scholarly journals Parabirojimia multinucleata spec. nov. and Anteholosticha scutellum (Cohn, 1866) Berger, 2003, marine ciliates (Ciliophora, Hypotrichida) from tropical waters in southern China, with notes on their small-subunit rRNA gene sequences

2010 ◽  
Vol 60 (1) ◽  
pp. 234-243 ◽  
Author(s):  
Xiangrui Chen ◽  
Shan Gao ◽  
Weibo Song ◽  
Khaled A. S. Al-Rasheid ◽  
Alan Warren ◽  
...  
Keyword(s):  
Southern China ◽  
Small Subunit ◽  
Rrna Gene ◽  
Small Subunit Rrna ◽  
Cortical Granules ◽  
Morphological Studies ◽  
Small Subunit Rrna Gene ◽  
New Information ◽  
Modern Methods

Few studies using modern methods have been carried out on ciliated protozoa in tropical marine waters. In the present work, two hypotrichs, Parabirojimia multinucleata spec. nov. and Anteholosticha scutellum (Cohn, 1866) Berger, 2003, collected from Daya Bay in southern China, were investigated morphologically. P. multinucleata is distinguished by the following combination of characters: slender body, without a snout-like protrusion in the frontal field, and about 50 macronuclear nodules. The poorly known A. scutellum has never been investigated using modern methods; hence, a redescription is needed. During the present study, observations of specimens in vivo and following protargol impregnation revealed new information concerning structures such as the cortical granules and the infraciliature. A redescription and improved diagnosis are supplied based on the China population. The small-subunit (SSU) rRNA gene was sequenced for both organisms and comparisons with those of similar congeners clearly support the findings based on morphological studies.

Morphological studies and molecular data on a new marine ciliate, Apokeronopsis sinica n. sp. (Ciliophora: Urostylida), from the South China Sea

Zootaxa ◽  
2009 ◽  
Vol 2005 (1) ◽  
pp. 57-66 ◽  
Author(s):  
WEIWEI LIU ◽  
JIQIU LI ◽  
SHAN GAO ◽  
CHEN SHAO ◽  
JUN GONG ◽  
...  
Keyword(s):  
Molecular Data ◽  
Small Subunit ◽  
Rrna Gene ◽  
Small Subunit Rrna ◽  
Cortical Granules ◽  
Marine Ciliate ◽  
Morphological Studies ◽  
Small Subunit Rrna Gene ◽  
Morphological And Molecular Data

The morphology of a new marine urostylid ciliate, Apokeronopsis sinica n. sp., collected from the Clear Water Bay, Hong Kong, was investigated. Additionally, the SSrRNA gene was sequenced in order to make a comparison at molecular level. Based on both morphological and molecular data, descriptions and comparisons with its congeners are provided. Apokeronopsis sinica is characterized by: body size about 150–200 × 50–65 µm in vivo; two kinds of cortical granules; about 20 cirri in frontal area which form the non-typical bicorona; 2 frontoterminal, ca. 4 buccal and 10 transverse cirri; midventral complex consists of 21–32 pairs of cirri; on average 35 right and 30 left marginal cirri; about 50 membranelles; invariably 3 dorsal kineties. A key to the identification of the known Apokeronopsis species was suggested. The small subunit rRNA gene sequence differences between Apokeronopsis sinica and its congeners range from 1.64% to 3.72%.

Morphology, morphogenesis and small-subunit rRNA gene sequence of the novel brackish-water ciliate Strongylidium orientale sp. nov. (Ciliophora, Hypotrichia)

2013 ◽  
Vol 63 (Pt_3) ◽  
pp. 1155-1164 ◽  
Author(s):  
Xumiao Chen ◽  
Miao Miao ◽  
Honggang Ma ◽  
Chen Shao ◽  
Khaled A. S. Al-Rasheid
Keyword(s):  
De Novo ◽  
Southern China ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
Rrna Gene ◽  
Small Subunit Rrna ◽  
Cortical Granules ◽  
Posterior Portion ◽  
Small Subunit Rrna Gene

