PSXII-33 The Effect of Log Transformation on Carcass Data Measured by Ultrasound

Abstract This study is to evaluate the effect of log transformation on ultrasound data records on the genetic evaluation of Hanwoo (Korean native cattle) proven bulls. Three different scenarios were established: genetic evaluations using (A) only yearling weights (YW; n = 15,665) and carcass traits (CT); (B) YW, CT and raw ultrasound data at 12 and 24 months of age; and (C) YW, CT and log transformed data of raw ultrasound data records in (B). Carcass traits include carcass weight (CW; n = 6,526), loin muscle area (LMA; n = 6,820), backfat thickness (BFT; n = 6,723), and intramuscular fat (IMF; n = 5,037). Ultrasound traits include LMA, BFT, and fat content (FC; %), which were measured with Aquila Vet (Pie Medical) between the 12th and 13th rib. REMLF90 was used to estimate genetic parameters such as heritability and genetic correlations. Rank correlations of breeding values were analyzed using SAS 9.2. The heritability of YW was the highest at (B) and reduced by 0.2% at (C). The heritability of CW was higher at (B) and (C) than at (A) by 0.6%. In the case of BFT and IMF, (B) and (C) was 0.5% and 0.6% higher than (A) and -1.0% and -0.8% lower than (A), respectively. The heritabilities regarding ultrasound traits at 12 months of age were higher for LMA and FC in (C) than (B), and higher for BFT in (B) than (C). In the case of 24 months of age, (C) was higher in all ultrasound traits than (B). The rank correlations of (B) and (C) at 12 months were 0.995 in ultrasound LMA and 0.991 in ultrasound BFT. For 24 months, the correlations were 0.989 and 0.986, respectively. In conclusion, the results didn’t provide us with evidence of a significant difference in genetic evaluations among different scenarios regarding log transformation on ultrasound data records of carcass traits.

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Genetic parameters among growth and carcass traits of Canadian Charolais cattle

Canadian Journal of Animal Science ◽

10.4141/a04-019 ◽

2004 ◽

Vol 84 (4) ◽

pp. 589-597 ◽

Cited By ~ 24

Author(s):

D. H. Crews ◽

Jr., M. Lowerison ◽

N. Caron ◽

R. A. Kemp

Keyword(s):

Fixed Effects ◽

Genetic Parameters ◽

Growth Traits ◽

Carcass Traits ◽

Genetic Correlations ◽

Subcutaneous Fat ◽

Field Performance ◽

Pedigree Data ◽

Marbling Score ◽

Muscle Area

Genetic parameters for three growth and five carcass traits were estimated for Charolais using a combination of carcass progeny test, purebred field performance and pedigree data. Heritabilities and genetic and residual correlations were derived from variance components for birth weight (BWT, n = 54 221), 205-d weaning weight (WT205, n = 31 384), postweaning gain (PWG, n = 19 403), hot carcass weight (HCW, n = 6958), average subcutaneous fat thickness (FAT, n = 6866), longissimus muscle area (REA, n = 6863), marbling score (MAR, n = 6903) and estimated carcass lean yield percentage (PLY, n = 6852) with an animal model (n = 78 728) and restricted maximum likelihood. Breed of dam and contemporary group appropriate to each trait were included as fixed effects in the model, whereas random effects included direct genetic for all traits, maternal genetic for BWT and WT205, and maternal permanent environmental for WT205. Carcass traits were adjusted to a constant harvest age of 425 d. Heritability estimates of 0.53, 0.22, and 0.21 were obtained for direct components of BWT, WT205, and PWG, respectively, and maternal heritabilities were 0.16 and 0.10 for BWT and WT205, respectively. Direct × maternal genetic correlations for BWT (-0.49) and WT205 (-0.35) were negative. Heritabilities for HCW, FAT, REA, MAR, and PLY were 0.33, 0.39, 0.43, 0.34, and 0.46, respectively. Genetic correlations among direct effects for growth traits were moderately positive and generally uncorrelated with maternal effects across traits. Lean and fat deposition in the carcass generally had negative, unfavorable genetic correlations, although improvement in lean yield and marbling score may not be strongly antagonistic. Genetic correlations of direct and maternal components of growth traits with carcass traits suggested that selection for increased growth rate would not be antagonistic to improvement in carcass yield or meat quality. Key words: Carcass, Charolais, correlation, genetic parameters, growth

