Phylogeny and generic taxonomy of the New Zealand Pteridaceae ferns from chloroplast rbcL DNA sequences

2010 ◽  
Vol 23 (3) ◽  
pp. 143 ◽  
Author(s):  
Whitney L. M. Bouma ◽  
Peter Ritchie ◽  
Leon R. Perrie
Keyword(s):  
New Zealand ◽  
South America ◽  
Dna Sequences ◽  
Type Species ◽  
South East Asia ◽  
Taxonomic Change ◽  
Phylogenetic Studies ◽  
The Status ◽  
Molecular Phylogenetic ◽  
Chloroplast Dna Sequences

Previous molecular phylogenetic studies of the species-rich Pteridaceae fern family have revealed that many of its constituent genera are not monophyletic. Within this context, we generated rbcL chloroplast DNA sequences for the 17 Pteridaceae species indigenous to New Zealand to assess how they are related to the type species of their genus. Of the five genera presently recognised in New Zealand, no taxonomic change is needed for the species of Anogramma, or, probably, of Cheilanthes and Pellaea. In contrast, most species presently attributed to Pteris, including those in New Zealand, probably do not belong there. The status of Adiantum remains unclear, although the New Zealand species are not especially closely related to the type species. The Adiantum species in New Zealand belong to a wide-ranging, principally southern hemisphere, clade that appears to be pivotal to resolving the relationships of Adiantum, although it has been little sampled. The closest relatives of the New Zealand species are in Australia and South America for Cheilanthes, Australia and South-east Asia for Pellaea, and the south-western Pacific for both of the Pteris lineages in New Zealand, whereas Anogramma leptophylla (L.) Link is subcosmopolitan.

A review of the fern genus Pellaea (Pteridaceae) in Australasia

2020 ◽  
Author(s):  
Patrick J. Brownsey ◽  
Daniel J. Ohlsen ◽  
Lara D. Shepherd ◽  
Whitney L. M. Bouma ◽  
Erin L. May ◽  
...  
Keyword(s):  
New Zealand ◽  
Chloroplast Dna ◽  
Dna Sequences ◽  
Sequence Data ◽  
Indigenous Species ◽  
Ploidy Levels ◽  
Dna Sequence Data ◽  
Australian Species ◽  
The Status ◽  
Chloroplast Dna Sequences

Five indigenous species of Pellaea in Australasia belong to section Platyloma. Their taxonomic history is outlined, morphological, cytological and genetic evidence for their recognition reviewed, and new morphological and chloroplast DNA-sequence data provided. Australian plants of P. falcata (R.Br.) Fée are diploid and have longer, narrower pinnae than do New Zealand plants previously referred to P. falcata, which are tetraploid. Evidence indicates that P. falcata does not occur in New Zealand, and that collections so-named are P. rotundifolia (G.Forst.) Hook. Chloroplast DNA sequences are uninformative in distinguishing Australian P. falcata from New Zealand P. rotundifolia, but show that Australian P. nana is distinct from both. Sequence data also show that Australian and New Zealand populations of P. calidirupium Brownsey & Lovis are closely related, and that Australian P. paradoxa (R.Br.) Hook. is distinct from other Australian species. Although P. falcata is diploid and P. rotundifolia tetraploid, P. calidirupium, P. nana (Hook.) Bostock and P. paradoxa each contain multiple ploidy levels. Diploid populations of Pellaea species are confined to Australia, and only tetraploids are known in New Zealand. Evolution of the group probably involved hybridisation, autoploidy, alloploidy, and possibly apomixis. Further investigation is required to resolve the status of populations from Mount Maroon, Queensland and the Kermadec Islands.

