Evaluation of Soybean Germplasm for Resistance to Soybean Rust (Phakopsora pachyrhizi) in Nigeria

Soybean rust, caused by Phakopsora pachyrhizi, is one of the most important constraints to soybean production worldwide. The absence of high levels of host resistance to the pathogen has necessitated the continued search and identification of sources of resistance. In one set of experiments, 178 soybean breeding lines from the International Institute of Tropical Agriculture were rated for rust severity in the field in 2002 and 2003 at Ile-Ife, Yandev, and Ibadan, Nigeria. Thirty-six lines with disease severity ≤3 (based on a 0-to-5 scale) were selected for a second round of evaluation in 2004 at Ibadan. In the third round of evaluation under inoculated field conditions, 11 breeding lines with disease severity ≤2 were further evaluated for rust resistance at Ibadan in 2005 and 2006. The breeding lines TGx 1835-10E, TGx 1895-50F, and TGx 1903-3F consistently had the lowest level of disease severity across years and locations. In another set of experiments, 101 accessions from the United States Department of Agriculture–Agricultural Research Service and National Agriculture Research Organization (Uganda) were evaluated in the first round in 2005 under inoculated conditions in the screenhouse; 12 accessions with disease severity ≤20% leaf area infected were selected for evaluation in the second round in 2005 and 2006 under inoculated field conditions at Ibadan. Highly significant differences (P < 0.0001) in disease severity were observed among the 101 accessions during this first round of rust evaluation. Significant (P < 0.0001) differences in rust severity and sporulation also were observed among the 12 selected accessions. Accessions PI 594538A, PI 417089A, and UG-5 had significantly (P < 0.05) lower disease severity than all other selected accessions in both years of evaluation, with rust severities ranging from 0.1 to 2.4%. These results indicate that some of the breeding lines (TGx 1835-10E, TGx 1895-50F, and TGx 1903-3F) and accessions (PI 594538A, PI 417089A, and UG-5) would be useful sources of soybean rust resistance genes for incorporation into high-yielding and adapted cultivars.

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Comparison of Pathogenic Variation among Phakopsora pachyrhizi Isolates Collected from the United States and International Locations, and Identification of Soybean Genotypes Resistant to the U.S. Isolates

Plant Disease ◽

10.1094/pdis-09-14-0989-re ◽

2015 ◽

Vol 99 (8) ◽

pp. 1059-1069 ◽

Cited By ~ 13

Author(s):

C. Paul ◽

R. D. Frederick ◽

C. B. Hill ◽

G. L. Hartman ◽

D. R. Walker

Keyword(s):

Principal Component ◽

The United States ◽

Soybean Rust ◽

Phakopsora Pachyrhizi ◽

Pathogenic Variation ◽

Virulence Pattern ◽

Soybean Genotypes ◽

Rust Severity ◽

Two Measures ◽

The U.S

A major constraint in breeding for resistance to soybean rust has been the virulence diversity in Phakopsora pachyrhizi populations. In greenhouse experiments, reactions of 18 soybean genotypes to 24 U.S. isolates from 2007 and 2008 and 4 foreign isolates were compared. Reactions of four differentials (Rpp1 to Rpp4) to these U.S. isolates were also compared with reactions to nine foreign isolates and three U.S. isolates from 2004. Principal component analysis (PCA) of the reaction types grouped the U.S. isolates into a single virulence group, whereas each of the foreign isolates had a unique virulence pattern. In another experiment, reactions of 11 differentials to the 24 U.S. isolates were compared and significant interactions (P < 0.001) were found between the isolates and host genotypes for rust severity and uredinia densities. PCA of these two measures of disease placed the 24 isolates into seven or six aggressiveness groups, respectively. In a third experiment, evaluation of 20 soybean genotypes for resistance to the previously established aggressive groups identified 10 genotypes resistant to isolates representing most of the groups. This study confirmed the pathogenic diversity in P. pachyrhizi populations and identified soybean germplasm with resistance to representative U.S. isolates that can be used in breeding.

