scholarly journals Complete Genome Sequences of Chesapeake Bay Synechococcus Strains CBW1002 and CBW1006 Isolated in Winter

2021 ◽  
Vol 13 (2) ◽  
Author(s):  
Daniel Fucich ◽  
Yongle Xu ◽  
Ana Sosa ◽  
Yufeng Jia ◽  
Rui Zhang ◽  
...  
Keyword(s):  
Chesapeake Bay ◽  
Environmental Conditions ◽  
Complete Genome ◽  
Genome Sequences ◽  
Cold Temperatures ◽  
Cold Adapted ◽  
Cosmopolitan Distribution ◽  
Complete Genomes ◽  
Phylogenetic Lineages ◽  
Insight Into

Abstract Synechococcus are picocyanobacteria with a cosmopolitan distribution. They are capable of surviving in a wide variety of environmental conditions. Synechococcus have been isolated from the Chesapeake Bay during winter months, and they show an impressive tolerance to cold temperatures. Cold-adapted Synechococcus are unique and diverse, as they have complex phylogenetic lineages closely related to subalpine cluster II, Bornholm Sea cluster, CB7 cluster, and some novel lineages which are independent from summer estuarine strains in subcluster 5.2. CBW1002 and CBW1006 are the first complete genomes to represent Bornholm Sea cluster Synechococcus strains. They have some of the largest genomes among the Synechococcus (3.8 Mb) and share many unique and cryptic homologs which could give insight into their ability to tolerate such cold and dynamic conditions in the Chesapeake Bay estuary.

scholarly journals Complete Genome Sequences of Six Novel Macaca mulatta Papillomavirus Types Isolated from Genital Sites of Rhesus Monkeys in Hong Kong SAR, China

2018 ◽  
Vol 7 (22) ◽  
Author(s):  
Teng Long ◽  
Po Yee Wong ◽  
Wendy C. S. Ho ◽  
Robert D. Burk ◽  
Paul K. S. Chan ◽  
...  
Keyword(s):  
Hong Kong ◽  
Macaca Mulatta ◽  
Complete Genome ◽  
Rhesus Monkeys ◽  
Genome Sequences ◽  
Content Type ◽  
Complete Genomes ◽  
Hong Kong Sar

The complete genomes of six Macaca mulatta papillomavirus types isolated from genital sites of rhesus monkeys were characterized, and less than 72% identity with the complete L1 genes of known papillomaviruses was found. Macaca mulatta papillomavirus type 2 (MmPV2), MmPV3, and MmPV6 cluster into the genus Alphapapillomavirus, and MmPV4, MmPV5, and MmPV7 cluster into the genus Gammapapillomavirus.

scholarly journals Complete Genome Sequences of Two Human Oral Microbiome Commensals: Streptococcus salivarius ATCC 25975 and S. salivarius ATCC 27945

2017 ◽  
Vol 5 (24) ◽  
Author(s):  
Robert R. Butler ◽  
Jahna T. A. Soomer-James ◽  
Michel Frenette ◽  
Jean-François Pombert
Keyword(s):  
Complete Genome ◽  
Oral Microbiome ◽  
Streptococcus Salivarius ◽  
Genome Sequences ◽  
Content Type ◽  
Complete Genomes

ABSTRACT Streptococcus salivarius strains are significant contributors to the human oral microbiome. Some possess unique fimbriae that give them the ability to coaggregate and colonize particular oral structures. We present here the complete genomes of Streptococcus salivarius Lancefield K−/K+ strains ATCC 25975 and ATCC 27945, which can and cannot, respectively, produce fimbriae.

scholarly journals Complete Genome Sequences of Vibrio cholerae-Specific Bacteriophages 24 and X29

2017 ◽  
Vol 5 (46) ◽  
Author(s):  
Sudhakar G. Bhandare ◽  
Andrew Warry ◽  
Richard D. Emes ◽  
Steven P. T. Hooton ◽  
Paul A. Barrow ◽  
...  
Keyword(s):  
Vibrio Cholerae ◽  
Genome Size ◽  
Complete Genome ◽  
Phage Therapy ◽  
Genome Sequences ◽  
Content Type ◽  
Potential Interest ◽  
Complete Genomes

ABSTRACT The complete genomes of two Vibrio cholerae bacteriophages of potential interest for cholera bacteriophage (phage) therapy were sequenced and annotated. The genome size of phage 24 is 44,395 bp encoding 71 putative proteins, and that of phage X29 is 41,569 bp encoding 68 putative proteins.

scholarly journals Complete Genome Sequences of Three Listeria monocytogenes Bacteriophage Propagation Strains

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Lauren K. Hudson ◽  
Tracey Lee Peters ◽  
Daniel W. Bryan ◽  
Yaxiong Song ◽  
Henk C. den Bakker ◽  
...  
Keyword(s):  
Listeria Monocytogenes ◽  
Complete Genome ◽  
Experimental Studies ◽  
Foodborne Pathogen ◽  
Genome Sequences ◽  
Content Type ◽  
Complete Genomes