A novel stichotrich ciliate, Strongylidium orientale sp. nov., was discovered from a mangrove river in Hong Kong, southern China, and its morphology was investigated through observations in vivo and after protargol impregnation. Cells are 80–120×35–50 µm in vivo and fusiform in shape, with rounded anterior and tapered posterior ends. It is characterized by its brackish habitat and by the presence of two types of cortical granules arranged irregularly throughout the cortex. Morphogenetic events of cell division and physiological reorganization are described. The main ontogenetic features were: (i) only the posterior portion of the parental adoral zone of membranelles was renewed by dedifferentiation of the old structures; (ii) the oral primordium in the opisthe occurred apokinetally; (iii) the left and right ventral rows originated intrakinetally and the final left ventral row was spliced from two cirri from the frontoventral cirral anlage, a short cirral row from the anlage for the right ventral row and a long cirral row which was formed from the whole anlage of the left ventral row; (iv) the marginal rows developed intrakinetally; (v) the dorsal kineties replicated entirely de novo and did not fragment; and (vi) the two macronuclear nodules fused into a mass and then divided. Based on small-subunit rRNA gene sequences, phylogenetic analyses showed a close relationship with its congener Strongylidium pseudocrassum and with the genus Pseudouroleptus.

Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta). 1. Evidence for the Plocamiales ord.nov.

1994 ◽  
Vol 72 (9) ◽  
pp. 1250-1263 ◽  
Author(s):  
G. W. Saunders ◽  
G. T. Kraft
Keyword(s):  
Phylogenetic Analyses ◽  
Small Subunit ◽  
Rrna Gene ◽  
Small Subunit Rrna ◽  
Chain Reaction ◽  
Small Subunit Rrna Gene ◽  
New Information ◽  
The Family ◽  
Close Relationship ◽  
Polymerase Chain

Nucleotide sequences of the nuclear, small-subunit (SSU) ribosomal RNAs, as inferred from polymerase chain reaction (PCR)-amplified products, are presented for Areschougia congesta (Turner) J. Agardh (Solieriaceae), Dasyphloea insignis Montagne (Dumontiaceae), Sarcothalia crassifolia (C. Agardh) Edyvane & Womersley (Gigartinaceae), Nizymenia australis Sonder (Nizymeniaceae), Phacelocarpus peperocarpos (Poiret) Wynne, Ardré & Silva (Phacelocarpaceae), Plocamiocolax pulvinata Setchell, Plocamium angustum (J. Agardh) J.D. Hooker, Plocamium cartilagineum (Linnaeus) Dixon (Plocamiaceae), Rhodymenia linearis J. Agardh (Rhodymeniaceae), and Sphaerococcus coronopifolius Stackhouse (Sphaerococcaceae). Phylogenetic analyses of the SSU sequences between the Plocamiaceae and members of the Sphaerococcaceae, Phacelocarpaceae, and Nizymeniaceae, with which the Plocamiaceae has been associated historically, show SSU differences of between 87 and 105 nucleotides and do not indicate a close relationship. A review of anatomical knowledge of the Plocamiaceae and Pseudoanemoniaceae and new information on vegetative and tetrasporangial development in Plocamium and Plocamiocolax are presented to buttress a case for the Plocamiales ord.nov. Representatives of the Nizymeniaceae and Phacelocarpaceae differ from one another by only nine nucleotides, suggesting that these two taxa are very closely related and perhaps not distinct at the family rank. Key words: Gigartinales, PCR, phylogeny, Plocamiales ord.nov., Pseudoanemoniaceae, Rhodophyta, small-subunit rRNA, systematics.

scholarly journals Characterization of two urostylid ciliates, Metaurostylopsis flavicana spec. nov. and Tunicothrix wilberti (Lin & Song, 2004) Xu et al., 2006 (Ciliophora, Stichotrichia), from a mangrove nature protection area in China