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From Select Agent to an Established Pathogen: The Response to Phakopsora pachyrhizi (Soybean Rust) in North America

Phytopathology ◽

10.1094/phyto-02-15-0054-fi ◽

2015 ◽

Vol 105 (7) ◽

pp. 905-916 ◽

Cited By ~ 26

Author(s):

Heather Y. Kelly ◽

Nicholas S. Dufault ◽

David R. Walker ◽

Scott A. Isard ◽

Raymond W. Schneider ◽

...

Keyword(s):

United States ◽

South America ◽

Temporal Distribution ◽

The United States ◽

Soybean Rust ◽

United States Department ◽

Phakopsora Pachyrhizi ◽

Eastern Hemisphere ◽

Agriculture Industry ◽

Dreaded Disease

The pathogen causing soybean rust, Phakopsora pachyrhizi, was first described in Japan in 1902. The disease was important in the Eastern Hemisphere for many decades before the fungus was reported in Hawaii in 1994, which was followed by reports from countries in Africa and South America. In 2004, P. pachyrhizi was confirmed in Louisiana, making it the first report in the continental United States. Based on yield losses from countries in Asia, Africa, and South America, it was clear that this pathogen could have a major economic impact on the yield of 30 million ha of soybean in the United States. The response by agencies within the United States Department of Agriculture, industry, soybean check-off boards, and universities was immediate and complex. The impacts of some of these activities are detailed in this review. The net result has been that the once dreaded disease, which caused substantial losses in other parts of the world, is now better understood and effectively managed in the United States. The disease continues to be monitored yearly for changes in spatial and temporal distribution so that soybean growers can continue to benefit by knowing where soybean rust is occurring during the growing season.

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Pathogenic Variation of Phakopsora pachyrhizi Infecting Soybean in Nigeria

Phytopathology ◽

10.1094/phyto-99-4-0353 ◽

2009 ◽

Vol 99 (4) ◽

pp. 353-361 ◽

Cited By ~ 27

Author(s):

M. Twizeyimana ◽

P. S. Ojiambo ◽

K. Sonder ◽

T. Ikotun ◽

G. L. Hartman ◽

...

Keyword(s):

Disease Severity ◽

Leaf Tissue ◽

Principal Component ◽

Exponential Model ◽

Soybean Rust ◽

Phakopsora Pachyrhizi ◽

Guinea Savanna ◽

Pathogenic Variation ◽

Rust Severity ◽

Soybean Leaves

Soybean rust, caused by Phakopsora pachyrhizi, is an important disease in Nigeria and many other soybean-producing countries worldwide. To determine the geographical distribution of soybean rust in Nigeria, soybean fields were surveyed in the Derived Savanna (DS), Northern Guinea Savanna (NGS), and Southern Guinea Savanna (SGS) agroecological zones in Nigeria between 2004 and 2006. Disease severity in each zone was determined and analyzed using geostatistics. Prevalence of infected fields and disease severity in surveyed fields were significantly (P < 0.05) different between geographical zones with both variables being higher in the DS zone than in either NGS or SGS zones. Geostatistical analysis indicated that the spatial influence of disease severity at one location on severity at other locations was between 75 and 120 km. An exponential model best described the relationship between semivariance and lag distance when rust severity was high. Spatial interpolation of rust severity showed that locations in the DS zone were more conducive for the rust epidemic compared to areas in the NGS zone. In the 2005 survey, 116 purified isolates were established in culture on detached soybean leaves. To establish the nature of pathogenic variation in P. pachyrhizi, a set of four soybean accessions with Rpp1, Rpp2, Rpp3, and Rpp4 resistance genes, two highly resistant and two highly susceptible genotypes were inoculated with single uredinial isolates. Principal component analysis on the number of uredinia per square centimeter of leaf tissue for 116 isolates indicated that an adequate summary of pathogenic variation was obtained using only four genotypes. Of these four, PI 459025B (with Rpp4 gene) and TG× 1485-1D had the lowest and highest number of uredinia per square centimeter, respectively. Based on cluster analysis of the number of uredinia per square centimeter, seven pathotype clusters were determined. Isolates in cluster III were the most virulent, while those in cluster IV were the least virulent. Shannon's index (H) revealed a more diverse pathogen population in the DS zone (H = 1.21) compared to the rust population in SGS and NGS with H values of 1.08 and 0.91, respectively. This work will be useful in breeding and management of soybean rust by facilitating identification of resistant genotypes and targeting cultivars with specific resistance to match prevailing P. pachyrhizi pathotypes in a given geographical zone.

