scholarly journals Caminibacter profundus sp. nov., a novel thermophile of Nautiliales ord. nov. within the class ‘Epsilonproteobacteria’, isolated from a deep-sea hydrothermal vent

2004 ◽  
Vol 54 (1) ◽  
pp. 41-45 ◽  
Author(s):  
M. L. Miroshnichenko ◽  
S. L'Haridon ◽  
P. Schumann ◽  
S. Spring ◽  
E. A. Bonch-Osmolovskaya ◽  
...  
Keyword(s):  
Deep Sea ◽  
Hydrothermal Vent ◽  
New Order ◽  
Rrna Gene ◽  
Single Family ◽  
Moderately Thermophilic ◽  
Phenotypic Differences ◽  
Phylogenetic Data ◽  
Mid Atlantic Ridge ◽  
Obligate Chemolithoautotroph

A novel moderately thermophilic, microaerobic to anaerobic, chemolithoautotrophic bacterium, designated strain CRT, was isolated from a deep-sea hydrothermal vent site at 36°N on the Mid-Atlantic Ridge. Cells were Gram-negative, non-motile rods. The organism grew at 45–65 °C and pH 6·5–7·4, with optimum growth at 55 °C and pH 6·9–7·1. The NaCl range for growth was 5–50 g l−1 (optimum 30 g l−1). Strain CRT was an obligate chemolithoautotroph, growing with H2 as energy source, sulfur, nitrate or oxygen as electron acceptors and CO2 as carbon source. Hydrogen sulfide and ammonium were the respective products of sulfur and nitrate reduction. The G+C content of the genomic DNA was 32·1 mol%. Based on 16S rRNA gene sequence analysis, this organism was most closely related to Caminibacter hydrogeniphilus (94·9 % similarity). On the basis of phenotypic and phylogenetic data, it is proposed that the isolate represents a novel species, Caminibacter profundus sp. nov. The type strain is CRT (=DSM 15016T=JCM 11957T). The phylogenetic data also correlate well with the significant phenotypic differences between the lineage encompassing the genera Nautilia and Caminibacter and other members of the class ‘Epsilonproteobacteria’. The lineage encompassing the genera Nautilia and Caminibacter is therefore proposed as a new order, Nautiliales ord. nov., represented by a single family, Nautiliaceae fam. nov.

scholarly journals Caminibacter mediatlanticus sp. nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge

2005 ◽  
Vol 55 (2) ◽  
pp. 773-779 ◽  
Author(s):  
James W. Voordeckers ◽  
Valentin Starovoytov ◽  
Costantino Vetriani
Keyword(s):  
Deep Sea ◽  
Hydrothermal Vent ◽  
Gene Sequence ◽  
Novel Species ◽  
Rrna Gene ◽  
Optimal Conditions ◽  
Rrna Gene Sequence ◽  
Optimum Ph ◽  
Mid Atlantic Ridge ◽  
The 16S Rrna Gene

A thermophilic, anaerobic, chemolithoautotrophic bacterium, designated strain TB-2T, was isolated from the walls of an active deep-sea hydrothermal vent chimney on the Mid-Atlantic Ridge at 36° 14′ N 33° 54′ W. The cells were Gram-negative rods approximately 1·5 μm in length and 0·75 μm in width. Strain TB-2T grew between 45 and 70 °C (optimum 55 °C), 10 and 40 g NaCl l−1 (optimum 30 g l−1) and pH 4·5 and 7·5 (optimum pH 5·5). Generation time under optimal conditions was 50 min. Growth occurred under chemolithoautotrophic conditions with H2 as the energy source and CO2 as the carbon source. Nitrate or sulfur was used as the electron acceptor, with resulting production of ammonium and hydrogen sulfide, respectively. Oxygen, thiosulfate, sulfite, selenate and arsenate were not used as electron acceptors. Growth was inhibited by the presence of acetate, lactate, formate and peptone. The G+C content of the genomic DNA was 25·6 mol%. Phylogenetic analysis of the 16S rRNA gene sequence indicated that this organism is closely related to Caminibacter hydrogeniphilus and Caminibacter profundus (95·9 and 96·3 % similarity, respectively). On the basis of phylogenetic, physiological and genetic considerations, it is proposed that the organism represents a novel species within the genus Caminibacter, Caminibacter mediatlanticus sp. nov. The type strain is TB-2T (=DSM 16658T=JCM 12641T).