2011 ◽  
Vol 61 (7) ◽  
pp. 1740-1750 ◽  
Author(s):  
Yangang Wang ◽  
Xiaozhong Hu ◽  
Jie Huang ◽  
Khaled A. S. Al-Rasheid ◽  
Alan Warren
Keyword(s):  
Phylogenetic Trees ◽  
Small Subunit ◽  
The Body ◽  
Rrna Gene ◽  
Small Subunit Rrna ◽  
Cortical Granules ◽  
Nature Protection ◽  
Small Subunit Rrna Gene ◽  
Protection Area

Two marine stichotrich ciliates, Metaurostylopsis flavicana spec. nov. and Tunicothrix wilberti (Lin & Song, 2004) Xu et al., 2006, isolated from the Shenzhen Mangrove Protection Area on the coast of the South China Sea, were investigated using live observation and protargol impregnation techniques. Metaurostylopsis flavicana is characterized by its elongate body shape, yellowish body colour and bright-yellow cortical granules that are either grouped around the cirri and the dorsal cilia or aligned between the rows of cirri and dorsal cilia. It has four to eight frontal, two frontoterminal, one buccal and seven to ten transverse cirri, a mid-ventral complex comprising 13–17 midventral cirral pairs in a row that extends about three-fifths of the body length, four left and three right marginal rows and three complete dorsal kineties. The small subunit rRNA gene of this species was sequenced and phylogenetic trees were constructed in which M. flavicana does not group with its congeners, suggesting that the genus Metaurostylopsis is paraphyletic. Some supplementary morphological and morphogenetic traits for Tunicothrix wilberti are also documented.

Taxonomy, morphology and phylogeny of three new oligotrich ciliates (Protozoa, Ciliophora, Oligotrichia) from southern China

2013 ◽  
Vol 63 (Pt_12) ◽  
pp. 4805-4817 ◽  
Author(s):  
Weiwei Liu ◽  
Zhenzhen Yi ◽  
Jiqiu Li ◽  
Alan Warren ◽  
Saleh A. Al-Farraj ◽  
...  
Keyword(s):  
Southern China ◽  
Ventral Side ◽  
Small Subunit ◽  
Posterior Pole ◽  
Rrna Gene ◽  
Gene Trees ◽  
Small Subunit Rrna ◽  
Posterior Portion ◽  
Small Subunit Rrna Gene ◽  
Protozoa Ciliophora

Oligotrich ciliates are common members of marine microplankton. However, their biodiversity is not well documented. In this study, the morphology and phylogenetic positions of three new oligotrich species, Spirostrombidium apourceolare spec. nov., Spirostrombidium subtropicum spec. nov. and Parallelostrombidium conicum spec. nov., collected from coastal habitats of southern China, were investigated. Spirostrombidium apourceolare is characterized by the girdle kinety which encircles the cell twice as two dextrally oriented whorls with some undulations and by the presence of several macronuclear nodules. Spirostrombidium subtropicum is recognized by the girdle kinety encircling the cell as two dextrally oriented whorls and extrusomes arranged in a stripe along the girdle kinety. Parallelostrombidium conicum differs from its congeners by the obconic body shape and the posterior portion of the girdle kinety extending downwards on the left ventral side to reach the posterior pole. In small-subunit rRNA gene trees, S. subtropicum clusters with Omegastrombidium elegans and Varistrombidium kielum, and Parallelostrombidium conicum is sister to the clade containing Novistrombidium sinicum, Novistrombidium orientale and Parallelostrombidium sp.

Two novel marine Frontonia species, Frontonia mengi spec. nov. and Frontonia magna spec. nov. (Protozoa; Ciliophora), with notes on their phylogeny based on small-subunit rRNA gene sequence data

2011 ◽  
Vol 61 (6) ◽  
pp. 1476-1486 ◽  
Author(s):  
Xinpeng Fan ◽  
Xiangrui Chen ◽  
Weibo Song ◽  
Khaled A. S. Al-Rasheid ◽  
Alan Warren
Keyword(s):  
Phylogenetic Trees ◽  
Gene Sequence ◽  
Sequence Data ◽  
Southern China ◽  
Small Subunit ◽  
Width Ratio ◽  
Rrna Gene ◽  
Small Subunit Rrna ◽  
Small Subunit Rrna Gene ◽  
Protozoa Ciliophora