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Pathogenic Variation of Phakopsora pachyrhizi Isolates on Soybean in the United States from 2006 to 2009

Plant Disease ◽

10.1094/pdis-05-11-0379 ◽

2012 ◽

Vol 96 (1) ◽

pp. 75-81 ◽

Cited By ~ 30

Author(s):

M. Twizeyimana ◽

G. L. Hartman

Keyword(s):

United States ◽

Resistance Genes ◽

The United States ◽

Soybean Rust ◽

Phakopsora Pachyrhizi ◽

Soybean Genotype ◽

Pathogenic Variation ◽

Differential Set ◽

Soybean Genotypes ◽

Soybean Leaves

The introduction of Phakopsora pachyrhizi, the cause of soybean rust, into the United States is a classic case of a pathogen introduction that became established in a new geographical region overwintering on a perennial host (kudzu, Pueraria lobata). The objective of our study was to classify the pathogenic variation of P. pachyrhizi isolates collected in the United States, and to determine the spatial and temporal associations. In total, 72 isolates of P. pachyrhizi collected from infected kudzu and soybean leaves in the United States were purified, then established and increased on detached soybean leaves. These isolates were tested for virulence and aggressiveness on a differential set of soybean genotypes that included six genotypes with known resistance genes (Rpp), one resistant genotype without any known characterized resistance gene, and a susceptible genotype. Three pathotypes were identified among the 72 U.S. P. pachyrhizi isolates based on the virulence of these isolates on the genotypes in the differential set. Six aggressiveness groups were established based on sporulating-uredinia production recorded for each isolate on each soybean genotype. All three pathotypes and all six aggressiveness groups were found in isolates collected from the southern region and from both hosts (kudzu or soybean) in 2008. Shannon's index based on the number of pathotypes indicated that isolates from the South region were more diverse (H = 0.83) compared with the isolates collected in other regions. This study establishes a baseline of pathogenic variation of P. pachyrhizi in the United States that can be further compared with variation reported in other regions of the world and in future studies that monitor P. pachyrhizi virulence in association to deployment of rust resistance genes.

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First Report of Soybean Rust Caused by Phakopsora pachyrhizi on Pachyrhizus erosus in the United States

Plant Disease ◽

10.1094/pdis-07-10-0483 ◽

2011 ◽

Vol 95 (8) ◽

pp. 1034-1034

Author(s):

M. A. Delaney ◽

E. J. Sikora ◽

D. P. Delaney ◽

M. E. Palm ◽

J. Roscoe ◽

...

Keyword(s):