scholarly journals Vulcanibacillus modesticaldus gen. nov., sp. nov., a strictly anaerobic, nitrate-reducing bacterium from deep-sea hydrothermal vents

2006 ◽  
Vol 56 (5) ◽  
pp. 1047-1053 ◽  
Author(s):  
S. L'Haridon ◽  
M. L. Miroshnichenko ◽  
N. A. Kostrikina ◽  
B. J. Tindall ◽  
S. Spring ◽  
...  
Keyword(s):  
Deep Sea ◽  
Hydrothermal Vents ◽  
Gene Sequence ◽  
Rrna Gene ◽  
Strictly Anaerobic ◽  
The Novel ◽  
Moderately Thermophilic ◽  
Ph Values ◽  
Mid Atlantic Ridge ◽  
The 16S Rrna Gene

A novel anaerobic, moderately thermophilic, spore-forming bacterium, designated strain BRT, was isolated from deep-sea hydrothermal core samples collected at the Rainbow vent field on the Mid-Atlantic Ridge (36° 14′ N 33° 54′ W). The cells were found to be rod-shaped, non-motile, Gram-positive and spore-forming. The organism grew in the temperature range 37–60 °C, with an optimum at 55 °C, and at pH values in the range 6–8.5, with an optimum around pH 7. NaCl concentrations for growth were in the range 10–40 g l−1, with an optimum at 20–30 g l−1. Strain BRT grew chemo-organoheterotrophically with carbohydrates, proteinaceous substrates and organic acids with nitrate as electron acceptor. The novel isolate was not able to ferment. The G+C content of the genomic DNA was 34.5 mol%. Phylogenetic analysis of the 16S rRNA gene sequence placed strain BRT in the Bacillaceae within the class ‘Bacilli’. On the basis of the phenotypic and phylogenetic data, this isolate should be described as a member of a novel genus, for which the name Vulcanibacillus gen. nov. is proposed. The type species is Vulcanibacillus modesticaldus sp. nov., with the type strain BRT (=DSM 14931T=JCM 12998T).

scholarly journals Exiguobacterium profundum sp. nov., a moderately thermophilic, lactic acid-producing bacterium isolated from a deep-sea hydrothermal vent

2007 ◽  
Vol 57 (2) ◽  
pp. 287-292 ◽  
Author(s):  
Sylvaine Crapart ◽  
Marie-Laure Fardeau ◽  
Jean-Luc Cayol ◽  
Pierre Thomas ◽  
Christian Sery ◽  
...  
Keyword(s):  
Deep Sea ◽  
Hydrothermal Vent ◽  
Gene Sequence ◽  
Novel Species ◽  
Sequence Similarity ◽  
Rrna Gene ◽  
Moderately Thermophilic ◽  
East Pacific ◽  
Carbohydrate Fermentation ◽  
Exiguobacterium Profundum

A facultatively anaerobic, halotolerant, moderately thermophilic and non-sporulating bacterium, designated strain 10CT, was isolated from deep-sea hydrothermal vent samples collected on the 13° N East Pacific Rise at a depth of approximately 2600 m. Cells of strain 10CT were Gram-positive, motile rods, and grew optimally at 45 °C (range 12–49 °C), pH 7.0 (range pH 5.5–9.5) and 0–2 % NaCl (range 0–11 %). (+)-l-Lactate was the main organic acid detected from carbohydrate fermentation with traces of formate, acetate and ethanol. Strain 10CT was catalase-positive, oxidase-negative and reduced nitrate to nitrite under anaerobic conditions. The DNA G+C content was 50.4 mol%. Its closest phylogenetic relatives were Exiguobacterium aestuarii TF-16T and Exiguobacterium marinum TF-80T (16S rRNA gene sequence similarity >99 %). However, strain 10CT differed genotypically from these two Exiguobacterium species as indicated by DNA–DNA relatedness data. Therefore, on the basis of phenotypic, genotypic and phylogenetic characteristics, strain 10CT is considered to represent a novel species of the genus Exiguobacterium, for which the name Exiguobacterium profundum sp. nov. is proposed. The type strain is 10CT (=CCUG 50949T=DSM 17289T).