Paracarphalea, a new genus of the coffee family segregated from the Malagasy endemic genus Carphalea (Rubiaceae, Rubioideae, Knoxieae)

Phytotaxa ◽  
2016 ◽  
Vol 263 (2) ◽  
pp. 98 ◽  
Author(s):  
JULIA FERM ◽  
JESPER KÅREHED ◽  
BIRGITTA BREMER ◽  
SYLVAIN G. RAZAFIMANDIMBISON
Keyword(s):  
Bayesian Methods ◽  
Type Species ◽  
New Genus ◽  
Sequence Data ◽  
Conservation Status ◽  
Endemic Genus ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
Nuclear Its ◽  
Iucn Criteria

The Malagasy genus Carphalea (Rubiaceae) consists of six species (C. angulata, C. cloiselii, C. kirondron, C. linearifolia, C. madagascariensis, C. pervilleana) of shrubs or small trees and is recognizable by a distinctly lobed calyx, 2(–4)-locular ovaries, each locule with several ovules on a rod-like stalk arising from the base of the locule, and indehiscent fruits. Carphalea linearifolia, rediscovered in 2010, has not previously been included in any Rubiaceae molecular phylogenetic studies. We re-investigated the monophyly of Carphalea using sequence data from chloroplast (rps16 and trnT-F) and nuclear (ITS and ETS) markers analysed with parsimony and Bayesian methods. Carphalea linearifolia forms a clade with C. cloiselii and the type species C. madagascariensis. This clade is sister to a clade consisting of the rest of the Carphalea species plus the genus Triainolepis. According to these results, the new genus Paracarphalea is here described to accommodate Carphalea angulata, C. kirondron, and C. pervilleana. The conservation status of Carphalea linearifolia is assessed as critically endangered according to IUCN criteria.

The Cretaceous and Paleocene pleurotomariid (Gastropoda: Vetigastropoda) fauna of Seymour Island, Antarctica

2009 ◽  
Vol 83 (5) ◽  
pp. 750-766 ◽  
Author(s):  
M. G. Harasewych ◽  
Anton Oleinik ◽  
William Zinsmeister
Keyword(s):  
Species Richness ◽  
New Zealand ◽  
South America ◽  
Late Cretaceous ◽  
Upper Cretaceous ◽  
Southern India ◽  
New Combination ◽  
The Family ◽  
The Status ◽  
Seymour Island

Leptomaria antipodensis and Leptomaria hickmanae are described from the Upper Cretaceous [Maastrichtian] Lopez de Bertodano Formation, Seymour Island, and represent the first Mesozoic records of the family Pleurotomariidae from Antarctica. Leptomaria stillwelli, L. seymourensis, Conotomaria sobralensis and C. bayeri, from the Paleocene [Danian], Sobral Formation, Seymour Island, are described as new. Leptomaria larseniana (Wilckens, 1911) new combination, also from the Sobral Formation, is redescribed based on better-preserved material. The limited diversity of the pleurotomariid fauna of Seymour Island is more similar to that of the Late Cretaceous faunas of Australia and New Zealand in terms of the number of genera and species, than to the older, more diverse faunas of South America, southern India, or northwestern Madagascar, supporting the status of the Weddelian Province as a distinct biogeographic unit. The increase in the species richness of this fauna during the Danian may be due to the final fragmentation of Gondwana during this period.

scholarly journals Marrying molecules and morphology: first steps towards a reevaluation of solariellid genera (Gastropoda: Trochoidea) in the light of molecular phylogenetic studies

2020 ◽  
Vol 86 (1) ◽  
pp. 1-26
Author(s):  
S T Williams ◽  
Y Kano ◽  
A Warén ◽  
D G Herbert
Keyword(s):  
Type Species ◽  
Morphological Characters ◽  
Shell Shape ◽  
Molecular Systematic ◽  
The Past ◽  
Phylogenetic Studies ◽  
Clade B ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Anatomical Characters

