A century later - a total evidence re-evaluation of the phylogeny of scutigeromorph centipedes (Myriapoda:Chilopoda)

2006 ◽  
Vol 20 (5) ◽  
pp. 503 ◽  
Author(s):  
Gregory D. Edgecombe ◽  
Gonzalo Giribet
Keyword(s):  
Molecular Markers ◽  
18S Rrna ◽  
Sequence Data ◽  
Histone H3 ◽  
Sister Group ◽  
Morphological Characters ◽  
Molecular Data ◽  
Total Evidence ◽  
28S Rrna ◽  
Group Relationships

Scutigeromorpha (‘house centipedes’) play a pivotal role in myriapod systematics in being the sister group to all other chilopods, but their internal phylogeny has not been comprehensively appraised since K. W. Verhoeff’s morphological investigations a century ago. Relationships between the three families of Scutigeromorpha are inferred based on a combined analysis of approximately 5.5 Kb of sequence data from five molecular markers (complete 18S rRNA, a 2.2-Kb fragment of 28S rRNA, 16S rRNA, cytochrome c oxidase subunit I, histone H3) and 33 ingroup morphological characters. Molecular data are available for 19 ingroup terminals representing 14 morphospecies that include the genera Scutigerina, Madagassophora (family Scutigerinidae), Sphendononema (family Pselliodidae), Scutigera, Thereuopoda, Thereuopodina, Thereuonema, Allothereua and Parascutigera (family Scutigeridae). Morphology resolves the southern African–Malagasy Scutigerinidae as sister to all other Scutigeromorpha, whereas rival sister-group relationships between the Neotropical–Afrotropical Pselliodidae and Scutigerinidae + Scutigeridae or Pselliodidae + Scutigerinidae and Scutigeridae are resolved by the molecular and combined analyses. Monophyly of Scutigeridae and Thereuoneminae are stable across a broad range of analytical parameters. Thereuoneminae is composed of two stable clades: an Allothereua + Parascutigera group, and a grouping of Thereuopoda, Thereuonema and Thereuopodina. Molecular and combined analyses resolve the genus Scutigerina and the morphospecies Scutigerina weberi as paraphyletic, in both cases with a Malagasy clade excluding populations from southern Africa.

Determining the position of Diomocoris, Micromimetus and Taylorilygus in the Lygus-complex based on molecular data and first records of Diomocoris and Micromimetus from Australia, including four new species (Insecta : Hemiptera : Miridae : Mirinae)

2021 ◽  
Author(s):  
Anna A. Namyatova ◽  
Michael D. Schwartz ◽  
Gerasimos Cassis
Keyword(s):  
New Species ◽  
16S Rrna ◽  
Morphological Study ◽  
18S Rrna ◽  
Initial Step ◽  
Sister Group ◽  
Molecular Data ◽  
28S Rrna ◽  
Group Relationships ◽  
First Time

The Lygus-complex is one of the most taxonomically challenging groups of Miridae (Heteroptera), and its Australian fauna is poorly studied. Here we examine the Australian taxa of the Lygus-complex using morphological and molecular methods. After a detailed morphological study of the material collected throughout Australia, Taylorilygus nebulosus is transferred to Diomocoris, with the genus recorded for the first time in this country. Taylorilygus apicalis, also widely distributed in Australia, is redescribed on the basis of Australian material. The genus Micromimetus is recorded for the first time in Australia, with M. celiae, sp. nov., M. hannahae, sp. nov., M. nikolai, sp. nov. and M. shofneri, sp. nov. described as new to science. Micromimetus pictipes is redescribed and its distributional range is increased. The monophyly of the Lygus-complex and relationships within this group were tested using cytochrome c oxidase subunit I (COI), 16S rRNA, 18S rRNA and 28S rRNA markers. The Lygus-complex has been found to be non-monophyletic. Phylogeny confirmed the monophyly of Micromimetus, and it has shown that Taylorilygus apicalis is closer to Micromimetus species than to Diomocoris nebulosus. This study is the initial step in understanding the Lygus-complex phylogeny; analyses with more taxa, more genes and morphology are needed to reveal the interrelationships within this group, and sister-group relationships of Australian taxa. http://zoobank.org/urn:lsid:zoobank.org:pub:7393D96B-2BBA-438D-A134-D372EFE7FB9E