The morphology and infraciliature of two novel marine ciliates, Frontonia mengi spec. nov. and Frontonia magna spec. nov., isolated from coastal waters in northern and southern China, respectively, were investigated using living observation and silver impregnation methods. Frontonia mengi spec. nov. is characterized by its slender body shape, with a length-to-width ratio of about 5 : 1, about 52 somatic kineties and the structure of its buccal apparatus. Frontonia magna spec. nov. can be recognized by the combination of huge body size, about 200 somatic kineties, five or six vestibular kineties and four-rowed peniculi 1–3. Phylogenetic trees based on small-subunit rRNA gene sequences were constructed by means of Bayesian inference and maximum-parsimony. Results showed that F. mengi and F. magna are sister to each other within the ‘core’ clade of Frontonia that also includes Frontonia lynni and Frontonia tchibisovae and that the genus Frontonia may be polyphyletic, because one species, Frontonia didieri, always groups with Paramecium and Apofrontonia.

Establishing mono-eukaryotic Histomonas meleagridis cultures from in vivo infection contaminated with Tetratrichomonas gallinarum and Blastocystis spp.

Parasitology ◽  
2013 ◽  
Vol 140 (10) ◽  
pp. 1266-1274 ◽  
Author(s):  
ANH DAO NGUYEN PHAM ◽  
JAN MAST ◽  
JEROEN KOEN DE GUSSEM ◽  
LARRY R. MCDOUGALD ◽  
BRUNO MARIA GODDEERIS
Keyword(s):  
Culture Media ◽  
Pcr Amplification ◽  
Small Subunit ◽  
Rrna Gene ◽  
Small Subunit Rrna ◽  
Morphological Evaluation ◽  
Small Subunit Rrna Gene ◽  
Transmission Electron ◽  
Successful Approach

SUMMARYThe necessity to easily establish Histomonas meleagridis cultures has been underlined extensively by many researchers in order to gain more insights in the biology of H. meleagridis. In addition the occurrence of different protozoa in the caeca of birds impedes, however, the isolation and propagation of H. meleagridis from field outbreaks. Therefore, in a kinetic study using transmission electron microscopy the deleterious effects of adventitious protozoa including Tetratrichomonas gallinarum and Blastocystis spp. on cultured H. meleagridis were examined. To overcome this issue, an easy and successful approach to establish the mono-eukaryotic H. meleagridis culture free of other host's protozoa is proposed. At 10 days post infection, liver lesions of H. meleagridis-infected birds were isolated and inoculated into culture media pre-incubated with caecal bacteria. After 48 h of incubation, presence of H. meleagridis in the cultures was confirmed through morphological evaluation. Additionally, TEM examination and analysis by PCR amplification of the small subunit rRNA gene could exclude the co-cultivation of T. gallinarum and Blastocystis spp. Furthermore, after successful propagation and maintenance of the cultured H. meleagridis, its pathogenicity was affirmed in an infection experiment in turkeys.

Morphology and small-subunit rRNA gene sequences of two novel marine ciliates, Metanophrys orientalis spec. nov. and Uronemella sinensis spec. nov. (Protista, Ciliophora, Scuticociliatia), with an improved diagnosis of the genus Uronemella

2013 ◽  
Vol 63 (Pt_9) ◽  
pp. 3515-3523 ◽  
Author(s):  
Xuming Pan ◽  
Mingzhuang Zhu ◽  
Honggang Ma ◽  
Khaled A. S. Al-Rasheid ◽  
Xiaozhong Hu
Keyword(s):  
Body Length ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
Contractile Vacuole ◽  
Rrna Gene ◽  
Small Subunit Rrna ◽  
Gene Sequences ◽  
Marine Habitat ◽  
Small Subunit Rrna Gene

