scholarly journals CRISPR screens for lipid regulators reveal a role for ER-bound SNX13 in lysosomal cholesterol export

2021 ◽  
Vol 221 (2) ◽  
Author(s):  
Albert Lu ◽  
Frank Hsieh ◽  
Bikal R. Sharma ◽  
Sydney R. Vaughn ◽  
Carlos Enrich ◽  
...  
Keyword(s):  
Lipid Droplet ◽  
Negative Regulator ◽  
Gene Products ◽  
Membrane Contact Sites ◽  
Contact Sites ◽  
Genome Wide ◽  
Lipid Regulators ◽  
Membrane Contact ◽  
Lysosome Membrane ◽  
Insight Into

We report here two genome-wide CRISPR screens performed to identify genes that, when knocked out, alter levels of lysosomal cholesterol or bis(monoacylglycero)phosphate. In addition, these screens were also performed under conditions of NPC1 inhibition to identify modifiers of NPC1 function in lysosomal cholesterol export. The screens confirm tight coregulation of cholesterol and bis(monoacylglycero)phosphate in cells and reveal an unexpected role for the ER-localized SNX13 protein as a negative regulator of lysosomal cholesterol export and contributor to ER–lysosome membrane contact sites. In the absence of NPC1 function, SNX13 knockdown redistributes lysosomal cholesterol and is accompanied by triacylglycerol-rich lipid droplet accumulation and increased lysosomal bis(monoacylglycero)phosphate. These experiments provide unexpected insight into the regulation of lysosomal lipids and modification of these processes by novel gene products.

scholarly journals CRISPR screens for lipid regulators reveal a role for ER-bound SNX13 in lysosomal cholesterol export

2021 ◽  
Author(s):  
Albert Lu ◽  
Frank Hsieh ◽  
Carlos Enrich ◽  
Suzanne R. Pfeffer
Keyword(s):  
Lipid Droplet ◽  
Negative Regulator ◽  
Gene Products ◽  
Novel Gene ◽  
Genome Wide ◽  
Lipid Regulators ◽  
Insight Into ◽  
In Cells

We report here two genome-wide CRISPR screens carried out to identify genes that when knocked out, alter levels of lysosomal cholesterol or bis(monoacylglycero)phosphate. In addition, these screens were also carried out under conditions of NPC1 inhibition to identify modifiers of NPC1 function in lysosomal cholesterol export. The screens confirm tight co-regulation of cholesterol and bis(monoacylglycero)phosphate levels in cells, and reveal an unexpected role for the ER-localized, SNX13 protein as a negative regulator of lysosomal cholesterol export. In the absence of NPC1 function, SNX13 knockout decreases lysosomal cholesterol, and is accompanied by triacylglycerol-rich lipid droplet accumulation and increased lysosomal bis(monoacylglycero)phosphate. These experiments provide unexpected insight into the regulation of lysosomal lipids and modification of these processes by novel gene products.

scholarly journals Mdm1/Snx13 is a novel ER–endolysosomal interorganelle tethering protein

2015 ◽  
Vol 210 (4) ◽  
pp. 541-551 ◽  
Author(s):  
W. Mike Henne ◽  
Lu Zhu ◽  
Zsolt Balogi ◽  
Christopher Stefan ◽  
Jeffrey A. Pleiss ◽  
...  
Keyword(s):  
Neurological Disease ◽  
Lipid Binding ◽  
Sphingolipid Metabolism ◽  
Membrane Contact Sites ◽  
Contact Sites ◽  
Effector Genes ◽  
Px Domain ◽  
In Trans ◽  
Membrane Contact ◽  
Lysosome Membrane

Although endolysosomal trafficking is well defined, how it is regulated and coordinates with cellular metabolism is unclear. To identify genes governing endolysosomal dynamics, we conducted a global fluorescence-based screen to reveal endomembrane effector genes. Screening implicated Phox (PX) domain–containing protein Mdm1 in endomembrane dynamics. Surprisingly, we demonstrate that Mdm1 is a novel interorganelle tethering protein that localizes to endoplasmic reticulum (ER)–vacuole/lysosome membrane contact sites (MCSs). We show that Mdm1 is ER anchored and contacts the vacuole surface in trans via its lipid-binding PX domain. Strikingly, overexpression of Mdm1 induced ER–vacuole hypertethering, underscoring its role as an interorganelle tether. We also show that Mdm1 and its paralogue Ydr179w-a (named Nvj3 in this study) localize to ER–vacuole MCSs independently of established tether Nvj1. Finally, we find that Mdm1 truncations analogous to neurological disease–associated SNX14 alleles fail to tether the ER and vacuole and perturb sphingolipid metabolism. Our work suggests that human Mdm1 homologues may play previously unappreciated roles in interorganelle communication and lipid metabolism.