Living and fossil placentals

2004 ◽  
Author(s):  
T.S. Kemp
Keyword(s):  
Sequence Data ◽  
Sister Group ◽  
Morphological Characters ◽  
Molecular Data ◽  
Molecular Sequence Data ◽  
Minor Characters ◽  
Molecular Sequence ◽  
Large Sets ◽  
Anterior Teeth ◽  
Basal Group

The vast majority of living and fossil mammals are placentals. Today there are about 4,400 species, which are traditionally organised into 18 Orders, with an extra one if the Pinnipedia are separated from the Carnivora, and a twentieth if the recently extinct Malagasy order Bibymalagasia is recognised as such. There have been many attempts to discover supraordinal groupings from amongst these Orders based on morphological characters, though few proposals have been universally accepted. It is only with the advent of increasingly large sets of molecular sequence data in the last few years that a reasonably robust resolution looks imminent, although these contemporary analyses are remarkably and controversially at odds with the traditional ones. Novacek et al. (1988) summarised the then current situation regarding supraordinal classification of placentals, a time at which morphology was still dominant but molecular data was at the threshold of significance. They accepted a basal group Edentata that combined the Xenarthra of the New World with the Pholidota of the Old, based on a few cranial characters, loss of the anterior teeth, and reduction of the enamel of the remaining ones. This left the rest of the living placentals as a monophyletic group Epitheria, sharing such apparently minor characters as the shape of the stapes bone in the ear. They found very little resolution within the Epitheria, and concluded that there was a polychotomy of no less than nine lineages arranged as a ‘star’ phylogeny. No remnant of the previously recognised taxon Ferungulata, created by Simpson (1945) for the Carnivora plus the ungulate orders Artiodactyla, Perissodactyla, Proboscidea, Hyracoidea, Sirenia, and Tubulidentata remained. On the other hand, three supra ordinal taxa of earlier authors did survive. One was Gregory’s (1910) Archonta, consisting of generally conservative forms and by now composed of the Primates, Dermoptera, Scandentia, and Chiroptera, but excluding the Lipotyphla. The second was Glires, originating with Linnaeus (1758) and widely accepted ever since, for the Rodentia and Lagomorpha; Novacek et al. (1988) tentatively placed the Macroscelidea as the sister-group of the Glires. The third supraordinal taxon recognised was, like Glires, well-established if not universally accepted.

Phylogeny and biogeography of the Australasian centipede Henicops (Chilopoda: Lithobiomorpha): A combined morphological and molecular approach

2006 ◽  
Vol 37 (3) ◽  
pp. 241-256 ◽  
Author(s):  
Donald Colgan ◽  
Gregory Edgecombe ◽  
Deirdre Sharkey
Keyword(s):  
New Zealand ◽  
Western Australia ◽  
New Caledonia ◽  
Sequence Data ◽  
Morphological Characters ◽  
Molecular Data ◽  
28S Rrna ◽  
Southeastern Australia ◽  
Lord Howe Island ◽  
Eastern Australia

