scholarly journals The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry)

GigaScience ◽  
2017 ◽  
Vol 7 (4) ◽  
Author(s):  
Matteo Buti ◽  
Marco Moretto ◽  
Elena Barghini ◽  
Flavia Mascagni ◽  
Lucia Natali ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Fragaria Vesca ◽  
Woodland Strawberry

scholarly journals N6-Methyladenine DNA Modification in the Woodland Strawberry (Fragaria vesca) Genome Reveals a Positive Relationship With Gene Transcription

2020 ◽  
Vol 10 ◽  
Author(s):  
Shang-Qian Xie ◽  
Jian-Feng Xing ◽  
Xiao-Ming Zhang ◽  
Zhao-Yu Liu ◽  
Mei-Wei Luan ◽  
...  
Keyword(s):  
Gene Transcription ◽  
Positive Relationship ◽  
Fragaria Vesca ◽  
Dna Modification ◽  
Woodland Strawberry

scholarly journals The wild strawberry kinome: identification, classification and transcript profiling of protein kinases during development and in response to gray mold infection

BMC Genomics ◽  
2020 ◽  
Vol 21 (1) ◽  
Author(s):  
Hui Liu ◽  
Wei Qu ◽  
Kaikai Zhu ◽  
Zong-Ming Cheng
Keyword(s):  
Protein Kinases ◽  
Evolutionary Dynamics ◽  
Expression Patterns ◽  
Gene Families ◽  
Gray Mold ◽  
Fragaria Vesca ◽  
Woodland Strawberry ◽  
Go Enrichment ◽  
Potential Link ◽  
Wild Strawberry

Abstract Background Protein kinases (PKs) play an important role in signaling cascades and are one of the largest and most conserved protein super families in plants. Despite their importance, the woodland strawberry (Fragaria vesca) kinome and expression patterns of PK genes remain to be characterized. Results Here, we report on the identification and classification of 954 Fragaria vesca PK genes, which were classified into nine groups and 124 gene families. These genes were distributed unevenly among the seven chromosomes, and the number of introns per gene varied from 0 to 47. Almost half of the putative PKs were predicted to localize to the nucleus and 24.6% were predicted to localize to the cell membrane. The expansion of the woodland strawberry PK gene family occurred via different duplication mechanisms and tandem duplicates occurred relatively late as compared to other duplication types. Moreover, we found that tandem and transposed duplicated PK gene pairs had undergone stronger diversifying selection and evolved relatively faster than WGD genes. The GO enrichment and transcriptome analysis implicates the involvement of strawberry PK genes in multiple biological processes and molecular functions in differential tissues, especially in pollens. Finally, 109 PKs, mostly the receptor-like kinases (RLKs), were found transcriptionally responsive to Botrytis cinerea infection. Conclusions The findings of this research expand the understanding of the evolutionary dynamics of PK genes in plant species and provide a potential link between cell signaling pathways and pathogen attack.

scholarly journals Re-annotation of the woodland strawberry (Fragaria vesca) genome

BMC Genomics ◽  
2015 ◽  
Vol 16 (1) ◽  
pp. 29 ◽  
Author(s):  
Omar Darwish ◽  
Rachel Shahan ◽  
Zhongchi Liu ◽  
Janet P Slovin ◽  
Nadim W Alkharouf
Keyword(s):  
Fragaria Vesca ◽  
Woodland Strawberry

scholarly journals Quantitative trait variation is revealed in a novel hypomethylated population of woodland strawberry (Fragaria vesca)

2016 ◽  
Vol 16 (1) ◽  
Author(s):  
Jihua Xu ◽  
Karen K. Tanino ◽  
Kyla N. Horner ◽  
Stephen J. Robinson
Keyword(s):  
Quantitative Trait ◽  
Fragaria Vesca ◽  
Trait Variation ◽  
Woodland Strawberry

scholarly journals The genome of woodland strawberry (Fragaria vesca)

2010 ◽  
Vol 43 (2) ◽  
pp. 109-116 ◽  
Author(s):  
Vladimir Shulaev ◽  
Daniel J Sargent ◽  
Ross N Crowhurst ◽  
Todd C Mockler ◽  
Otto Folkerts ◽  
...  
Keyword(s):  
Fragaria Vesca ◽  
Woodland Strawberry

scholarly journals Chromosome-Scale Genome for a Red-Fruited, Perpetual Flowering and Runnerless Woodland Strawberry (Fragaria vesca)

2021 ◽  
Vol 12 ◽  
Author(s):  
Elizabeth I. Alger ◽  
Adrian E. Platts ◽  
Sontosh K. Deb ◽  
Xi Luo ◽  
Shujun Ou ◽  
...  
Keyword(s):  
Fragaria Vesca ◽  
Woodland Strawberry ◽  
Perpetual Flowering

scholarly journals Genetic variation in herbivore resistance within a strawberry crop wild relative (Fragaria vesca L.)

2019 ◽  
Vol 14 (1) ◽  
pp. 31-40 ◽  
Author(s):  
Daniela Weber ◽  
Paul A. Egan ◽  
Anne Muola ◽  
Johan A. Stenberg
Keyword(s):  
Genetic Variation ◽  
Genetic Resources ◽  
Egg Laying ◽  
Distribution Area ◽  
Fragaria Vesca ◽  
Wild Relative ◽  
Crop Wild Relative ◽  
Continental Scale ◽  
Woodland Strawberry ◽  
Resistance Traits

Abstract To decrease the dependency on chemical pesticides, the resistance of cultivated strawberry to pests needs to be increased. While genetic resources within domesticated varieties are limited, wild genotypes are predicted to show high heritable variation in useful resistance traits. We collected 86 wild accessions of Fragaria vesca L. from central Sweden and screened this germplasm for antibiosis (pest survival and performance) and antixenosis (pest preference) traits active against the strawberry leaf beetle (Galerucella tenella L.). First, extensive common garden experiments were used to study antibiosis traits in the sampled plant genotypes. Heritable genetic variation among plant genotypes was found for several antibiosis traits. Second, controlled cafeteria experiments were used to test for plant genetic variation in antixenosis traits. The leaf beetles avoided egg laying on plant genotypes possessing high antibiosis. This indicates a high degree of concordance between antibiosis and antixenosis and that the beetles’ egg-laying behavior optimizes the fitness of their offspring. The existence of high genetic variation in key resistance traits suggests that wild woodland strawberry contains untapped resources that are sought to reduce pesticide dependence in cultivated strawberry. Given that only a very small portion of the species’ distribution area was sampled, even higher variation may be expected at the continental scale. As a whole, the genetic resources identified in this study serve to strengthen the position of woodland strawberry as a key crop wild relative.

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