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Estimation of Genetic Parameters and Correlation between Yearling Ultrasound Measurements and Carcass Traits in Hanwoo Cattle

Animals ◽

10.3390/ani11051425 ◽

2021 ◽

Vol 11 (5) ◽

pp. 1425

Author(s):

Masoumeh Naserkheil ◽

Deuk-Hwan Lee ◽

Hong-Sik Kong ◽

Jiyeon Seong ◽

Hossein Mehrban

Keyword(s):

Genetic Correlation ◽

Genetic Parameters ◽

Carcass Traits ◽

Genetic Correlations ◽

Backfat Thickness ◽

Marbling Score ◽

Muscle Area ◽

Eye Muscle ◽

Ultrasound Measurements ◽

Heritability Estimates

Genetic parameters have a significant role in designing a breeding program and are required to evaluate economically important traits. The objective of this study was to estimate heritability and genetic correlation between yearling ultrasound measurements, such as backfat thickness (UBFT), eye muscle area (UEMA), intramuscular fat content (UIMF), and carcass traits, such as backfat thickness (BFT), carcass weight (CW), eye muscle area (EMA), marbling score (MS) at approximately 24 months of age, as well as yearling weight (YW) in Hanwoo bulls (15,796) and steers (5682). The (co) variance components were estimated using a multi-trait animal model. Moderate to high heritability estimates were obtained and were 0.42, 0.50, 0.56, and 0.59 for CW, EMA, BFT, and MS, respectively. Heritability estimates for yearling measurements of YW, UEMA, UBFT, and UIMF were 0.31, 0.32, 0.30, and 0.19, respectively. Favorable and strong genetic correlations were observed between UIMF and MS (0.78), UBFT and BFT (0.63), and UEMA and EMA (0.65). Moreover, the estimated genetic correlation between YW and CW was high (0.84) and relatively moderate between YW and EMA (0.43). These results suggest that genetic improvement can be achieved for carcass traits when using yearling ultrasound measurements as selection criteria in ongoing Hanwoo breeding programs.

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Associations between reproductive and carcass traits in Nellore

Semina Ciências Agrárias ◽

10.5433/1679-0359.2015v36n6supl2p4423 ◽

2015 ◽

Vol 36 (6Supl2) ◽

pp. 4423 ◽

Cited By ~ 1

Author(s):

Edson Junior Heitor de Paula ◽

Elias Nunes Martins ◽

Carlos Antônio Lopes de Oliveira ◽

Cláudio De Ulhoa Magnabosco ◽

Roberto Daniel Sainz ◽

...

Keyword(s):