AbstractThe lithobiomorph centipede Henicops is widely distributed in Australia and New Zealand, with five described species, as well as two species in New Caledonia and Lord Howe Island. Parsimony, maximum likelihood and Bayesian analyses of ca. 800 aligned bases of sequence data from 16S rRNA and 28S rRNA were conducted on a dataset including multiple individuals of Henicops species from populations sampled from different parts of species' geographic ranges, together with the allied henicopines Lamyctes and Easonobius. Morphological characters are included in parsimony analyses. Molecular and combined datasets unite species from eastern Australia and New Zealand to the exclusion of species from Western Australia, New Caledonia and Lord Howe Island. The molecular data favour these two geographic groupings as clades, whereas inclusion of morphology resolves New Caledonia, Lord Howe Island, southwest Western Australia and Queensland as successive sisters to southeastern Australia and New Zealand. The basal position of the Lord Howe Island species in the phylogeny favours a diversification of Australasian Henicops since the late Miocene unless the Lord Howe species originated in a biota that pre-dates the island. The molecular and combined data resolve the widespread morphospecies H. maculatus as paraphyletic, with its populations contributing to the geographic groupings New South Wales + New Zealand and Tasmania + Victoria.

scholarly journals Synonymization of the male-based ant genus Phaulomyrma (Hymenoptera, Formicidae) with Leptanilla based upon Bayesian total-evidence phylogenetic inference

2020 ◽  
Author(s):  
Zachary H. Griebenow
Keyword(s):  
Sequence Data ◽  
Phylogenetic Inference ◽  
Morphological Characters ◽  
Molecular Data ◽  
Total Evidence ◽  
Morphological Data ◽  
Systematic Revision ◽  
Dna Sequence Data ◽  
Evidence Framework ◽  
Nuclear Loci

Abstract.Although molecular data have proven indispensable in confidently resolving the phylogeny of many clades across the tree of life, these data may be inaccessible for certain taxa. The resolution of taxonomy in the ant subfamily Leptanillinae is made problematic by the absence of DNA sequence data for leptanilline taxa that are known only from male specimens, including the monotypic genus Phaulomyrma Wheeler & Wheeler. Focusing upon the considerable diversity of undescribed male leptanilline morphospecies, the phylogeny of 35 putative morphospecies sampled from across the Leptanillinae, plus an outgroup, is inferred from 11 nuclear loci and 41 discrete male morphological characters using a Bayesian total-evidence framework, with Phaulomyrma represented by morphological data only. Based upon the results of this analysis Phaulomyrma is synonymized with Leptanilla Emery, and male-based diagnoses for Leptanilla that are grounded in phylogeny are provided, under both broad and narrow circumscriptions of that genus. This demonstrates the potential utility of a total-evidence approach in inferring the phylogeny of rare extant taxa for which molecular data are unavailable and begins a long-overdue systematic revision of the Leptanillinae that is focused on male material.

Conflict and congruence between morphological and molecular data: revision of the Merodon constans group (Diptera : Syrphidae)

2020 ◽  
Author(s):  
Ante Vujić ◽  
Snežana Radenković ◽  
Laura Likov ◽  
Andrijana Andrić ◽  
Marina Janković ◽  
...  
Keyword(s):  
Molecular Markers ◽  
Distinct Species ◽  
Morphological Characters ◽  
Molecular Data ◽  
Species Group ◽  
Rrna Genes ◽  
Rrna Gene ◽  
28S Rrna ◽  
The Status ◽  
Data Revision

We revise the Merodon constans species group of the genus Merodon Meigen, 1803 (Diptera: Syrphidae), provide morphological diagnosesand descriptions, as well as an illustrated key and a discussion on the different taxonomic characters used. In total, 15 species were studied, their geographic distributions are presented on maps, and nine new species are described. Two species are redefined and neotypes are designated, lectotypes are designated for five species, and onespeciesis reinstated as valid. Following a detailed study of type material in different entomological collections, the status of several species is revised and three new synonymies are proposed. The M. constans species group was resolved as being monophyletic within the M. albifrons lineage based on molecular analyses using COI and 28S rRNA gene sequences. Three species morphologically similar to M. constans (Rossi, 1794) but occurring outside its distributional rangewere supported as being valid and distinct species on the basis of molecular data, but they were not distinguishable based on morphological characters. By contrast, continental populations of M. analis Meigen, 1822 could not be separated from Mediterranean M. constans based on differences in COI or 28S rRNA genes. The same molecular markers could not discriminate between two other species pairs. We conclude that these molecular markers only partially resolve species within the M. constans group. Geometric morphometry of wing shape successfully separated M. analis and M. constans, as well as M. spineus Vujić, Šašić Zorić & Likov, sp. nov. in both species and population analyses.

