The future of research with carnivorous plants

2018 ◽  
Author(s):  
Aaron M. Ellison ◽  
Lubomír Adamec
Keyword(s):  
Natural Selection ◽  
Population Biology ◽  
Field Experiments ◽  
Evolutionary Dynamics ◽  
Species Concept ◽  
Intraspecific Variability ◽  
Carnivorous Plants ◽  
Assisted Migration ◽  
Transcriptomic Data ◽  
Phylogenetic Framework

The material presented in the chapters of Carnivorous Plants: Physiology, Ecology, and Evolution together provide a suite of common themes that could provide a framework for increasing progress in understanding carnivorous plants. All speciose genera would benefit from more robust, intra-generic classifications in a phylogenetic framework that uses a unified species concept. As more genomic, proteomic, and transcriptomic data accrue, new insights will emerge regarding trap biochemistry and regulation; interactions with commensals; and the importance of intraspecific variability on which natural selection works. Continued elaboration of field experiments will provide new insights into basic physiology; population biology; plant-animal and plant-microbe relationships; and evolutionary dynamics, all of which will aid conservation efforts and contribute to discussions of assisted migration as the climate continues to change.

scholarly journals A Study of the Coevolution of Digital Organisms with an Evolutionary Cellular Automaton

Biology ◽  
2021 ◽  
Vol 10 (11) ◽  
pp. 1147
Author(s):  
Javier Falgueras-Cano ◽  
Juan-Antonio Falgueras-Cano ◽  
Andrés Moya
Keyword(s):  
Natural Selection ◽  
Cellular Automaton ◽  
Evolutionary Dynamics ◽  
Evolutionary Strategy ◽  
Phenotypic Flexibility ◽  
Biological Interactions ◽  
Fragmented Habitats ◽  
Digital Organisms ◽  
Effective Instrument ◽  
Good Resource

This paper presents an Evolutionary Cellular Automaton (ECA) that simulates the evolutionary dynamics of biological interactions by manipulating strategies of dispersion and associations between digital organisms. The parameterization of the different types of interaction and distribution strategies using configuration files generates easily interpretable results. In that respect, ECA is an effective instrument for measuring the effects of relative adaptive advantages and a good resource for studying natural selection. Although ECA works effectively in obtaining the expected results from most well-known biological interactions, some unexpected effects were observed. For example, organisms uniformly distributed in fragmented habitats do not favor eusociality, and mutualism evolved from parasitism simply by varying phenotypic flexibility. Finally, we have verified that natural selection represents a cost for the emergence of sex by destabilizing the stable evolutionary strategy of the 1:1 sex ratio after generating randomly different distributions in each generation.

scholarly journals Landscapes of fear: from trophic cascades to applied management and population ecology

2017 ◽  
Author(s):  
Sonny S Bleicher
Keyword(s):  
Population Biology ◽  
Evolutionary Dynamics ◽  
Focal Point ◽  
Work Group ◽  
Stress Hormones ◽  
Physical Space ◽  
Community Context ◽  
Continuous Measure ◽  
Evolutionary Context ◽  
Study Population

Predator-Prey dynamics, and their trophic impacts, have functioned as a focal point in both community and population biology for five decades. The work-group focusing on these dynamics has however largely changed the focus of their work from trophic effects to the study of non-consumptive effects of predation-- the “ecology of fear”. An increasing number of studies chose to spatially chart wildlife populations’ risk assessment and of those the majority use optimal patch-use (giving-up densities) as a continuous measure of fear. These charts, “landscapes-of-fear” (LOFs) originated in conservation literature and the reintroduction of wolves to Yellowstone. Today, they are used to study population habitat selection and venture into the evolutionary context with studies examining the mechanisms by which species coexist in the same physical space. This review predicts increase in, and encourages the use of, LOFs: as a conservation tool to assess species land-use; as a bridge between ecology and neurology with stress hormones as indicators fear; and as a tool to compare species’ evolutionary dynamics within a community context.

scholarly journals Evolution of correlated complexity in the radically different courtship signals of birds-of-paradise