The morphology and infraciliature of two novel marine scuticociliates, Metanophrys orientalis spec. nov. and Uronemella sinensis spec. nov., collected from sandy beaches at Qingdao, China, were investigated using live observation and protargol-staining methods. Metanophrys orientalis spec. nov. is distinguished by the following characteristics: marine habitat and a slender to elongate oval body with pointed anterior end and rounded caudal end, in vivo about 25–50 µm long; buccal field about a quarter to a third of body length; nine or ten somatic kineties with dikinetids approximately in anterior half of body, monokinetids in posterior half; membranelles 1 and 2 almost equal in length and composed of two and three longitudinal rows of kinetids respectively; paroral membrane with zigzag structure extending anteriorly to middle portion of membranelle 2; contractile vacuole pore located at posterior end of somatic kinety 1. The genus Uronemella is redefined as follows: marine form with an elongate-elliptical or inverted pear-shaped body; apical plate conspicuous; buccal field about two-thirds of body length, cytostome subequatorially located; oral apparatus Uronema-like; somatic kineties comprising a mixture of dikinetids and monokinetids. Uronemella sinensis spec. nov. is recognized by having an elongate-elliptical body with truncated apical frontal plate, size in vivo about 25–35×15–20 µm, nine or ten somatic kineties, membranelle 1 consisting of two or three basal bodies, contractile vacuole pore at posterior end of somatic kinety 1. This study also compared the small-subunit rRNA gene sequences of these two species with other closely related species to show the sequence divergence, which ranged from 3.53 to 9.60 %. Phylogenetic analyses support the contention that the genus Uronemella is monophyletic, while Metanophrys is non-monophyletic.

Morphology and phylogenies of two hypotrichous brackish-water ciliates from China, Neourostylopsis orientalis n. sp. and Protogastrostyla sterkii (Wallengren, 1900) n. comb., with establishment of a new genus Neourostylopsis n. gen. (Protista, Ciliophora, Hypotrichia)

2013 ◽  
Vol 63 (Pt_3) ◽  
pp. 1197-1209 ◽  
Author(s):  
Xiangrui Chen ◽  
Chen Shao ◽  
Xihan Liu ◽  
Jie Huang ◽  
Khaled A. S. Al-Rasheid
Keyword(s):  
New Genus ◽  
Southern China ◽  
Molecular Data ◽  
Small Subunit ◽  
Rrna Gene ◽  
Ssu Rrna ◽  
Cortical Granules ◽  
Ssu Rrna Gene ◽  
Shape Ratio

This paper investigates the morphology, infraciliature and small-subunit (SSU) rRNA gene sequences of two hypotrichous ciliates, Neourostylopsis orientalis n. sp., and Protogastrostyla sterkii (Wallengren, 1900) n. comb. (basionym Gastrostyla sterkii), collected from coastal waters in southern China. Neourostylopsis orientalis n. sp. is diagnosed mainly by the arrangement of brownish cortical granules, the numbers of adoral membranelles and frontal and transverse cirri and the characteristics of its midventral cirral pairs. The SSU rRNA gene phylogeny strongly supports the establishment of the new genus Neourostylopsis n. gen., which is characterized mainly by the following features: frontal and transverse cirri clearly differentiated, buccal cirri present, two frontoterminal cirri, midventral complex composed of midventral pairs only and not exceeding the halfway point of the cell, more than one row of marginal cirri on each side which derive from individual anlagen within each parental row, caudal cirri lacking. Thus, two new combinations are required: Neourostylopsis songi (Lei et al., 2005) n. comb., and Neourostylopsis flavicana (Wang et al., 2011) n. comb. Additionally, improved diagnoses for both Metaurostylopsis and Apourostylopsis are supplied in this study. Protogastrostyla sterkii (Wallengren, 1900) n. comb. differs from the similar congener Protogastrostyla pulchra mainly in body shape, ratio of buccal field to body length in vivo and molecular data. Based on the present studies, we conclude that the estuarine population of P. pulchra collected by J. Gong and others [Gong et al., J Eukaryot Microbiol (2007) 54, 468–478] is a population of P. sterkii.

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