Mesoaciditoga lauensis gen. nov., sp. nov., a moderately thermoacidophilic member of the order Thermotogales from a deep-sea hydrothermal vent

2013 ◽  
Vol 63 (Pt_12) ◽  
pp. 4724-4729 ◽  
Author(s):  
Anna-Louise Reysenbach ◽  
Yitai Liu ◽  
Annie R. Lindgren ◽  
Isaac D. Wagner ◽  
Christine D. Sislak ◽  
...  
Keyword(s):  
Deep Sea ◽  
Hydrothermal Vent ◽  
New Genus ◽  
Heterotrophic Bacterium ◽  
Spreading Center ◽  
Rrna Gene ◽  
Content Type ◽  
Moderately Thermophilic ◽  
Optimum Ph ◽  
The 16S Rrna Gene

A novel moderately thermophilic, heterotrophic bacterium was isolated from a deep-sea hydrothermal vent deposit from the Mariner field along the Eastern Lau Spreading Center of the south-western Pacific Ocean. Cells were short motile rods (about 0.4×0.8 µm) that occurred singly or in pairs and were surrounded by a sheath-like membrane or ‘toga’. The cells grew between 45 and 65 °C (optimum 57–60 °C) and at pH 4.1–6.0 (optimum pH 5.5–5.7) and grew optimally at 3 % (w/v) NaCl. The isolate grew on a range of carbon and proteinaceous substrates and reduced sulfur. The G+C content of the DNA was about 45 mol%. Phylogenetic analysis of the 16S rRNA gene sequence placed the new isolate as a deeply diverging lineage within the order Thermotogales . Based on the physiological, morphological and phylogenetic data, the isolate represents a novel species of a new genus with the proposed name Mesoaciditoga lauensis gen. nov., sp. nov. The type strain of Mesoaciditoga lauensis is cd-1655RT ( = DSM 25116T = OCM 1212T).

Deferrisoma camini gen. nov., sp. nov., a moderately thermophilic, dissimilatory iron(III)-reducing bacterium from a deep-sea hydrothermal vent that forms a distinct phylogenetic branch in the Deltaproteobacteria

2012 ◽  
Vol 62 (Pt_10) ◽  
pp. 2463-2468 ◽  
Author(s):  
G. B. Slobodkina ◽  
A.-L. Reysenbach ◽  
A. N. Panteleeva ◽  
N. A. Kostrikina ◽  
I. D. Wagner ◽  
...  
Keyword(s):  
Deep Sea ◽  
Hydrothermal Vent ◽  
Sequence Similarity ◽  
Phylogenetic Analyses ◽  
Electron Donors ◽  
Rrna Gene ◽  
Content Type ◽  
Moderately Thermophilic ◽  
Link Type ◽  
Ph Range

A moderately thermophilic, anaerobic, dissimilatory iron(III)-reducing bacterium (strain S3R1T) was isolated from a deep-sea hydrothermal vent chimney located on the Eastern Lau Spreading Centre in the Pacific Ocean at a depth of about 2150 m. Cells of strain S3R1T were ovals to short rods with a single polar flagellum, Gram-stain-negative, 0.5–0.6 µm in diameter and 0.8–1.3 µm long, growing singly or in pairs. The temperature range for growth was 36–62 °C, with an optimum at 50 °C. The pH range for growth was 5.5–7.5, with an optimum at pH 6.5. Growth of strain S3R1T was observed at NaCl concentrations ranging from 1.0 to 5.0 % (w/v), with an optimum at 2.0–2.5 % (w/v). The isolate used acetate, fumarate, malate, maleinate, succinate, propanol, palmitate, stearate, peptone and yeast extract as electron donors for growth and iron(III) reduction. All electron donors were oxidized completely to CO2 and H2O. Iron(III) (in the form of ferrihydrite, ferric citrate or ferric nitrilotriacetate) and elemental sulfur (S0) were the electron acceptors that supported growth. The DNA G+C content was 64.4 mol%. Results of 16S rRNA gene sequence analysis showed that the novel bacterium was related to representatives of the orders Desulfuromonadales and Syntrophobacterales with 84–86 % sequence similarity and formed a distinct phylogenetic branch in the Deltaproteobacteria . On the basis of its physiological properties and results of phylogenetic analyses, it is proposed that the new isolate represents the sole species of a novel genus, Deferrisoma camini gen. nov., sp. nov. The type strain of Deferrisoma camini is S3R1T ( = DSM 24185T  = VKM B-2672T).