United States ◽

Ribosomal Rna ◽

Agricultural Research ◽

The United States ◽

University Teaching ◽

Soybean Rust ◽

Infected Leaf ◽

Phakopsora Pachyrhizi ◽

First Report ◽

Pachyrhizus Erosus

Soybean rust, caused by the fungus Phakopsora pachyrhizi, was detected on jicama (Pachyrhizus erosus L. Urban) for the first time in the United States in November 2009. The pathogen was observed on leaves of a single, potted jicama plant grown outdoors in a residential area and on leaves of all plants in a 12-m2 demonstration plot located at the Auburn University Teaching Garden in Auburn, AL. Symptoms on the upper leaf surfaces were isolated chlorotic areas near the leaf edges in the lower part of the canopy. The abaxial surface was first observed to exhibit brown lesions and subsequently produced volcano-shaped uredinia. These symptoms are consistent with a rust previously described on jicama in Mexico (1). Representative symptomatic plant tissue was sent to the USDA National Identification Services (Mycology) Laboratory in Beltsville, MD for diagnostic confirmation at both the Urbana, IL lab and the USDA National Plant Germplasm and Biotechnology Laboratory for DNA testing. From an infected leaf, samples of approximately 5 mm2 were excised from a microscopically observed rust lesion and an apparently noninfected area. Total DNA was purified with the FastDNA Spin Kit (MP Biomedicals, Solon, OH) followed by the E.Z.N.A. MicroElute DNA Clean-Up Kit (Omega Bio-tek, Inc, Doraville, GA) per manufacturer's instructions. Detection of P. pachyrhizi and P. meibomiae DNA was achieved by quantitative PCR using the method of Frederick et al. (2) and a DNA standard of previously prepared P. pachyrhizi spores. The observed rust pustule was found to contain P. pachyrhizi DNA in excess of 28,000 genomes, while no P. pachyrhizi DNA was observed from the asymptomatic sample. Both samples were negative for P. meibomiae. The fungal structures present were confirmed to be Phakopsora spp. DNA was extracted from sori aseptically removed from leaves with a Qiagen (Valencia, CA) DNeasy Plant Mini Kit and amplified with primers Ppa1 and NL4. The resulting partial ITS2 and 28S ribosomal RNA sequences were 100% identical to GenBank entry DQ354537 P. pachyrhizi internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence. Sequences from jicama from Alabama were deposited in GenBank. Voucher specimens were deposited in the USDA Agricultural Research Service, National Fungus Collection (BPI). To our knowledge, this is the first report of the disease on jicama in the United States. References: (1) A. Cárcamo Rodriguez et al. Plant Dis. 90:1260, 2006. (2) R. D. Frederick et al. Phytopathology 92:217, 2002.

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Management of stripe rust of barley (Hordeum vulgare L.) using fungicides

Journal of Applied and Natural Science ◽

10.31018/jans.v7i1.583 ◽

2015 ◽

Vol 7 (1) ◽

pp. 170-174

Author(s):

Rakesh Devlash ◽

Naval Kishore ◽

Guru Dev Singh

Keyword(s):

Hordeum Vulgare ◽

Disease Severity ◽

Stripe Rust ◽

Puccinia Striiformis ◽

Field Conditions ◽

Hordeum Vulgare L ◽

Grain Yields ◽

Untreated Check ◽

Rust Severity ◽

Barley Stripe Rust

Under field conditions, various fungicide molecules were validated for their effectiveness on barley (Hordeum vulgare L.) stripe rust Puccinia striiformis f. sp. consecutively for three years under artificial field epiphytotic conditions. Seven fungicides viz., propiconazole 25%EC (tilt @ 0.1%), tebuconazole 25.9% m/m EC (folicur @ 0.1%), triademefon 25%WP (bayleton @ 0.1%), propiconazole 25%EC (tilt @ 0.05%), tebuconazole 25.9% m/m EC (folicur @ 0.05%), triademefon 25%WP (bayleton@ 0.05%), and mancozeb 75%WP (dithane M45 @ 0.2%) with variousconcentrations were tested for their effectiveness in controlling barley stripe rust severity. All fungicide applications resulted in lower disease severity and higher grain yields than untreated check plots. All the fungicides @ 0.1% concentrations reduced disease severity ranging from 87.8% to 95.6% except Mancozeb @ 0.2% (34.4%). Significant higher yield was obtained with Propiconazole @ 0.1% (26.7 q/ha) followed by Tebuconazole @ 0.1% (25.2 q/ha) and Triademefon @ 0.1% (24.5 q/ha). The present study revealed propiconazole as the most effective fungicide for the control of stripe rust of barley under epiphytotic conditions.