ABSTRACT The assignment of species to the vetigastropod genus Solariella Wood, 1842, and therefore the family Solariellidae Powell, 1951, is complicated by the fact that the type species (Solariella maculata Wood, 1842) is a fossil described from the Upper Pliocene. Assignment of species to genera has proved difficult in the past, and the type genus has sometimes acted as a ‘wastebasket’ for species that cannot easily be referred to another genus. In the light of a new systematic framework provided by two recent publications presenting the first molecular phylogenetic data for the group, we reassess the shell characters that are most useful for delimiting genera. Shell characters were previously thought to be of limited taxonomic value above the species level, but this is far from the case. Although overall shell shape is not a reliable character, our work shows that shell characters, along with radular and anatomical characters, are useful for assigning species to genera. Sculpture of the early teleoconch (the region immediately following the protoconch) and the columella are particularly useful characters that have not been used regularly in the past to distinguish genera. However, even with the combination of all morphological characters used in this study (shell, radular and eye), a few species are still difficult to assign to genera and in such cases molecular systematic data are essential. In the present study, we discuss 13 genera—12 of which were recovered as well-supported clades in recent molecular systematic studies—and provide morphological characters to distinguish them. We describe several new taxa: Chonospeira n. gen. (referred to as ‘clade B’ in previous molecular systematic studies), Phragmomphalina n. gen. (Bathymophila in part in molecular systematic studies) and Phragmomphalina vilvensi n. sp. (type species of Phragmomphalina n. gen.). We synonymize Hazuregyra Shikama, 1962 with Minolia A. Adams, 1860, Minolia subangulata Kuroda & Habe, 1952 with Minolia punctata A. Adams, 1860 and M. gemmulata Kuroda & Habe, 1971 with M. shimajiriensis (MacNeil, 1960). We also present the following new combinations: Bathymophila bairdii (Dall, 1889), B. dawsoni (Marshall, 1979), B. regalis (Marshall, 1999), B. wanganellica (Marshall, 1999), B. ziczac (Kuroda & Habe in Kuroda, Habe & Oyama, 1971), Chonospeira nuda (Dall, 1896), C. iridescens (Habe, 1961), C. ostreion (Vilvens, 2009), C. strobilos (Vilvens, 2009), Elaphriella corona (Lee & Wu, 2001), E. diplax (Marshall, 1999), E. meridiana (Marshall, 1999), E. olivaceostrigata (Schepman, 1908), E. opalina (Shikama & Hayashi, 1977), Ilanga norfolkensis (Marshall, 1999), I. ptykte (Vilvens, 2009), I. zaccaloides (Vilvens, 2009), Minolia shimajiriensis (MacNeil, 1960), M. watanabei (Shikama, 1962), Phragmomphalina alabida (Marshall, 1979), P. diadema (Marshall, 1999), P. tenuiseptum (Marshall, 1999), Spectamen euteium (Vilvens, 2009), S. basilicum (Marshall, 1999), S. exiguum (Marshall, 1999) and S. flavidum (Marshall, 1999).

On the status of the snake genera Erythrolamprus Boie, Liophis Wagler and Lygophis Fitzinger (Serpentes, Xenodontinae)

Zootaxa ◽  
2009 ◽  
Vol 2173 (1) ◽  
pp. 66-68 ◽  
Author(s):  
FELIPE F. CURCIO ◽  
VÍTOR DE Q. PIACENTINI ◽  
DANIEL S. FERNANDES
Keyword(s):  
Phylogenetic Relationships ◽  
Molecular Evidence ◽  
South American ◽  
Phylogenetic Studies ◽  
The Status ◽  
Molecular Phylogenetic ◽  
Recent Debate ◽  
The Subject

The genus Erythrolamprus Boie (1826) comprises six species of Central and South American false coral snakes (Peters & Orejas-Miranda 1970; Zaher 1999; Curcio et al. 2009). It is traditionally allocated in the tribe Xenodontini (subfamily Xenodontinae), along with the genera Liophis, Lystrophis, Umbrivaga, Waglerophis and Xenodon (sensu Dixon 1980; Cadle 1984; Myers 1986; Ferrarezzi 1994; Zaher 1999). Although Xenodontini is supported by morphological and molecular evidence, phylogenetic relationships and classification within the tribe have been the subject of recent debate. Molecular phylogenetic studies have recovered clades with Erythrolamprus nested within some representatives of the genus Liophis (Vidal et al. 2000; Zaher et al. 2009), partly corroborating previous hypotheses based on morphology (e.g. Dixon 1980).