Microbial diversity in deep-sea sediments from the Menez Gwen hydrothermal vent system of the Mid-Atlantic Ridge

2015 ◽  
Vol 24 ◽  
pp. 343-355 ◽  
Author(s):  
Teresa Cerqueira ◽  
Diogo Pinho ◽  
Conceição Egas ◽  
Hugo Froufe ◽  
Bjørn Altermark ◽  
...  
Keyword(s):  
Microbial Diversity ◽  
Deep Sea ◽  
Hydrothermal Vent ◽  
Deep Sea Sediments ◽  
Mid Atlantic Ridge ◽  
Menez Gwen

Ultrastructural characteristics of spermatogenesis in three species of deep-sea hydrothermal vent mytilids

1997 ◽  
Vol 75 (2) ◽  
pp. 308-316 ◽  
Author(s):  
Marcel Le Pennec ◽  
Peter G. Beninger
Keyword(s):  
Deep Sea ◽  
Hydrothermal Vent ◽  
The North ◽  
Male Gametes ◽  
Bathymodiolus Thermophilus ◽  
Nutritional Biology ◽  
Protandric Hermaphroditism ◽  
Mid Atlantic Ridge ◽  
Ultrastructural Characteristics ◽  
Species Specific

To enhance our understanding of the reproductive biology of deep-sea hydrothermal vent mytilids, the histology of the male gonad and the ultrastructure of its gametes were studied in Bathymodiolus thermophilus, B. puteoserpentis, and B. elongatus. Specimens of B. thermophilus were collected at the 13°N site on the East Pacific ridge, while B. puteoserpentis were sampled from the Snake Pit site of the mid-Atlantic ridge and B. elongatus were obtained from the North Fiji Basin. Gonad histology conformed to the typical bivalve profile; the differences in the proportions of acinal and interacinal tissue, as well as differences in acinal fullness in B. puteoserpentis, indicate that gametogenesis is discontinuous in these deep-sea mytilids. Evidence of protandric hermaphroditism was observed in B. elongatus, which exhibited acini containing both maturing and residual male gametes and immature oocytes. The ultrastructural characteristics of the male gametes conform to those described for littoral bivalve species, and the spermatozoon is of the primitive type. No species-specific differences in spermatozoon ultrastructure were discerned. No evidence of bacterial inclusions was found in either the gametes or the associated gonad cells in any of the species examined. The male gametes are thus probably not vectors for the endosymbiotic bacteria that characterize the nutritional biology of the adults in this genus.

scholarly journals Growth and Phylogenetic Properties of Novel Bacteria Belonging to the Epsilon Subdivision of the Proteobacteria Enriched fromAlvinella pompejana and Deep-Sea Hydrothermal Vents

2001 ◽  
Vol 67 (10) ◽  
pp. 4566-4572 ◽  
Author(s):  
Barbara J. Campbell ◽  
Christian Jeanthon ◽  
Joel E. Kostka ◽  
George W. Luther ◽  
S. Craig Cary
Keyword(s):  
Deep Sea ◽  
Hydrothermal Vent ◽  
Hydrothermal Vents ◽  
Heterotrophic Bacteria ◽  
Geographic Location ◽  
Optimal Growth ◽  
Small Subunit ◽  
Ribosomal Gene ◽  
Moderately Thermophilic ◽  
Novel Bacteria