2018 ◽  
Author(s):  
Russell A. Ligon ◽  
Christopher D. Diaz ◽  
Janelle L. Morano ◽  
Jolyon Troscianko ◽  
Martin Stevens ◽  
...  
Keyword(s):  
Sexual Selection ◽  
Natural Selection ◽  
Evolutionary Biology ◽  
Evolutionary Dynamics ◽  
Functional Integration ◽  
Empirical Support ◽  
Evolutionary Patterns ◽  
Evolutionary Innovation ◽  
Birds Of Paradise ◽  
Analytical Approaches

Ornaments used in courtship often vary wildly among species, reflecting the evolutionary interplay between mate preference functions and the constraints imposed by natural selection. Consequently, understanding the evolutionary dynamics responsible for ornament diversification has been a longstanding challenge in evolutionary biology. However, comparing radically different ornaments across species, as well as different classes of ornaments within species, is a profound challenge to understanding diversification of sexual signals. Using novel methods and a unique natural history dataset, we explore evolutionary patterns of ornament evolution in a group - the birds-of-paradise - exhibiting dramatic phenotypic diversification widely assumed to be driven by sexual selection. Rather than the tradeoff between ornament types originally envisioned by Darwin and Wallace, we found positive correlations among cross-modal (visual/acoustic) signals indicating functional integration of ornamental traits into a composite unit - the courtship phenotype. Furthermore, given the broad theoretical and empirical support for the idea that systemic robustness - functional overlap and interdependency - promotes evolutionary innovation, we posit that birds-of-paradise have radiated extensively through ornamental phenotype space as a consequence of the robustness in the courtship phenotype that we document at a phylogenetic scale. We suggest that the degree of robustness in courtship phenotypes among taxa can provide new insights into the relative influence of sexual and natural selection on phenotypic radiations.Author SummaryAnimals frequently vary widely in ornamentation, even among closely related species. Understanding the patterns that underlie this variation is a significant challenge, requiring comparisons among drastically different traits - like comparing apples to oranges. Here, we use novel analytical approaches to quantify variation in ornamental diversity and richness across the wildly divergent birds-of-paradise, a textbook example of how sexual selection can profoundly shape organismal phenotypes. We find that color and acoustic complexity, along with behavior and acoustic complexity, are positively correlated across evolutionary time-scales. Positive covariation among ornament classes suggests that selection is acting on correlated suites of traits - a composite courtship phenotype - and that this integration may be partially responsible for the extreme variation we see in birds-of-paradise.

scholarly journals The population and evolutionary dynamics of bacteriophage: Why be temperate revisited

2019 ◽  
Author(s):  
Waqas Chaudhry ◽  
Nicole Vega ◽  
Adithi Govindan ◽  
Rodrigo Garcia ◽  
Esther Lee ◽  
...  
Keyword(s):  
Natural Selection ◽  
Evolutionary Dynamics ◽  
Natural Populations ◽  
Lytic Phage ◽  
Temperate Bacteriophage ◽  
Serial Transfer ◽  
Virulent Phage ◽  
E Coli ◽  
Resistant Refractory

AbstractBacteriophages are deemed either lytic (virulent) or temperate, respectively depending on whether their genomes are transmitted solely horizontally, or both horizontally and vertically. To elucidate the ecological and evolutionary conditions under which natural selection will favor the evolution and maintenance of lytic or temperate modes of phage replication and transmission, we use a comprehensive mathematical model of the dynamics of temperate and virulent phage in populations of bacteria sensitive and resistant to these viruses. For our numerical analysis of the properties of this model, we use parameters estimated with the temperate bacteriophage Lambda, λ, it’s clear and virulent mutants, andE. colisensitive and resistant - refractory to these phages. Using batch and serial transfer population dynamic and reconstruction experiments, we test the hypotheses generated from this theoretical analysis. Based on the results of this jointly theoretical and experimental study, we postulate the conditions under which natural selection will favor the evolution and maintenance of lytic and temperate modes of phage replication and transmission. A compelling and novel prediction thisin silico,in vitro, andin plasticostudy makes is lysogenic bacteria from natural populations will be resistant-refractory to the phage for which they are lysogenic as well as lytic phage sharing the same receptors as these temperate viruses.

