scholarly journals Coevolution of theS-Locus GenesSRK,SLGandSP11/SCRinBrassica oleraceaandB. rapa

Genetics ◽  
2002 ◽  
Vol 162 (2) ◽  
pp. 931-940 ◽  
Author(s):  
Keiichi Sato ◽  
Takeshi Nishio ◽  
Ryo Kimura ◽  
Makoto Kusaba ◽  
Tohru Suzuki ◽  
...  

AbstractBrassica self-incompatibility (SI) is controlled by SLG and SRK expressed in the stigma and by SP11/SCR expressed in the anther. We determined the sequences of the S domains of 36 SRK alleles, 13 SLG alleles, and 14 SP11 alleles from Brassica oleracea and B. rapa. We found three S haplotypes lacking SLG genes in B. rapa, confirming that SLG is not essential for the SI recognition system. Together with reported sequences, the nucleotide diversities per synonymous and nonsynonymous site (πS and πN) at the SRK, SLG, and SP11 loci within B. oleracea were computed. The ratios of πN:πS for SP11 and the hypervariable region of SRK were significantly >1, suggesting operation of diversifying selection to maintain the diversity of these regions. In the phylogenetic trees of 12 SP11 sequences and their linked SRK alleles, the tree topology was not significantly different between SP11 and SRK, suggesting a tight linkage of male and female SI determinants during the evolutionary course of these haplotypes. Genetic exchanges between SLG and SRK seem to be frequent; three such recent exchanges were detected. The evolution of S haplotypes and the effect of gene conversion on self-incompatibility are discussed.

2019 ◽  
Vol 51 (7) ◽  
pp. 723-733 ◽  
Author(s):  
Songmei Shi ◽  
Qiguo Gao ◽  
Tonghong Zuo ◽  
Zhenze Lei ◽  
Quanming Pu ◽  
...  

Abstract Armadillo repeat containing 1 (ARC1) is phosphorylated by S-locus receptor kinase (SRK) and functions as a positive regulator in self-incompatibility response of Brassica. However, ARC1 only causes partial breakdown of the self-incompatibility response, and other SRK downstream factors may also participate in the self-incompatibility signaling pathway. In the present study, to search for SRK downstream targets, a plant U-box protein 3 (BoPUB3) was identified from the stigma of Brassica oleracea L. BoPUB3 was highly expressed in the stigma, and its expression was increased with the stigma development and reached to the highest level in the mature-stage stigma. BoPUB3, a 76.8-kDa protein with 697 amino acids, is a member of the PUB-ARM family and contains three domain characteristics of BoARC1, including a U-box N-terminal domain, a U-box motif, and a C-terminal arm repeat domain. The phylogenic tree showed that BoPUB3 was close to BoARC1. The synteny analysis revealed that B. oleracea chromosomal region containing BoPUB3 had high synteny with the Arabidopsis thaliana chromosomal region containing AtPUB3 (At3G54790). In addition, the subcellular localization analysis showed that BoPUB3 primarily localized in the plasma membrane and also in the cytoplasm. The combination of the yeast two-hybrid and in vitro binding assay showed that both BoPUB3 and BoARC1 could interact with SRK kinase domain, and SRK showed much higher level of β-galactosidase activity in its interaction with BoPUB3 than with BoARC1. These results implied that BoPUB3 is a novel interactor with SRK, which lays a basis for further research on whether PUB3 participates in the self-incompatibility signaling pathway.


2019 ◽  
Vol 29 (1) ◽  
pp. 1275-1282
Author(s):  
Shipra J. Arora ◽  
Rishipal Singh

Abstract The paper represents a Punjabi corpus in the agriculture domain. There are various dialects in the Punjabi language and the main concentration is on major dialects, i.e. Majhi, Malwai and Doabi for the present study. A speech corpus of 125 isolated words is taken into consideration. These words are uttered by 100 speakers, i.e. 60 Malwi dialect speakers (30 male and 30 female), 20 Majhi dialect speakers (10 male and 10 female) and 20 Doabi dialect speakers (10 male and 10 female). Tonemes, adhak (geminated) and nasal words are selected from the corpus. Recordings have been processed through two mediums. The paper also elaborates some distinctive features of the corpus. This corpus is of quite significance for the speech recognition system. Prosodic characteristics such as intonation, rhythm and stress create a crucial impact on the speech recognition system. These characteristics vary from language to language as well as various dialects of a language. This paper portrays a comparative analysis of isolated words prosodic features of Malwi, Majhi and Doabi dialects of Punjabi language. Analysis is done using the PRAAT tool. Pitch, intensity, formant I and formant II values are extracted for toneme, adhak, nasal (bindi) and nasal (tippi) words. For all kinds of words, there is a significant variation in pitch (fundamental frequency), intensity, formant I and formant II values of male and female speakers of Malwi, Majhi and Doabi dialects. A detailed analysis has been discussed throughout this paper.