Genetic Parameters ◽

Random Effect ◽

Carcass Traits ◽

Genetic Correlations ◽

Reproductive Traits ◽

Muscle Area ◽

Scrotal Circumference ◽

Short Period ◽

Fat Thickness ◽

Heritability Estimates

<p>The objective of this study was to estimate the genetic parameters and (co)variance of Nellore animals and to characterize the associations between these characteristics for the following carcass traits: weight (W), longissimus muscle area (LMA), rump fat thickness (RF) and fat thickness between the 12th and 13th ribs obtained by ultrasound (BF); also, the following reproductive traits: age at first calving (AFC), first calving interval (FCI), scrotal circumference at 450 and 550 days of age (SC450 and SC550). The genetic parameters were estimated by a single-trait and two traits animal model using Bayesian inference. The model used for all of the features included the genetic random effect and age as covariate assuming a quadratic effect. Additionally, sex, month and year of birth and management of creation and environmental effects identified were included for the carcass traits. For AFC, FCI and SC450 and SC550, we considered only the month and year of birth. The heritability estimates for all of the traits were higher in the two traits analysis, except for AFC and FCI, which showed 0.75 and 0.29, respectively, similar values in the single trait analysis. The two traits analyses resulted in heritability estimates for a posteriori for the features W, LMA, BF, RF, SC450 and SC550 of 0.49, 0.66, 0.74, 0.68 0.66 and 0.74, respectively, suggesting the possibility of genetic gains during a short period of time. The genetic correlations between AFC and carcass traits measured by ultrasound were close to zero. A similar trend was found for AFC, SC450 and SC550 days, indicating that the selection for these traits does not promote changes in AFC. High genetic correlations (0.92, 0.93 and 0.94) were observed between the characteristics LMA and W, BF and RF, and SC450 and SC550, respectively.</p>

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Associations between reproductive and carcass traits in Nellore

Semina Ciências Agrárias ◽

10.5433/1679-0359.2015v36n6sup2p4423 ◽

2015 ◽

Vol 36 (6Supl2) ◽

pp. 4423

Author(s):

Edson Junior Heitor de Paula ◽

Elias Nunes Martins ◽

Carlos Antônio Lopes de Oliveira ◽

Cláudio De Ulhoa Magnabosco ◽

Roberto Daniel Sainz ◽

...

Keyword(s):

Genetic Parameters ◽

Random Effect ◽

Carcass Traits ◽

Genetic Correlations ◽

Reproductive Traits ◽

Muscle Area ◽

Scrotal Circumference ◽

Short Period ◽

Fat Thickness ◽

Heritability Estimates

The objective of this study was to estimate the genetic parameters and (co)variance of Nellore animals and to characterize the associations between these characteristics for the following carcass traits: weight (W), longissimus muscle area (LMA), rump fat thickness (RF) and fat thickness between the 12th and 13th ribs obtained by ultrasound (BF); also, the following reproductive traits: age at first calving (AFC), first calving interval (FCI), scrotal circumference at 450 and 550 days of age (SC450 and SC550). The genetic parameters were estimated by a single-trait and two traits animal model using Bayesian inference. The model used for all of the features included the genetic random effect and age as covariate assuming a quadratic effect. Additionally, sex, month and year of birth and management of creation and environmental effects identified were included for the carcass traits. For AFC, FCI and SC450 and SC550, we considered only the month and year of birth. The heritability estimates for all of the traits were higher in the two traits analysis, except for AFC and FCI, which showed 0.75 and 0.29, respectively, similar values in the single trait analysis. The two traits analyses resulted in heritability estimates for a posteriori for the features W, LMA, BF, RF, SC450 and SC550 of 0.49, 0.66, 0.74, 0.68 0.66 and 0.74, respectively, suggesting the possibility of genetic gains during a short period of time. The genetic correlations between AFC and carcass traits measured by ultrasound were close to zero. A similar trend was found for AFC, SC450 and SC550 days, indicating that the selection for these traits does not promote changes in AFC. High genetic correlations (0.92, 0.93 and 0.94) were observed between the characteristics LMA and W, BF and RF, and SC450 and SC550, respectively.