ABSTRACT Bacteriophages can be used as a biocontrol for the foodborne pathogen Listeria monocytogenes. Propagation of phages is a necessary step for their use in experimental studies and biocontrol applications. Here, we present the complete genomes of three Listeria monocytogenes strains commonly used as propagation hosts for Listeria phages.

scholarly journals Complete Genome Sequences of the Escherichia coli Donor Strains ST18 and MFDpir

2020 ◽  
Vol 9 (45) ◽  
Author(s):  
Simon A. Jackson ◽  
Bridget J. Fellows ◽  
Peter C. Fineran
Keyword(s):  
Escherichia Coli ◽  
Complete Genome ◽  
Nanopore Sequencing ◽  
Genome Sequences ◽  
Content Type ◽  
E Coli ◽  
Genetic Manipulations ◽  
Complete Genomes

ABSTRACT Escherichia coli ST18 and MFDpir are donors commonly used to transfer oriTRP4-containing plasmids to diverse bacteria via conjugation. ST18 and MFDpir were constructed via multiple genetic manipulations involving several E. coli strains. Here, we used Illumina and Nanopore sequencing to determine the complete genomes of these widely used strains.

scholarly journals Complete Genome Sequences of Two Listeria Phages of the Genus Pecentumvirus

2019 ◽  
Vol 8 (46) ◽  
Author(s):  
Tracey L. Peters ◽  
Lauren K. Hudson ◽  
Yaxiong Song ◽  
Thomas G. Denes
Keyword(s):  
Listeria Monocytogenes ◽  
Complete Genome ◽  
Foodborne Pathogen ◽  
Genome Sequences ◽  
Content Type ◽  
Complete Genomes

Bacteriophages isolated from environmental sources can be used as a biocontrol against the foodborne pathogen Listeria monocytogenes. Here, we present the complete genomes of LP-039 and LP-066, two Pecentumvirus bacteriophages that infect L. monocytogenes. The genome sizes of LP-039 and LP-066 are 136.2 kb and 139.0 kb, respectively.

scholarly journals Complete Genome Sequences of Cellvibrio japonicus Strains with Improved Growth When Using α-Diglucosides

2019 ◽  
Vol 8 (44) ◽  
Author(s):  
Cecelia A. Garcia ◽  
Jackson A. Narrett ◽  
Jeffrey G. Gardner
Keyword(s):  
Complete Genome ◽  
Growth Characteristics ◽  
Metabolic Flexibility ◽  
Genome Sequences ◽  
Additional Insight ◽  
Content Type ◽  
Carbohydrate Degradation ◽  
Cellvibrio Japonicus ◽  
Insight Into

Cellvibrio japonicus is a saprophytic bacterium that has been studied for its substantial carbohydrate degradation capability. We announce the genome sequences of three strains with improved growth characteristics when utilizing α-diglucosides. These data provide additional insight into the metabolic flexibility of a biotechnologically relevant bacterium.

scholarly journals Complete Genome Sequences of 47 Environmental Isolates of Escherichia coli

2020 ◽  
Vol 9 (38) ◽  
Author(s):  
Georgia Breckell ◽  
Olin K. Silander
Keyword(s):  
Escherichia Coli ◽  
Complete Genome ◽  
Environmental Isolates ◽  
Genome Sequences ◽  
Content Type ◽  
Genetic Elements ◽  
Complete Genomes

ABSTRACT Escherichia coli is commonly considered a host-associated bacterium. However, there is evidence that some strains occupy environmental (non-host-associated) niches. Here, we report the complete genomes of 47 Escherichia coli environmental isolates. These will be useful for understanding the dynamics of plasmids, phages, and other repetitive genetic elements.

scholarly journals Complete Genome Sequences of Three Bacillus anthracis Bacteriophages

2018 ◽  
Vol 6 (1) ◽  
Author(s):  
Sivan Alkalay ◽  
Sarit Sternberg ◽  
Shunit Coppenhagen-Glazer ◽  
Ronen Hazan
Keyword(s):  
Bacillus Anthracis ◽  
Complete Genome ◽  
Phage Therapy ◽  
Soil Samples ◽  
Genome Sequences ◽  
Complete Genomes ◽  
Highly Effective ◽  
Potential Use ◽  
Therapy Treatment

ABSTRACT The new highly effective Bacillus anthracis phages Negev_SA, Carmel_SA, and Tavor_SA were isolated from soil samples, and their complete genomes were sequenced and analyzed. The isolated phages have potential use in future phage therapy treatment against anthrax.

scholarly journals Complete Genome Sequences of Four Isolates of Plutella xylostella Granulovirus

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Robert J. Spence ◽  
Christopher Noune ◽  
Caroline Hauxwell
Keyword(s):  
Plutella Xylostella ◽  
Complete Genome ◽  
Sequence Variation ◽  
Insect Pest ◽  
Diamondback Moth ◽  
Genome Sequences ◽  
Equivalent Length ◽  
Complete Genomes

Granuloviruses are widespread pathogens of Plutella xylostella L. (diamondback moth) and potential biopesticides for control of this global insect pest. We report the complete genomes of four Plutella xylostella granulovirus isolates from China, Malaysia, and Taiwan exhibiting pairs of noncoding, homologous repeat regions with significant sequence variation but equivalent length.

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