scholarly journals Ecological and evolutionary dynamics of interconnectedness and modularity

2018 ◽  
Vol 115 (4) ◽  
pp. 750-755 ◽  
Author(s):  
Jan M. Nordbotten ◽  
Simon A. Levin ◽  
Eörs Szathmáry ◽  
Nils C. Stenseth
Keyword(s):  
Population Dynamics ◽  
Natural Selection ◽  
Evolution Equation ◽  
Evolutionary Dynamics ◽  
Population Distribution ◽  
Theoretical Framework ◽  
Ecological System ◽  
Macro Level ◽  
Population Distributions ◽  
Trait Space

In this contribution, we develop a theoretical framework for linking microprocesses (i.e., population dynamics and evolution through natural selection) with macrophenomena (such as interconnectedness and modularity within an ecological system). This is achieved by developing a measure of interconnectedness for population distributions defined on a trait space (generalizing the notion of modularity on graphs), in combination with an evolution equation for the population distribution. With this contribution, we provide a platform for understanding under what environmental, ecological, and evolutionary conditions ecosystems evolve toward being more or less modular. A major contribution of this work is that we are able to decompose the overall driver of changes at the macro level (such as interconnectedness) into three components: (i) ecologically driven change, (ii) evolutionarily driven change, and (iii) environmentally driven change.

scholarly journals Phenotype bias determines how RNA structures occupy the morphospace of all possible shapes

2020 ◽  
Author(s):  
Kamaludin Dingle ◽  
Fatme Ghaddar ◽  
Petr Šulc ◽  
Ard A. Louis
Keyword(s):  
Natural Selection ◽  
Rna Secondary Structure ◽  
Evolutionary Biology ◽  
Evolutionary Dynamics ◽  
Coarse Grained ◽  
Rna Structures ◽  
Non Coding Rna ◽  
Ultimate Cause ◽  
Uniform Random Sampling ◽  
Bias Versus

The relative prominence of developmental bias versus natural selection is a long standing controversy in evolutionary biology. Here we demonstrate quantitatively that developmental bias is the primary explanation for the occupation of the morphospace of RNA secondary structure (SS) shapes. By using the RNAshapes method to define coarse-grained SS classes, we can directly measure the frequencies that non-coding RNA SS shapes appear in nature. Our main findings are, firstly, that only the most frequent structures appear in nature: The vast majority of possible structures in the morphospace have not yet been explored. Secondly, and perhaps more surprisingly, these frequencies are accurately predicted by the likelihood that structures appear upon uniform random sampling of sequences. The ultimate cause of these patterns is not natural selection, but rather strong phenotype bias in the RNA genotype-phenotype (GP) map, a type of developmental bias that tightly constrains evolutionary dynamics to only act within a reduced subset of structures which are easy to “find”.

scholarly journals A phylogenetic framework for reassessing generic concepts and species delimitation in the lichenized family Trypetheliaceae (Ascomycota: Dothideomycetes)

2016 ◽  
Vol 48 (6) ◽  
pp. 739-762 ◽  
Author(s):  
Robert LÜCKING ◽  
Matthew P. NELSEN ◽  
André APTROOT ◽  
Roselvira BARILLAS DE KLEE ◽  
Paulina A. BAWINGAN ◽  
...  
Keyword(s):  
Species Delimitation ◽  
Type Species ◽  
Species Concept ◽  
Species Concepts ◽  
Additional Species ◽  
Secondary Chemistry ◽  
The Family ◽  
Phylogenetic Framework ◽  
Phenotypic Features