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Genetic relationships between live animal scan traits and carcass traits of Australian Angus bulls and heifers

Animal Production Science ◽

10.1071/an12435 ◽

2013 ◽

Vol 53 (10) ◽

pp. 1075

Author(s):

Vinzent Börner ◽

David J. Johnston ◽

Hans-Ulrich Graser

Keyword(s):

Genetic Gain ◽

Genetic Parameters ◽

Genetic Relationships ◽

Carcass Traits ◽

Genetic Correlations ◽

Age Effect ◽

Breeding Value ◽

Muscle Area ◽

Live Animal ◽

Eye Muscle

Genetic parameters of four ultrasound live-scan traits and five carcass traits of Australian Angus cattle were examined with regard to sex and age of the scanned individuals. Live-scans were subdivided according to whether the observation was obtained from a bull or a heifer. In addition, two age subset (‘young’ and ‘old’) within sex were formed by k-means clustering around two centres within sex according to the age at scanning. REML estimates for heritabilities, genetic, residual and phenotypic correlations for each trait and trait combination were derived from a series of uni-, bi- and tri-variate analysis. Statistically significant age effects could be found for heritablities of scan intra-muscular fat content in heifers and scan fat depth at P8 site and scan rib fat depth in bulls, and for genetic correlations between the scan traits fat depth at P8 site, rib fat depth and eye muscle area. However, differences in heritablities between age sets within sex did not exceed 0.05, and genetic correlations between scan traits of ‘young’ and ‘old’ animals were at least 0.9. Differences between genetic correlations of abattoir carcass traits and ‘young’ and ‘old’ live-scan traits, respectively, were not significant due to high standard errors but up to 0.44. The larger of these differences were found for combinations of scan-traits and non-target carcass traits and not for combination of scan-traits and their actual carcass target traits. Thus, although some results suggest an age effect on the genetic parameters of scan traits, the extent of this effect is of limited impact on breeding value accuracy and genetic gain of scan traits. Furthermore, a possible age effect on correlations to economically important carcass traits need to be underpinned by more carcass traits observations in order to get unambiguous results allowing to draw consequences of scanning younger individuals for accuracy of breeding values and genetic gain in carcass traits.

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Genetic parameters of carcass quality in Down cross sheep

Animal Science ◽

10.1017/s0003356100026131 ◽

1968 ◽

Vol 10 (2) ◽

pp. 183-191 ◽

Cited By ~ 5

Author(s):

J. C. Bowman ◽

J. E. Marshall ◽

J. S. Broadbent

Keyword(s):

Genetic Variation ◽

Genetic Parameters ◽

Carcass Traits ◽

Genetic Correlations ◽

Carcass Quality ◽

Correction Factors ◽

Muscle Area ◽

Eye Muscle ◽

Additive Genetic Variation ◽

Commercial Value

This report gives an account of the paternal half-sib analysis of carcass quality, based on commercial joint dissection, on Down cross sheep collected in the four years 1962–65 inclusive. It also includes a discussion of the multiplicative correction factors used, and the phenotypic and genetic correlations between all the traits, estimated from the pooled within-farm, within-year analysis. It shows that there is very little genetic variation for many of the characters but that the percentage leg, percentage best end, age at slaughter and eye-muscle area have much additive genetic variation remaining for worthwhile response to be expected from selection. These three carcass traits are also the most important characters in determining the commercial value and saleability of lamb. From the results obtained it is argued that there is still much genetic variation for fat development in sheep.

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Comparison of two live-animal ultrasound systems for genetic evaluation of carcass traits in Angus cattle

Translational Animal Science ◽

10.1093/tas/txab011 ◽

2021 ◽

Author(s):

C J Duff ◽

J H J van der Werf ◽

P F Parnell ◽

S A Clark

Keyword(s):