ABSTRACT Recent molecular characterizations of microbial communities from deep-sea hydrothermal sites indicate the predominance of bacteria belonging to the epsilon subdivision of Proteobacteria(epsilon Proteobacteria). Here, we report the first enrichments and characterizations of four epsilonProteobacteria that are directly associated withAlvinella pompejana, a deep sea hydrothermal vent polychete, or with hydrothermal vent chimney samples. These novel bacteria were moderately thermophilic sulfur-reducing heterotrophs growing on formate as the energy and carbon source. In addition, two of them (Am-H and Ex-18.2) could grow on sulfur lithoautrotrophically using hydrogen as the electron donor. Optimal growth temperatures of the bacteria ranged from 41 to 45°C. Phylogenetic analysis of the small-subunit ribosomal gene of the two heterotrophic bacteria demonstrated 95% similarity to Sulfurospirillum arcachonense, an epsilon Proteobacteria isolated from an oxidized marine surface sediment. The autotrophic bacteria grouped within a deeply branching clade of the epsilonProteobacteria, to date composed only of uncultured bacteria detected in a sample from a hydrothermal vent along the mid-Atlantic ridge. A molecular survey of various hydrothermal vent environments demonstrated the presence of two of these bacteria (Am-N and Am-H) in more than one geographic location and habitat. These results suggest that certain epsilonProteobacteria likely fill important niches in the environmental habitats of deep-sea hydrothermal vents, where they contribute to overall carbon and sulfur cycling at moderate thermophilic temperatures.

Crassaminicella thermophila sp. nov., a moderately thermophilic bacterium isolated from a deep-sea hydrothermal vent chimney and emended description of the genus Crassaminicella

2021 ◽  
Vol 71 (11) ◽  
Author(s):  
Xue-Gong Li ◽  
Jin Lin ◽  
Shi-Jie Bai ◽  
Jie Dai ◽  
Ze-Xi Jiao ◽  
...  
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Hydrothermal Vent ◽  
Type Species ◽  
Rrna Gene ◽  
Chromosomal Dna ◽  
Content Type ◽  
Moderately Thermophilic ◽  
Link Type ◽  
Emended Description

A novel moderately thermophilic, anaerobic, heterotrophic bacterium (strain SY095T) was isolated from a hydrothermal vent chimney located on the Southwest Indian Ridge at a depth of 2730 m. Cells were Gram-stain-positive, motile, straight to slightly curved rods forming terminal endospores. SY095T was grown at 45–60 °C (optimum 50–55 °C), pH 6.0–7.5 (optimum 7.0), and in a salinity of 1–4.5 % (w/v) NaCl (optimum 2.5 %). Substrates utilized by SY095T included fructose, glucose, maltose, N-acetyl glucosamine and tryptone. Casamino acid and amino acids (glutamate, glutamine, lysine, methionine, serine and histidine) were also utilized. The main end products from glucose fermentation were acetate, H2 and CO2. Elemental sulphur, sulphate, thiosulphate, sulphite, fumarate, nitrate, nitrite and Fe(III) were not used as terminal electron acceptors. The predominant cellular fatty acids were C14 : 0 (60.5%) and C16 : 0 (7.6 %). The main polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, five unidentified phospholipids and two unidentified aminophospholipids. No respiratory quinones were detected. The chromosomal DNA G+C content was 30.8 mol%. The results of phylogenetic analysis of the 16S rRNA gene sequences indicated that SY095T was closely related to Crassaminicella profunda Ra1766HT (95.8 % 16S rRNA gene sequence identity). SY095T exhibited 78.1 % average nucleotide identity (ANI) to C. profunda Ra1766HT. The in silico DNA–DNA hybridization (DDH) value indicated that SY095T shared 22.7 % DNA relatedness with C. profunda Ra1766HT. On the basis of its phenotypic, genotypic and phylogenetic characteristics, SY095T is suggested to represent a novel species of the genus Crassaminicella , for which the name Crassaminicella thermophila sp. nov. is proposed. The type strain is SY095T (=JCM 34213=MCCC 1K04191). An emended description of the genus Crassaminicella is also proposed.

Periodic deep‐sea hydrothermal vent activities observed by hydrophones at Mariana, Okinawa, and Mid‐Atlantic Ridge

1996 ◽  
Vol 100 (4) ◽  
pp. 2639-2639
Author(s):  
Kasahara Junzo ◽  
Sato Toshinori ◽  
Nishizawa Azusa ◽  
Fujioka Kantaro
Keyword(s):  
Deep Sea ◽  
Hydrothermal Vent ◽  
Mid Atlantic Ridge
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