 and 18 day periods. This method permits preliminary selection of root nodule bacteria from Amazonian soils with statistical precision. Among the 31 rhizobia strains initially tested, the INPA strains 048, 078, and 671 presented scores of 4.0 at both pHs after 9 days of growth. Strain analyses using a less rigorous criterion (growth scores higher than 3.0) included in this highly tolerant group the INPA strains 511, 565, 576, 632, 649, and 658, which grew on the most diluted zone (zone 4) after 9 days. Tolerant strains still must be tested for nitrogen fixation effectiveness, competitiveness for nodule sites, and soil persistence before their recommendation as inoculants.

Application of molecular techniques to studies in Rhizobium ecology: a review

2001 ◽  
Vol 41 (3) ◽  
pp. 299 ◽  
Author(s):  
J. E. Thies ◽  
E. M. Holmes ◽  
A. Vachot
Keyword(s):  
Root Nodule ◽  
Molecular Techniques ◽  
Nodule Bacteria ◽  
Bacterial Genomes ◽  
Root Nodule Bacteria ◽  
Bacterial Signaling ◽  
Field Environment ◽  
Background Population ◽  
Insight Into ◽  
Made In

The symbiosis between legumes and their specific root-nodule bacteria, rhizobia, has been employed to improve agricultural productivity for most of the 20th century. During this time, great advances have been made in our knowledge of both plant and bacterial genomes, the biochemistry of the symbiosis, plant and bacterial signaling and the measurement of nitrogen fixation. However, knowledge of the ecology of the bacterial symbiont has lagged behind, largely due to a lack of practical techniques that can be used to monitor and assess the performance of these bacteria in the field. Most techniques developed in the last few decades have relied on somehow ‘marking’ individual strains to allow us to follow their fate in the field environment. Such techniques, while providing knowledge of the success or failure of specific strains in a range of environments, have not allowed insight into the nature of the pre-existing rhizobial populations in these sites, nor the interaction between marked strains and the background population. The advent of molecular techniques has revolutionised the study of Rhizobium ecology by allowing us to follow the flux of a variety of ecotypes within a particular site and to examine how introduced rhizobia interact with a genetically diverse background. In addition, molecular techniques have increased our understanding of how individual strains and populations of root-nodule bacteria respond to changes in the environment and how genetic diversity evolves in field sites over time. This review focuses on recently developed molecular techniques that hold promise for continuing to develop our understanding of Rhizobium ecology and how these can be used to address a range of applied problems to yield new insights into rhizobial life in soil and as legume symbionts.

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