Carcass Traits ◽

Genetic Correlations ◽

Subcutaneous Fat ◽

Genetic Evaluation ◽

Ultrasound Scan ◽

Ultrasound Scanning ◽

Eye Muscle ◽

Angus Cattle ◽

Breeding Objective ◽

Two Systems

Abstract The improvement of carcass traits is an important breeding objective in beef cattle breeding programs. The most common way of selecting for improvement in carcass traits is via indirect selection using ultrasound scanning of selection candidates which are submitted to genetic evaluation programs. Two systems used to analyse ultrasound images to predict carcass traits are the Pie Medical Esaote Aquila (PIE) and Central Ultrasound Processing (CUP). This study compared the ability of the two systems to predict carcass traits for genetic evaluation in Australian Angus cattle. Genetic and phenotypic parameters were estimated using data from 1648 Angus steers which were ultrasound scanned twice with both systems, first at feedlot entry and then following 100 days in the feedlot. The traits interpreted from ultrasound scanning included eye muscle area (EMA), rib fat (RIB) rump fat (RUMP) and intramuscular fat (IMF). Abattoir carcass data were collected on all steers following the full feedlot feeding period of 285 days. For all ultrasound scan traits, CUP resulted in higher phenotypic and genetic variances compared to the PIE. For IMF, CUP had higher heritability at feedlot intake (0.51 for CUP compared to 0.37 for PIE) and after 100 days feeding (0.54 for CUP compared to 0.45 PIE). CUP predicted IMF also tended to have stronger correlations with the breeding objective traits of carcass IMF marbling traits, both genetically (ranging from 0.59 to 0.75 for CUP compared to 0.45 to 0.63 for PIE) and phenotypically (ranging from 0.27 to 0.43 for CUP compared to 0.19 to 0.28 for PIE). Ultrasound scan EMA were the only group of traits in which the heritabilities were higher for PIE (0.52 for PIE compared to 0.40 for CUP at feedlot intake and 0.46 for PIE compared to 0.43 for CUP at 100 days of feeding), however with similar relationships to the breeding objective carcass EMA observed. For subcutaneous fat traits of ultrasound RIB and RUMP, the heritabilites and genetic correlations to the related carcass traits were similar, with the exception being the higher heritability observed for CUP predicted RUMP at feedlot intake at 0.52 compared to 0.38 for PIE. The results from this study indicates that the CUP system, compared to PIE, provides an advantage for genetic evaluation of carcass traits in Angus cattle, particularly for the IMF and associated marbling traits.

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Quantitative study of genetic gain for growth, carcass, and morphological traits of Nelore cattle

Canadian Journal of Animal Science ◽

10.1139/cjas-2018-0078 ◽

2019 ◽

Vol 99 (2) ◽

pp. 296-306

Author(s):

Daniel Duarte da Silveira ◽

Lucas De Vargas ◽

Rodrigo Junqueira Pereira ◽

Gabriel Soares Campos ◽

Ricardo Zambarda Vaz ◽

...

Keyword(s):

Genetic Variability ◽

Carcass Traits ◽

Genetic Correlations ◽

Correlated Response ◽

Genetic Associations ◽

Muscle Area ◽

Genetic Gains ◽

Fat Thickness ◽

Nelore Cattle ◽

Genetic Trends

The aim of this study was to evaluate the genetic variability, genetic and phenotypic associations, and genetic gains of birth (BW), weaning (WW), and yearling (YW) weights, loin muscle area (LMA), backfat thickness (BF), rump fat thickness (RF), scores of body structure (BS), finishing precocity (FS), and muscling (MS) in Nelore cattle. Genetic parameters were obtained through Bayesian inference using BLUPF90 programs. All studied traits showed genetic variability, with heritability ranging from 0.29 to 0.47. In all studied ages, weights presented positive genetic correlations with LMA (ranging from 0.13 to 0.53), being generally stronger in comparison with the other carcass traits analyzed (BF and RF). Similarly, weights were higher genetic associated with BS (0.47–0.92) than with FS (0.18–0.62) and MS (0.22–0.65), respectively. The BF and RF showed positive and moderate genetic associations with FS and MS (0.31–0.36). Genetic trends were significant (P < 0.05) and favorable for WW, YW, and visual scores. Selection for increasing BW, WW, YW, and LMA will result in modest or no change in BF and RF (correlated response ranging from −0.04 to 0.07 mm per generation). In this population, carcass traits must be included in the selection indexes to obtain genetic gains in carcass quality, if desired.