Science ◽  
2019 ◽  
Vol 364 (6435) ◽  
pp. 86-89 ◽  
Author(s):  
James W. Lightfoot ◽  
Martin Wilecki ◽  
Christian Rödelsperger ◽  
Eduardo Moreno ◽  
Vladislav Susoy ◽  
...  

Self-recognition is observed abundantly throughout the natural world, regulating diverse biological processes. Although ubiquitous, often little is known of the associated molecular machinery, and so far, organismal self-recognition has never been described in nematodes. We investigated the predatory nematode Pristionchus pacificus and, through interactions with its prey, revealed a self-recognition mechanism acting on the nematode surface, capable of distinguishing self-progeny from closely related strains. We identified the small peptide SELF-1, which is composed of an invariant domain and a hypervariable C terminus, as a key component of self-recognition. Modifications to the hypervariable region, including single–amino acid substitutions, are sufficient to eliminate self-recognition. Thus, the P. pacificus self-recognition system enables this nematode to avoid cannibalism while promoting the killing of competing nematodes.


1993 ◽  
Vol 339 (1288) ◽  
pp. 147-157 ◽  

Plant reproduction comprises an interlocking array of developmental pathways which include the formation of the sexual organs, the generation of germ lines de novo , and the operation of the mechanisms which regulate epigenetic imprinting and the system of self-incompatibility found in m any angiosperms. Little is known of how these processes are regulated at a molecular level, with the exception of the floral organs which are determined by families of homeotic genes operating in a heterochronic fashion. In dioecious and monoecious plants the expression of these ‘floral’ genes must be modulated by sexdeterm ination sequences, situated in some circumstances on sex chromosomes. Older, physiological data indicate that sex can be determined by growth regulators, particularly gibberellic acid (GA) and cytokinins, and it is possible that sex-determination genes establish local concentrations of growth regulators at the apex, which in turn influence the expression of the homeotic floral genes. Evidence from anther development indicates genes involved in differentiation of the male and female germ lines to be regulated by defined promoter, enhancer, and silencer regions, but few data are available on the sequences directing the initiation and regulation of meiosis; certainly parallels can be drawn with similar events in microorganisms, and useful complementation strategies may be devised, but significant differences do exist between yeasts and higher plants suggesting that more appropriate parallels should be drawn with multicellular eukaryotes such as nematodes. The loci involved in epigenetic imprinting and self-incompatibility are important because they affect both male and female developmental pathways. Nothing is known of the regulatory sequences which direct the epigenetic imprinting of the sperm and central cell genomes, but information is becoming available on the promoter regions of the S (incompatibility)-locus. Interestingly, sequences directing expression in male and female tissues are contained within a single 5' stretch within the locus, and these prom oters also induce expression in different cell types in the anther and pistil depending on the type of self-incompatibility involved. Regulation of reproductive development in plants is apparently not very stringent, for there are examples in both male and female germ lines of reversion to an embryonic condition (apomixis and microspore embryogenesis); whether this reflects the highly dedifferentiated state of these cells or differences in the regulation of somatic and reproductive development remains to be determined.


Genome ◽  
1992 ◽  
Vol 35 (3) ◽  
pp. 516-527 ◽  
Author(s):  
Shahryar F. Kianian ◽  
Carlos F. Quiros

Sequences homologous to rRNA, napin, cruciferin, self-incompatibility, isocitrate lyase, and malate synthase were mapped to the Brassica oleracea genome. Four segregating populations were used to disclose possible distortions in segregation and linkage ratios while maximizing detectable polymorphism. rRNA mapped to three unlinked loci, which reside on different chromosomes. Certain restriction fragment length polymorphism variations detected by the rDNA probe reflect changes in the number of intergenic spacer subrepeats, the size of which was estimated to be about 300 base pairs. All five napin, three self-incompatibility, and two isocitrate lyase loci mapped in linkage clusters, while those of cruciferin and malate synthase (two loci each) were independent.Key words: Brassica oleracea, RFLP analysis, linkage analysis, multigene family.


2008 ◽  
Vol 34 (6) ◽  
pp. 934-943
Author(s):  
Qi-Guo GAO ◽  
Ming SONG ◽  
Yi NIU ◽  
Kun YANG ◽  
Li-Quan ZHU ◽  
...  

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