Detection of Tomato Ringspot Virus by Polymerase Chain Reaction

Plant Disease ◽  
1995 ◽  
Vol 79 (10) ◽  
pp. 1054 ◽  
Author(s):  
John A. Griesbach
1996 ◽  
Vol 102 (7) ◽  
pp. 681-685 ◽  
Author(s):  
S. Spiegel ◽  
S. W. Scott ◽  
V. Bowman-Vance ◽  
Y. Tam ◽  
N. N. Galiakparov ◽  
...  

2014 ◽  
Vol 50 (No. 4) ◽  
pp. 174-178
Author(s):  
J. Špak ◽  
D. Pavingerová ◽  
J. Přibylová ◽  
V. Špaková ◽  
F. Paprštein ◽  
...  

In order to find an effective elimination method of Blueberry red ringspot virus (BRRV), shoot tips of 2–3 mm size originating from buds of highbush blueberry cv. Darrow naturally infected by BRRV and collected in winter months were regenerated and multiplied on woody-plant medium (WPM) with 1.5 mg/l zeatin and 20 g/l sucrose. Developed shoots tested negative by polymerase chain reaction (PCR) for BRRV were transferred onto a rooting medium consisting of WPM supplemented with 1 mg/l indole-3-butyric acid. Rooting plants were transferred into soil and tested twice by PCR 6 months apart. Ninety per cent eradication of BRRV was achieved while isolating shoot tips, multiplying them in one vegetative generation, and regenerating whole 50–60 cm high plants within 30 months. All plants developed rich fruits after their overwintering in a cold greenhouse and were tested BRRV negative in summer 2013.  


2006 ◽  
Vol 96 (6) ◽  
pp. 622-629 ◽  
Author(s):  
Varvara I. Maliogka ◽  
Chrisostomos I. Dovas ◽  
Dietrich E. Lesemann ◽  
Stephan Winter ◽  
Nikolaos I. Katis

An isometric virus ca. 25 nm in diameter with angular contour was isolated from onion plants showing yellow leaf striping and necrotic tips. The virus was mechanically transmitted onto 28 species of indicator plants belonging to five families, viz. Amaranthaceae, Chenopodiaceae, Cucurbitaceae, Leguminosae, and Solanaceae where it causes ring spots, malformations, and/or tip necrosis. Cytopathological studies in infected Nicotiana benthamiana tissues revealed cytoplasmic inclusions resembling those caused by Artichoke yellow ringspot virus (AYRSV), a member of the family Comoviridae. Host range and symptomatology of the onion virus were also similar to AYRSV. A high seed transmission rate (20%) was found in onion. Reverse transcription-polymerase chain reaction using degenerate primers specific for the family Comoviridae allowed amplification of RNA-dependent RNA polymerase sequences, which upon sequence analysis and comparison with AYRSV isolates from Cynara scolymus (AYRSV-AtG) and Vicia faba (AYRSV-F) were highly similar, thus providing evidence that the nepovirus AYRSV is infecting onion in the field.


HortScience ◽  
2005 ◽  
Vol 40 (3) ◽  
pp. 874e-875 ◽  
Author(s):  
Mark M. Bray ◽  
John R. Clark ◽  
Rose Gergerich

In 2004, two surveys were conducted to assess the presence of four viruses in marketable blackberry nursery stock. The U.S. survey consisted of dormant nursery stock received from 11 nurseries in the southern, southeastern, midwestern, northeastern, and Pacific northwestern regions of the U.S. The second survey was focused only on Arkansas licensed propagating nurseries with samples collected during the growing season. Samples were tested using reverse transcription–polymerase chain reaction or enzyme-linked immunosorbent assay for the presence of Blackberry yellow vein associated virus (BYVaV), Raspberry bushy dwarf virus (RBDV), Tomato ringspot virus (ToRSV), and Tobacco ringspot virus (TRSV). Of the total samples in the U.S. survey, there were 9% that tested positive for virus infection. Ninety percent of the positives were infected with BYVaV. Forty percent of these were detected in `Triple Crown', 40% in `Chickasaw', and 20% in `Apache'. The remaining 9% of the total positive virus samples were infected with TRSV and 100% of these were in `Triple Crown'. No viruses were found on any samples of `Chester Thornless'. In the Arkansas survey, 11% of the total samples tested positive for virus. Of these, 50% were infected with BYVaV. The percent infected with BYVaV was distributed evenly among `Apache', `Chickasaw', and `Kiowa'. The other 50% of the infected samples were positive for TRSV (67% `Apache', 33% `Chickasaw'). There was one mixed infection of BYVaV and TRSV detected in `Apache'. These findings indicate that BYVaV is the most prevalent virus found in nursery stock and that the occurrence of BYVaV is not restricted to a single region or cultivar.


Author(s):  
G. W. Hacker ◽  
I. Zehbe ◽  
J. Hainfeld ◽  
A.-H. Graf ◽  
C. Hauser-Kronberger ◽  
...  

In situ hybridization (ISH) with biotin-labeled probes is increasingly used in histology, histopathology and molecular biology, to detect genetic nucleic acid sequences of interest, such as viruses, genetic alterations and peptide-/protein-encoding messenger RNA (mRNA). In situ polymerase chain reaction (PCR) (PCR in situ hybridization = PISH) and the new in situ self-sustained sequence replication-based amplification (3SR) method even allow the detection of single copies of DNA or RNA in cytological and histological material. However, there is a number of considerable problems with the in situ PCR methods available today: False positives due to mis-priming of DNA breakdown products contained in several types of cells causing non-specific incorporation of label in direct methods, and re-diffusion artefacts of amplicons into previously negative cells have been observed. To avoid these problems, super-sensitive ISH procedures can be used, and it is well known that the sensitivity and outcome of these methods partially depend on the detection system used.


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