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Evaluation of Foliar Diseases for Soybean Entries in the Pan-African Trials in Malawi and Zambia

Plant Disease ◽

10.1094/pdis-12-19-2617-sr ◽

2020 ◽

Vol 104 (8) ◽

pp. 2068-2073

Author(s):

Christabell Nachilima ◽

Godfree Chigeza ◽

Mwila Chibanda ◽

Hapson Mushoriwa ◽

Brian D. Diers ◽

...

Keyword(s):

Disease Severity ◽

The United States ◽

Sub Saharan Africa ◽

Brown Spot ◽

Soybean Rust ◽

Growth Stages ◽

Foliar Diseases ◽

Pan African ◽

Private And Public ◽

Sub Saharan

Soybean production has expanded worldwide including countries in sub-Saharan Africa. Several national and international agencies and research groups have partnered to improve overall performance of soybean breeding stocks and have introduced new germplasm from Brazil and the United States with the goal of developing new high-yielding cultivars. Part of this effort has been to test improved soybean lines/cultivars accumulated from private and public sources in multilocational trials in sub-Saharan Africa. These trials are known as the Pan-African Soybean Variety Trials, and the entries come from both private and public breeding programs. The objective of this research was to evaluate entries in the trials that include commercial cultivars or advanced experimental lines for the incidence and severity of foliar diseases. All trials were planted in December 2018 with six located in Zambia and one in Malawi. Plants were evaluated during the reproductive growth stages using a visual pretransformed severity rating scale. Foliar disease ratings were recorded for three bacterial diseases, six fungal diseases, one oomycete, and viruses. The overall occurrence of most of the diseases was high except for soybean rust and target spot, which were only found at two and one location, respectively. However, disease severity was generally low, although there were differences in disease severity ratings among the entries at some of the locations for brown spot, downy mildew, frogeye leaf spot, red leaf blotch, and soybean rust.

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Assessment of Epidemic Potential of Soybean Rust in the United States

Plant Disease ◽

10.1094/pd-89-0678 ◽

2005 ◽

Vol 89 (6) ◽

pp. 678-682 ◽

Cited By ~ 29

Author(s):

S. Pivonia ◽

X. B. Yang ◽

Z. Pan

Keyword(s):

United States ◽

The United States ◽

Soybean Rust ◽

Phakopsora Pachyrhizi ◽

Long Distance Dispersal ◽

Long Distance ◽

Climate Conditions ◽

Soybean Production ◽

Critical Components ◽

Production Areas

This article assesses the epidemic potential of soybean rust (Phakopsora pachyrhizi) in the United States. In the assessment, there are three critical components of uncertainty: (i) suitability of climate conditions in production areas for soybean rust epidemics; (ii) likelihood of establishment of the fungus in North America; and (iii) the seasonal dispersal potential of the pathogen from overwintering regions to major soybean production regions. Assessments on the first and second components suggest soybean rust epidemics are likely in the United States, and the certainty of the third component is yet to be determined. Comparison of epidemiological factors for soybean rust in soybean production regions between China and the United States shows a complicated picture with the United States having factors that both increase and decrease risk. Future investigation of risk components—incipience in the field and long-distance dispersal—is needed.