Studies on Longidorus iberis (Escuer & Arias, 1997) n. comb. (Nematoda: Longidoridae) from Spain

Nematology ◽  
2021 ◽  
pp. 1-15
Author(s):  
Ilenia Clavero-Camacho ◽  
Gracia Liébanas ◽  
Miguel Escuer ◽  
Carolina Cantalapiedra-Navarrete ◽  
Antonio Archidona-Yuste ◽  
...  
Keyword(s):  
Molecular Markers ◽  
18S Rrna ◽  
Molecular Data ◽  
Valid Species ◽  
28S Rrna ◽  
Closely Related Species ◽  
North West ◽  
Molecular Studies ◽  
First Time ◽  
Partial 18S

Summary Specimens of a thin longidorid species collected in Peñalba (Huesca), north-west Spain, were previously described as Paralongidorus iberis. However, we conclude, through scanning electron microscopy and molecular studies on a population from about 15 km from the type locality and on paratype specimens, that this species was originally placed in the wrong genus. Both populations have pore-like amphidial apertures, not slit-like as in Paralongidorus, and the species is therefore transferred to Longidorus. Longidorus iberis n. comb. is regarded as a valid species and is clearly different from closely related species such as L. tabernensis, L. iliturgiensis, L. alvegus and L. indalus in morphometrics and molecular markers. Molecular data are reported for the first time, including the D2-D3 expansion segments of 28S rRNA, ITS1 rRNA, partial 18S rRNA and partial mitochondrial coxI regions. These molecular markers were used for inferring the phylogenetic relationships with other species within Longidorus and Paralongidorus, all clearly separating L. iberis n. comb. from other related taxa and placing the species in the Longidorus clade, rather than with Paralongidorus.

scholarly journals Synergistic effects of combining morphological and molecular data in resolving the phylogeny of butterflies and skippers

2005 ◽  
Vol 272 (1572) ◽  
pp. 1577-1586 ◽  
Author(s):  
Niklas Wahlberg ◽  
Michael F Braby ◽  
Andrew V.Z Brower ◽  
Rienk de Jong ◽  
Ming-Min Lee ◽  
...  
Keyword(s):  
Dna Sequences ◽  
Synergistic Effects ◽  
Strong Support ◽  
Sister Group ◽  
Morphological Characters ◽  
Molecular Data ◽  
Total Evidence ◽  
Data Matrix ◽  
Morphological Data ◽  
Combined Analysis

Phylogenetic relationships among major clades of butterflies and skippers have long been controversial, with no general consensus even today. Such lack of resolution is a substantial impediment to using the otherwise well studied butterflies as a model group in biology. Here we report the results of a combined analysis of DNA sequences from three genes and a morphological data matrix for 57 taxa (3258 characters, 1290 parsimony informative) representing all major lineages from the three putative butterfly super-families (Hedyloidea, Hesperioidea and Papilionoidea), plus out-groups representing other ditrysian Lepidoptera families. Recently, the utility of morphological data as a source of phylogenetic evidence has been debated. We present the first well supported phylogenetic hypothesis for the butterflies and skippers based on a total-evidence analysis of both traditional morphological characters and new molecular characters from three gene regions ( COI , EF-1α and wingless ). All four data partitions show substantial hidden support for the deeper nodes, which emerges only in a combined analysis in which the addition of morphological data plays a crucial role. With the exception of Nymphalidae, the traditionally recognized families are found to be strongly supported monophyletic clades with the following relationships: (Hesperiidae+(Papilionidae+(Pieridae+(Nymphalidae+(Lycaenidae+Riodinidae))))). Nymphalidae is recovered as a monophyletic clade but this clade does not have strong support. Lycaenidae and Riodinidae are sister groups with strong support and we suggest that the latter be given family rank. The position of Pieridae as the sister taxon to nymphalids, lycaenids and riodinids is supported by morphology and the EF-1α data but conflicted by the COI and wingless data. Hedylidae are more likely to be related to butterflies and skippers than geometrid moths and appear to be the sister group to Papilionoidea+Hesperioidea.