AbstractWe provide an expanded and updated, 2-locus phylogeny (mtSSU, nuLSU) of the lichenized fungal family Trypetheliaceae, with a total of 196 ingroup OTUs, in order to further refine generic delimitations and species concepts in this family. As a result, the following 15 clades are recognized as separate genera, including five newly established genera: Aptrootia, Architrypethelium, Astrothelium (including the bulk of corticate species with astrothelioid ascospores; synonyms: Campylothelium, Cryptothelium, Laurera), Bathelium s. str. (excluding B. degenerans and relatives which fall into Astrothelium), the reinstated Bogoriella (for tropical, lichenized species previously placed in Mycomicrothelia), Constrictolumina gen. nov. (for tropical, lichenized species of Arthopyrenia), Dictyomeridium gen. nov. (for a subgroup of species with muriform ascospores previously placed in Polymeridium), Julella (provisionally, as the type species remains unsequenced), Marcelaria (Laurera purpurina complex), Nigrovothelium gen. nov. (for the Trypethelium tropicum group), Novomicrothelia gen. nov. (for an additional species previously placed in Mycomicrothelia), Polymeridium s. str., Pseudopyrenula, Trypethelium s. str. (T. eluteriae group), and Viridothelium gen. nov. (for the Trypethelium virens group). All recognized genera are phenotypically characterized and a discussion on the evolution of phenotypic features in the family is given. Based on the obtained phylogeny, species delimitations are revised and the importance of characters such as thallus morphology, hymenial inspersion, and secondary chemistry for taxonomic purposes is discussed, resulting in a refined species concept.

scholarly journals Ecological and evolutionary consequences of viral plasticity

2018 ◽  
Author(s):  
Melinda Choua ◽  
Juan A. Bonachela
Keyword(s):  
Field Experiments ◽  
Evolutionary Dynamics ◽  
Physiological State ◽  
Lytic Phage ◽  
Offspring Number ◽  
Host Growth ◽  
Short And Long Term ◽  
Evolutionary Consequences ◽  
Plastic Responses

AbstractViruses can infect any organism. Because viruses use the host machinery to replicate, their performance depends on the host physiological state. For bacteriophages, this host-viral performance link has been characterized empirically and with intracellular theories. Such theories are too detailed to be included in models that study host-phage interactions in the long term, which hinders our understanding of systems that range from pathogens infecting gut bacteria to marine phage shaping present and future oceans. Here, we combined data and models to study the short- and long-term consequences that host physiology has on bacteriophage performance. We compiled data showing the dependence of lytic-phage traits on host growth rate (viral phenotypic “plasticity”) to deduce simple expressions representing such plasticity. We included these expressions in a standard host-phage model, to understand how viral plasticity can break the expected evolutionary trade-off between infection time and viral offspring number. Furthermore, viral plasticity influences dramatically dynamic scenarios (e.g. sudden nutrient pulses or host starvation). We show that the effect of plasticity on offspring number, not generation time, drives the phage ecological and evolutionary dynamics. Standard models do not account for this plasticity, which handicaps their predictability in realistic environments. Our results highlight the importance of viral plasticity to unravel host-phage interactions, and the need of laboratory and field experiments to characterize viral plastic responses across systems.

scholarly journals Escalation and constraints of antagonistic armaments in water striders

2018 ◽  
Author(s):  
Antonin Jean Johan Crumière ◽  
David Armisén ◽  
Aïdamalia Vargas-Lowman ◽  
Martha Kubarakos ◽  
Felipe Ferraz Figueiredo Moreira ◽  
...  
Keyword(s):  
Natural Selection ◽  
Sexual Conflict ◽  
Natural Variation ◽  
Evolutionary Dynamics ◽  
Arms Race ◽  
Trade Off ◽  
Antagonistic Coevolution ◽  
Water Striders ◽  
Mating Performance ◽  
Sexually Antagonistic Coevolution

AbstractSexual conflict may result in the escalating coevolution of sexually antagonistic traits. However, our understanding of the evolutionary dynamics of antagonistic traits and their role in association with sex-specific escalation remains limited. Here we study sexually antagonistic coevolution in a genus of water striders called Rhagovelia. We identified a set of male grasping traits and female anti-grasping traits used during pre-mating struggles and show that natural variation of these traits is associated with variation in mating performance in the direction expected for antagonistic co-evolution. Phylogenetic mapping detected signals of escalation of these sexually antagonistic traits suggesting an ongoing arms race. Moreover, their escalation appears to be constrained by a trade-off with dispersal through flight in both sexes. Altogether our results highlight how sexual interactions may have shaped sex-specific antagonistic traits and how constraints imposed by natural selection may have influenced their evolution.

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