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Estimation of environmental effects and genetic parameters of carcass traits on Chikso (Korean brindle cattle)

Asian-Australasian Journal of Animal Sciences ◽

10.5713/ajas.19.0136 ◽

2020 ◽

Vol 33 (4) ◽

pp. 525-530 ◽

Cited By ~ 1

Author(s):

Byoungho Park ◽

Tae Jeong Choi ◽

Mi Na Park ◽

Sang-Hyon Oh

Keyword(s):

Linear Model ◽

Environmental Effects ◽

Genetic Parameters ◽

Coat Color ◽

Carcass Traits ◽

National Level ◽

Pedigree Information ◽

Small Scale ◽

Muscle Area ◽

Eye Muscle

Objective: The purpose of this study was i) to identify the characteristics of carcass traits in Chikso by gender, region, age at slaughter, and coat color using the carcass data collected from the nationwide pedigree information and coat color investigation, and ii) to estimate genetic parameters for breed improvement.Methods: A linear model was used to analyze the environmental effects on the carcass traits and to estimate genetic parameters. Analysis of variance was performed using TYPE III sum of squares for the unbalanced data provided by the general linear model procedure. Variance components for genetic parameters was estimated using REMLF90 of the BLUPF90 family programs.Results: Phenotypic performance of carcass weight (CW), eye muscle area (EMA), and backfat thickness (BF) in Chikso were lower than those of Hanwoo. This is a natural outcome because Hanwoo have undergone significant efforts for improvement at the national level, a phenomenon not observed in Chikso. Another factor influencing the above outcome was the smaller population size of Chikso compared to that of Hanwoo’s. The heritabilities of CW, EMA, BF, and marbling score in Chikso were estimated as 0.50, 0.37, 0.35, and 0.53, respectively, which were was higher than those of Hanwoo.Conclusion: Based on the genetic parameters that were estimated in this study, it is expected that the carcass traits will improve when the livestock research institutes at each province conduct small-scale performance tests and the semen is provided to farmers after selecting proven bulls using the state-of-art selection technique such as genomic selection.

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Genetic Evaluation of Reproductive and Metabolic Disorders and Displaced Abomasum in Czech Holstein Cows

Acta Universitatis Agriculturae et Silviculturae Mendelianae Brunensis ◽

10.11118/actaun201967040939 ◽

2019 ◽

Vol 67 (4) ◽

pp. 939-946

Author(s):

Eva Kašná ◽

Petr Fleischer ◽

Ludmila Zavadilová ◽

Soňa Šlosárková

Keyword(s):

Metabolic Disorders ◽

Genetic Parameters ◽

Genetic Correlations ◽

Health Data ◽

Genetic Evaluation ◽

Holstein Cows ◽

Retained Placenta ◽

Cystic Ovary ◽

On Line ◽

Parturient Paresis

We estimated the genetic parameters of the most frequent reproductive and metabolic disorders as recorded on‑line by 55 milk producers in Czech Holstein cows in the Diary of Diseases and Treatments. The dataset covered the period from July 2015 to May 2019. The coefficients of heritability were estimated for retained placenta (h2 = 0.01), metritis (h2 = 0.04), endometritis (h2 = 0.03), cystic ovary disease (h2 = 0.03), parturient paresis (h2 = 0.01), ketosis (h2 = 0.01) and displaced abomasum (h2 = 0.03). Positive genetic correlations different from 0 were estimated between parturient paresis and displaced abomasum (rg1g2 = 0.75), retained placenta and metritis (rg1g2 = 0.61), displaced abomasum and endometritis (rg1g22 = 0.49), metritis and endometritis (rg1g2 = 0.45), and metritis and displaced abomasum (rg1g2 = 0.41). Because each farmer recorded a slightly different portfolio of health data, the genetic correlations with metabolic disorders couldn’t be estimated in most cases, since the number of observations was not sufficient.

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