Phylogenetic analysis of Micracidini bark beetles (Coleoptera: Curculionidae) demonstrates a single trans-Atlantic disjunction and inclusion ofCactopinusin the New World clade

2016 ◽  
Vol 149 (1) ◽  
pp. 8-25 ◽  
Author(s):  
Bjarte H. Jordal ◽  
Johanna Kaidel
Keyword(s):  
Phylogenetic Analysis ◽  
Bark Beetles ◽  
New World ◽  
Sister Group ◽  
Morphological Characters ◽  
Molecular Data ◽  
Morphological Similarity ◽  
External Data ◽  
Group Relationships ◽  
Morphological And Molecular Data

AbstractMicracidini (Coleoptera: Curculionidae: Scolytinae) is an unusual tribe of mainly bigynous bark beetles found in dry forests and scrublands in Afrotropical and Neotropical regions. Their phylogenetic relationship to other bark beetle groups is poorly known with few clues from external morphology. Hence, a phylogenetic analysis of five genes (COI, EF-1a, 28S, CAD, ArgK) and morphological (internal and external) data was conducted to test potential sister group relationships, including 56 outgroup genera in 22 tribes, and 18 species in 10 genera of Micracidini.CactopinusSchwarz – a genus with many cactus feeding species – was nested within a clade of all Neotropical and Nearctic genera. The New World was colonised by an Afrotropical ancestor about 75–85 million years ago, where cactus feeding inCactopinusevolved much later. All analyses indicated a paraphyletic clade of Afrotropical micracidines, strongly supporting inclusion of the Ipini genusDendrochilusSchedl inAfromicracisSchedl. Hypoborini appear to be one of the more plausible sistergroup candidates to Micracidini, and revealed morphological similarity in protibial and proventricular characters. Most phylogenetic results were supported independently by morphological and molecular data and therefore document the power of thorough examination of morphological characters analysed properly in a phylogenetic context.

Synonymisation of the male-based ant genus Phaulomyrma (Hymenoptera:Formicidae) with Leptanilla based upon Bayesian total-evidence phylogenetic inference

2021 ◽  
Author(s):  
Zachary H. Griebenow
Keyword(s):  
Sequence Data ◽  
Phylogenetic Inference ◽  
Morphological Characters ◽  
Molecular Data ◽  
Total Evidence ◽  
Morphological Data ◽  
Systematic Revision ◽  
Dna Sequence Data ◽  
Evidence Framework ◽  
Nuclear Loci

Although molecular data have proven indispensable in confidently resolving the phylogeny of many clades across the tree of life, these data may be inaccessible for certain taxa. The resolution of taxonomy in the ant subfamily Leptanillinae is made problematic by the absence of DNA sequence data for leptanilline taxa that are known only from male specimens, including the monotypic genus Phaulomyrma Wheeler & Wheeler. Focusing upon the considerable diversity of undescribed male leptanilline morphospecies, the phylogeny of 35 putative morphospecies sampled from across the Leptanillinae, plus an outgroup, is inferred from 11 nuclear loci and 41 discrete male morphological characters using a Bayesian total-evidence framework, with Phaulomyrma represented by morphological data only. Based upon the results of this analysis Phaulomyrma is synonymised with Leptanilla Emery, and male-based diagnoses for Leptanilla that are grounded in phylogeny are provided, under both broad and narrow circumscriptions of that genus. This demonstrates the potential utility of a total-evidence approach in inferring the phylogeny of rare extant taxa for which molecular data are unavailable and begins a long-overdue systematic revision of the Leptanillinae that is focused on male material.