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Reaction of Exotic Soybean Germplasm to Phakopsora pachyrhizi in Uganda

Plant Disease ◽

10.1094/pdis-92-11-1493 ◽

2008 ◽

Vol 92 (11) ◽

pp. 1493-1496 ◽

Cited By ~ 14

Author(s):

H. K. Oloka ◽

P. Tukamuhabwa ◽

T. Sengooba ◽

S. Shanmugasundram

Keyword(s):

Research And Development ◽

Resistance Genes ◽

Rust Resistance ◽

Growth Stage ◽

Resistance Breeding ◽

Soybean Rust ◽

Phakopsora Pachyrhizi ◽

Moderate Resistance ◽

Rust Resistance Genes

Host plant resistance is the best long-term strategy for managing soybean rust (Phakopsora pachyrhizi) in endemic areas. Resistance breeding efforts are hampered by the presence of several races of the pathogen that often overcome single resistance genes deployed against them. In Uganda, only two soybean cultivars show moderate resistance to Phakopsora pachyrhizi, but this is likely to break down given the aggressive nature of the pathogen. A total of 25 rust tolerant or resistant accessions were imported from the Asian Vegetable Research and Development Centre and screened at Namulonge, in central Uganda. Only 10 accessions, G 33, G 8527, G8586, G 8587, GC 60020-8-7-7-18, GC 87016-11-B-2, GC 87021-26-B-1, SRE-D-14A, SRE-D-14B, and SS 86045-23-2, showed no rust symptoms at growth stage R6 during the three seasons of testing. Soybean rust resistance genes Rpp1, Rpp3, and Rpp4 did not confer resistance at Namulonge; gene Rpp2 was effective.

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First Report of Phakopsora pachyrhizi, the Causal Agent of Asian Soybean Rust, on Florida Beggarweed in the United States

Plant Disease ◽

10.1094/pd-90-0972a ◽

2006 ◽

Vol 90 (7) ◽

pp. 972-972 ◽

Cited By ~ 7

Author(s):

L. E. Sconyers ◽

R. C. Kemerait ◽

J. H. Brock ◽

R. D. Gitaitis ◽

F. H. Sanders ◽

...

Keyword(s):

United States ◽

Pcr Primers ◽

The United States ◽

Soybean Rust ◽

Phakopsora Pachyrhizi ◽

Asian Soybean Rust ◽

Abaxial Leaf Surface ◽

Humidity Chamber ◽

Average Size ◽

Soybean Diseases

Phakopsora pachyrhizi Syd. & P. Syd., which causes Asian soybean rust (SBR), was observed on Florida beggarweed, Desmodium tortuosum (Sw) DC., in Attapulgus, GA during late October and early November 2005. Tan to brown lesions (<1.0 mm in diameter) consistent with symptoms of SBR (2) were observed on older leaves of several plants collected near an SBR-infected soybean trial. Dissection (40 to 60×) and compound microscopy (×200 to 400) revealed conical pustules and ellipsoid, echinulate urediniospores (average size 15 × 20 μm) on the abaxial leaf surface. Polymerase chain reaction (PCR) (primers Ppm1 and Ppa2) (1) was conducted on four samples to confirm identification of P. pachyrhizi or P. meibomiae. Three were positive for P. pachyrhizi, and one was negative for both species. Using morphology and real-time PCR, SBR was confirmed as P. pachyrhizi by the USDA/APHIS in Beltsville, MD. Six noninfected Florida beggarweed plants were transplanted to pots during December 2005 and grown at 22 to 24°C in a greenhouse. On 11 January 2006, a water suspension of urediniospores collected from SBR-infected soybeans (1 × 105 spores per ml) was spray inoculated on all leaves to almost runoff and incubated for 48 h in a plastic humidity chamber. Lesions, pustules, and urediniospores consistent with SBR (2) were observed on 3 February 2006. A PCR assay was conducted on six samples from the infected greenhouse plants and all were positive for P. pachyrhizi. Florida beggarweed is widespread in the southern United States and may serve as an additional overwintering source for P. pachyrhizi and a potential inoculum source for the soybean crop. References: (1) R. D. Fredrick et al. Phytopathology 92:217, 2002. (2) J. B. Sinclair and G. L. Hartman. Soybean rust. Pages 25–26 in: Compendium of Soybean Diseases. 4th ed. G. L. Hartman et al., eds. The American Phytopathological Society, St. Paul, MN, 1999.

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