scholarly journals The endoplasmic reticulum-mitochondria encounter structure: coordinating lipid metabolism across membranes

2020 ◽  
Vol 401 (6-7) ◽  
pp. 811-820 ◽  
Author(s):  
Benoît Kornmann
Keyword(s):  
Endoplasmic Reticulum ◽  
Bacterial Symbiont ◽  
Exact Role ◽  
Intracellular Lipid ◽  
Lipid Trafficking ◽  
Membrane Contact Sites ◽  
Contact Sites ◽  
Membrane Tethering ◽  
Membrane Contact ◽  
Insight Into

AbstractEndosymbiosis, the beginning of a collaboration between an archaeon and a bacterium and a founding step in the evolution of eukaryotes, owes its success to the establishment of communication routes between the host and the symbiont to allow the exchange of metabolites. As far as lipids are concerned, it is the host that has learnt the symbiont’s language, as eukaryote lipids appear to have been borrowed from the bacterial symbiont. Mitochondria exchange lipids with the rest of the cell at membrane contact sites. In fungi, the endoplasmic reticulum-mitochondria encounter structure (ERMES) is one of the best understood membrane tethering complexes. Its discovery has yielded crucial insight into the mechanisms of intracellular lipid trafficking. Despite a wealth of data, our understanding of ERMES formation and its exact role(s) remains incomplete. Here, I endeavour to summarise our knowledge on the ERMES complex and to identify lingering gaps.

scholarly journals Getting a handle on lipid droplets: Insights into ER–lipid droplet tethering

2019 ◽  
Vol 218 (4) ◽  
pp. 1089-1091 ◽  
Author(s):  
Truc B. Nguyen ◽  
James A. Olzmann
Keyword(s):  
Endoplasmic Reticulum ◽  
Lipid Metabolism ◽  
Lipid Droplet ◽  
Lipid Droplets ◽  
Human Cells ◽  
Membrane Contact Sites ◽  
Contact Sites ◽  
Cell Biol ◽  
Membrane Contact

Lipid droplets (LDs) are hubs for lipid metabolism that form membrane contact sites with multiple organelles. In this issue, Hariri et al. (2019. J. Cell Biol. https://doi.org/10.1083/jcb.201808119) reveal the functions of Mdm1-mediated endoplasmic reticulum (ER)–LD tethering in yeast and Datta et al. (2019. J. Cell Biol. https://doi.org/10.1083/jcb.201808133) identify a role for the Mdm1 orthologue, Snx14, as an ER–LD tether that regulates lipid metabolism in human cells.

scholarly journals Perspectives on Mitochondria–ER and Mitochondria–Lipid Droplet Contact in Hepatocytes and Hepatic Lipid Metabolism

Cells ◽  
2021 ◽  
Vol 10 (9) ◽  
pp. 2273
Author(s):  
Xiaowen Ma ◽  
Hui Qian ◽  
Allen Chen ◽  
Hong-Min Ni ◽  
Wen-Xing Ding
Keyword(s):  
Lipid Metabolism ◽  
Liver Disease ◽  
Lipid Droplet ◽  
Alcoholic Fatty Liver ◽  
Membrane Contact Sites ◽  
Contact Sites ◽  
Intracellular Organelles ◽  
Membrane Contact ◽  
Related Liver Disease ◽  
Organelle Communication

Emerging evidence suggests that mitochondrion–endoplasmic reticulum (ER) and mitochondrion–lipid droplet (LD) contact sites are critical in regulating lipid metabolism in cells. It is well established that intracellular organelles communicate with each other continuously through membrane contact sites to maintain organelle function and cellular homeostasis. The accumulation of LDs in hepatocytes is an early indicator of non-alcoholic fatty liver disease (NAFLD) and alcohol-related liver disease (ALD), which may indicate a breakdown in proper inter-organelle communication. In this review, we discuss previous findings in mitochondrion–ER and mitochondrion–LD contact, focusing on their roles in lipid metabolism in hepatocytes. We also present evidence of a unique mitochondrion–LD contact structure in hepatocytes under various physiological and pathological conditions and propose a working hypothesis to speculate about the role of these structures in regulating the functions of mitochondria and LDs and their implications in NAFLD and ALD.

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