scholarly journals Phylogeny of the subfamilies of Ichneumonidae (Hymenoptera)

2019 ◽  
Vol 71 ◽  
pp. 1-156 ◽  
Author(s):  
Andrew M.R. Bennett ◽  
Sophie Cardinal ◽  
Ian D. Gauld ◽  
David B. Wahl
Keyword(s):  
Sequence Data ◽  
Elongation Factor ◽  
Parasitoid Wasp ◽  
Sister Group ◽  
Morphological Characters ◽  
Sensu Stricto ◽  
Total Evidence ◽  
Parsimony Analysis ◽  
Bayesian Analyses ◽  
Molecular Sequence Data

A combined morphological and molecular phylogenetic analysis was performed to evaluate the subfamily relationships of the parasitoid wasp family Ichneumonidae (Hymenoptera). Data were obtained by coding 135 morphological and 6 biological characters for 131 exemplar species of ichneumonids and 3 species of Braconidae (the latter as outgroups). The species of ichneumonids represent all of the 42 currently recognized subfamilies. In addition, molecular sequence data (cytochrome oxidase I “DNA barcoding” region, the D2 region of 28S rDNA and part of the F2 copy of elongation factor 1-alpha) were obtained from specimens of the same species that were coded for morphology (1309 base pairs total). The data were analyzed using parsimony and Bayesian analyses. The parsimony analysis using all data recovered previously recognized informal subfamily groupings (Pimpliformes, Ophioniformes, Ichneumoniformes), although the relationships of these three groups to each other differed from previous studies and some of the subfamily relationships within these groupings had not previously been suggested. Specifically, Ophioniformes was the sister group to (Ichneumoniformes + Pimplformes), and Labeninae was placed near Ichneumoniformes, not as sister group to all Ichneumonidae except Xoridinae. The parsimony analysis using only morphological characters was poorly resolved and did not recover any of the three informal subfamily groupings and very few of the relationships were similar to the total-evidence parsimony analysis. The molecular-only parsimony analysis and both Bayesian analyses (total-evidence and molecular-only) recovered Pimpliformes, a restricted Ichneumoniformes grouping and many of the subfamily groupings recovered in the total-evidence parsimony analysis. A comparison and discussion of the results obtained by each phylogenetic method and different data sets is provided. It is concluded that the molecular characters produced results that were relatively consistent with traditional, non-phylogenetic concepts of relationships between the ichneumonid subfamilies, whereas the morphological characters did not (at least not by themselves). The inclusion of both molecular and morphological characters using parsimony produced a topology that was the closest to the traditional subfamily relationships. The method of analysis did not greatly affect the overall topology for the molecular-only analyses, but there were differences between Bayesian and parsimony results for the total-evidence analyses (especially near the root of the tree). The Bayesian results did not seem to be altered very much by the inclusion of morphological characters, unlike in the parsimony analysis. In summary, the following groups were supported in multiple analyses regardless of the characters used or method of tree-building: Pimpliformes, higher Ophioniformes, higher Pimpliformes, (Claseinae + Pedunculinae), (Banchinae + Stilbopinae), Campopleginae, Cremastinae, Diplazontinae, Ichneumoninae (including Alomya), Labeninae, Ophioninae, Poemeniinae, Rhyssinae, and Tersilochinae sensu stricto. Conversely, Ctenopelmatinae and Tryphoninae were never recovered without inclusion of other taxa. Based on the hypothesis of relationships obtained by the total-evidence parsimony analysis, the following formal taxonomic changes are proposed: Alomyinae Förster (= Alomya Panzer and Megalomya Uchida) is once again synonymized with Ichneumoninae and is now considered a tribe (Alomyinirev. stat.); and Notostilbops Townes is transferred from Stilbopinae to Banchinae, tribe Atrophini.

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