Analysis of the genus Sunamphitoe Spence Bate, 1857 (Amphipoda: Ampithoidae) with descriptions of eight new species

Zootaxa ◽  
2017 ◽  
Vol 4269 (3) ◽  
pp. 301 ◽  
Author(s):  
RACHAEL A. PEART
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
New Zealand ◽  
Phylogenetic Analyses ◽  
Senior Synonym ◽  
The Status ◽  
Molecular Phylogenetic ◽  
Algal Host

Sunamphitoe Spence Bate, 1857 is one of several ampithoid amphipod genera to be reasonably specific to its algal host. Sunamphitoe was recently shown to be a senior synonym of Peramphithoe Conlan & Bousfield, 1982 by both morphological and molecular phylogenetic analyses that included selected exemplars of both putative genera. Phylogenetic analysis considering all species of Sunamphitoe herein corroborates the validity of this synonymy and also delineates several morphological groups within the genus. Eight new species are descibed herein, Sunamphitoe angrox sp. nov., S. batavia sp. nov., S. dampierensis sp. nov., S. jonathani sp. nov., S. lehae sp. nov., S. mixtura sp. nov., S. naturaliste sp. nov., and S. stevesmithi sp. nov., all from Australia and New Zealand; the status of the problematic New Zealand species, Sunamphitoe aorangi is resolved.

scholarly journals ULASAN Kajian Filogenetika Molekuler dan Peranannya dalam Menyediakan Informasi Dasar untuk Meningkatkan Kualitas Sumber Genetik Anggrek

2016 ◽  
Vol 4 (1) ◽  
pp. 35 ◽  
Author(s):  
Topik Hidayat ◽  
Adi Pancoro
Keyword(s):  
Dna Sequences ◽  
Molecular Phylogenetics ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Biochemical Properties ◽  
Intergeneric Hybrids ◽  
Basic Knowledge ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
Ornamental Crops

<p>Early information<br />resulted from molecular phylogenetic studies of many important<br />ornamental crops is often less attention to many<br />growers and farmers. Phylogenetics is one of the most preferable<br />method in systematics to reconstruct evolutionary<br />relationships of groups of biological organisms in order to<br />understand their biodiversities. This has been revolutionized<br />by DNA sequences data. In this method, a group of organisms<br />that shares many identical characteristics are considered<br />to be closely related; deriving from a common<br />ancestor and is assumed to have similar genetic patterns<br />and biochemical properties. By these basic principles,<br />molecular phylogenetics plays important roles in revealing a<br />basic knowledge on pattern of relationships to which<br />genetic resources can be improved. Over the past decade,<br />botanists have done several thousand phylogenetic analyses<br />based on molecular data of economically and horticulturally<br />important crops. Orchids are the best example for this.<br />There is no doubt that most orchid plants had played roles in<br />horticulture and hybridization. At present, many infrageneric<br />and intergeneric hybrids are available commercially. Successful<br />hybridization can be achieved if two or more individual<br />plants understudy are closely related in respect to their<br />genetics and evolution.</p>

scholarly journals Systematics of the spider subfamily Hexathelinae (Dipluridae : Mygalomorphae : Arachnida)

1978 ◽  
Vol 26 (4) ◽  
pp. 841
Author(s):  
RJ Raven
Keyword(s):  
New Species ◽  
New Zealand ◽  
South America ◽  
Type Species ◽  
Sister Group ◽  
New Genera ◽  
Australian Species ◽  
To Receive

Two new genera, Plesiothele and Bymainiella, are erected to receive all the Australian species of the subfamily Hexathelinae, which now comprises four genera, including Hexathele with 20 species from New Zealand, and Scotinoecus with two species from South America. Plesiothele is a monotypic Tasmanian genus, type-species Hexathele fentoni Hickman, 1936. Bymainiella comprises 12 new species: B. boycei, B. boydi, B. brindabella, B. cannoni, B. grayi, B. lugubris, B. monteithi, B. montisbossi, B. otwayensis, B. polesoni, B. tubrabucca and B. variabilis; also B. montana (Hickman, 1927), and B. terraereginae (Raven, 1976), the latter being the type-species. The typespecies of Scotinoecus, S. cinereopilosus, is redescribed, and keys to the genera of the subfamily Hexathelinae, and to the Bymainiella species, are given. Two new indices are introduced to overcome the problem of bilateral variability. Bymainiella is believed to be the sister group of Scotinoecus.

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