scholarly journals Draft Genome Sequence Data of Glutamicibacter sp. FBE-19, a Bacterium Antagonistic to the Plant Pathogen Erwinia tracheiphila

2020 ◽  
Author(s):  
Benzhong Fu ◽  
Olakunle Olawole ◽  
Gwyn A Beattie
Keyword(s):  
Genome Sequence ◽  
Bacterial Blight ◽  
Sequence Data ◽  
Draft Genome ◽  
Antagonistic Activity ◽  
Chitinolytic Activity ◽  
Erwinia Tracheiphila ◽  
Genome Data ◽  
Bacterial Blight Pathogen ◽  
Promote Plant Growth

Glutamicibacter sp.FBE-19 was isolated based on its strong antagonism to the cucurbit bacterial blight pathogen Erwinia tracheiphila on plates. Members of the Glutamicibacter genus can promote plant growth under saline conditions and antagonize fungi on plates via chitinolytic activity, but their production of antibacterial compounds has not been examined. Here we report the genome sequence of strain FBE-19. The genome is 3.85 Mbp with a G+C content of 60.1% and comprised of 3,791 genes. Genes that may contribute to its antagonistic activity include genes for the secondary metabolites stenothricin, salinosporamide A, a second beta-lactone compound, and a carotenoid. The Glutamicibacter sp. FBE-19 genome data may be a useful resource if this strain proves an effective biocontrol agent against E. tracheiphila.

scholarly journals Draft genome sequence data of the facultative, thermophilic, xylanolytic bacterium Paenibacillus sp. strain DA-C8

Data in Brief ◽  
2021 ◽  
Vol 35 ◽  
pp. 106784
Author(s):  
Chinda Chhe ◽  
Ayaka Uke ◽  
Sirilak Baramee ◽  
Umbhorn Ungkulpasvich ◽  
Chakrit Tachaapaikoon ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Sequence Data ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Genome Sequence Data ◽  
Paenibacillus Sp

scholarly journals Draft genome sequence data of a chromium reducing bacterium, Bacillus licheniformis strain KNP

Data in Brief ◽  
2021 ◽  
Vol 34 ◽  
pp. 106640
Author(s):  
Pankaj Kumar Arora ◽  
Rupali Mishra ◽  
Rishabh Anand Omar ◽  
Raj Shekhar Saroj ◽  
Alok Srivastava ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Bacillus Licheniformis ◽  
Sequence Data ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Genome Sequence Data ◽  
Bacterium Bacillus

scholarly journals The Genome Sequence of the Anthelmintic-Susceptible New Zealand Haemonchus contortus

2019 ◽  
Vol 11 (7) ◽  
pp. 1965-1970 ◽  
Author(s):  
Nikola Palevich ◽  
Paul H Maclean ◽  
Abdul Baten ◽  
Richard W Scott ◽  
David M Leathwick
Keyword(s):  
Genome Sequence ◽  
Molecular Mechanisms ◽  
De Novo ◽  
Sequence Data ◽  
Animal Health ◽  
Draft Genome ◽  
Whole Genome Sequence ◽  
Parasitic Nematodes ◽  
Hybrid Assembly ◽  
Genetic Structures

Abstract Internal parasitic nematodes are a global animal health issue causing drastic losses in livestock. Here, we report a H. contortus representative draft genome to serve as a genetic resource to the scientific community and support future experimental research of molecular mechanisms in related parasites. A de novo hybrid assembly was generated from PCR-free whole genome sequence data, resulting in a chromosome-level assembly that is 465 Mb in size encoding 22,341 genes. The genome sequence presented here is consistent with the genome architecture of the existing Haemonchus species and is a valuable resource for future studies regarding population genetic structures of parasitic nematodes. Additionally, comparative pan-genomics with other species of economically important parasitic nematodes have revealed highly open genomes and strong collinearities within the phylum Nematoda.

scholarly journals Genome Sequence of Pseudomonas sp. Strain AN3A02, Isolated from Rhizosphere of Deschampsia antarctica Desv., with Antagonism against Botrytis cinerea

2020 ◽  
Vol 9 (21) ◽  
Author(s):  
Matías Poblete-Morales ◽  
Claudia Rabert ◽  
Andrés F. Olea ◽  
Héctor Carrasco ◽  
Raúl Calderón ◽  
...  
Keyword(s):  
Botrytis Cinerea ◽  
Genome Sequence ◽  
Sequence Data ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Deschampsia Antarctica ◽  
Dual Culture ◽  
Content Type ◽  
A Genome ◽  
Antarctic Continent

ABSTRACT Here, we announce the draft genome sequence of Pseudomonas sp. strain AN3A02, isolated from the rhizosphere of one of the only two species of vascular plants existing in the Antarctic continent, Deschampsia antarctica Desv. This isolate, which inhibited the mycelial growth of Botrytis cinerea in dual culture, has a genome sequence of 6,778,644 bp, with a G+C content of 60.4%. These draft genome sequence data provide insight into the genetics underpinning the antifungal activity of this strain.

scholarly journals Draft genome sequence of the producer strain of aureocin 4181, an antimicrobial peptide with antagonistic activity against multidrug-resistant staphylococci

2020 ◽  
Vol 23 ◽  
pp. 331-333
Author(s):  
Selda Loase Salustiano Marques-Bastos ◽  
Marcus Lívio Varella Coelho ◽  
Ilana Nascimento de Sousa Santos ◽  
Felipe Miceli Farias ◽  
Márcia Silva Francisco ◽  
...  
Keyword(s):  
Antimicrobial Peptide ◽  
Genome Sequence ◽  
Draft Genome ◽  
Multidrug Resistant ◽  
Antagonistic Activity ◽  
Draft Genome Sequence ◽  
Producer Strain

Drosophila genomes and the development of affordable molecular markers for species genotyping

Genome ◽  
2011 ◽  
Vol 54 (4) ◽  
pp. 341-347 ◽  
Author(s):  
Leigh Minuk ◽  
Alberto Civetta
Keyword(s):  
Molecular Markers ◽  
Genome Sequence ◽  
Sequence Data ◽  
Closely Related Species ◽  
Genome Sequence Data ◽  
Sequencing Errors ◽  
Genome Data ◽  
Indel Polymorphisms ◽  
Partial Genome ◽  
Rule Out

The recent completion of genome sequencing of 12 species of Drosophila has provided a powerful resource for hypothesis testing, as well as the development of technical tools. Here we take advantage of genome sequence data from two closely related species of Drosophila, Drosophila simulans and Drosophila sechellia, to quickly identify candidate molecular markers for genotyping based on expected insertion or deletion (indel) differences between species. Out of 64 candidate molecular markers selected along the second and third chromosome of Drosophila, 51 molecular markers were validated using PCR and gel electrophoresis. We found that the 20% error rate was due to sequencing errors in the genome data, although we cannot rule out possible indel polymorphisms. The approach has the advantage of being affordable and quick, as it only requires the use of bioinformatics tools for predictions and a PCR and agarose gel based assay for validation. Moreover, the approach could be easily extended to a wide variety of taxa with the only limitation being the availability of complete or partial genome sequence data.

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