scholarly journals The Sugar Porter gene family of Piriformospora indica: Nomenclature, Transcript Profiling and Characterization

2021 ◽  
Author(s):  
Sumit Raj ◽  
Manoj Kumar ◽  
Alok Kumar Singh ◽  
Meenakshi Dua ◽  
Atul Kumar Johri
Keyword(s):  
Phylogenetic Analysis ◽  
Axenic Culture ◽  
Phosphate Starvation ◽  
Functional Complementation ◽  
Piriformospora Indica ◽  
Null Mutant ◽  
Protein Length ◽  
Hexose Transporters ◽  
Systematic Nomenclature ◽  
Survival And Growth

AbstractPiriformospora indica is one of the prominent mutualistic root endophyte known to overcome phosphate and nitrogen limitation in a wide variety of plant species, reciprocally takes up carbohydrates for its survival and growth. A total of nineteen potential hexose transporters have been identified from P. indica genome, that may contributes to its potential of carbohydrate assimilation from host plant. Phylogenetic analysis assembles it in 10 groups within 3 clusters. To ease the study, systematic nomenclature were provided to 19 putative hexose transporters as “PiST1-PiST19” in accordance to their appearance on the supercontigs genome sequence of P. indica. The protein length ranges from 487 to 608 amino acids. Out of 19 putative hexose transporters, 9 have been predicted to contain 12 transmembrane domains (PiST1, PiST2, PiST5, PiST6, PiST9, PiST10, PiST11, PiST12 and PiST17), along with MFS family and Sugar porter subfamily motif. Therefore, transcripts were detected for these 9 genes. During colonization, three P. indica genes PiST1, PiST5 and PiST9 have shown induction as compared to axenic culture. Similarly during phosphate starvation, revealed PiST12 to be strongly enhanced. Carbon starvation study in liquid axenic culture resulted in induction of 4 genes, PiST6, PiST9, PiST12 and PiST17. We found co-relation in the expression pattern of PiPT and PiST12 during phosphate starvation. In silico analysis revealed the presence of functional conserved fucose permease (FucP) domain, involved in fructose transport. Phylogenetic analysis revealed that PiST12 groups closely with basidiomycetes hexose transporters. Further, functional complementation of Δhxt null mutant revealed, PiST12 is able to complement growth on fructose and galactose but negligible on glucose.

Evidence for two recA genes mediating DNA repair in Bacillus megaterium

Microbiology ◽  
2005 ◽  
Vol 151 (3) ◽  
pp. 775-787 ◽  
Author(s):  
Hannes Nahrstedt ◽  
Christine Schröder ◽  
Friedhelm Meinhardt
Keyword(s):  
Escherichia Coli ◽  
Dna Repair ◽  
Mitomycin C ◽  
Bacillus Megaterium ◽  
Functional Complementation ◽  
Homologous Gene ◽  
Gene Products ◽  
Null Mutant ◽  
Promoter Regions ◽  
Increased Sensitivity

Isolation and subsequent knockout of a recA-homologous gene in Bacillus megaterium DSM 319 resulted in a mutant displaying increased sensitivity to mitomycin C. However, this mutant did not exhibit UV hypersensitivity, a finding which eventually led to identification of a second functional recA gene. Evidence for recA duplicates was also obtained for two other B. megaterium strains. In agreement with potential DinR boxes located within their promoter regions, expression of both genes (recA1 and recA2) was found to be damage-inducible. Transcription from the recA2 promoter was significantly higher than that of recA1. Since a recA2 knockout could not be achieved, functional complementation studies were performed in Escherichia coli. Heterologous expression in a RecA null mutant resulted in increased survival after UV irradiation and mitomycin C treatment, proving both recA gene products to be functional in DNA repair. Thus, there is evidence for an SOS-like pathway in B. megaterium that differs from that of Bacillus subtilis.

scholarly journals Cloning and characterization of the phosphoglucomutase of Trypanosoma cruzi and functional complementation of a Saccharomyces cerevisiae PGM null mutant

Glycobiology ◽  
2005 ◽  
Vol 15 (12) ◽  
pp. 1359-1367 ◽  
Author(s):  
Luciana L. Penha ◽  
Lucia Mendonça-Previato ◽  
Jose O. Previato ◽  
Julio Scharfstein ◽  
Norton Heise ◽  
...  
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Trypanosoma Cruzi ◽  
Functional Complementation ◽  
Null Mutant

scholarly journals flhDC, the Flagellar Master Operon ofXenorhabdus nematophilus: Requirement for Motility, Lipolysis, Extracellular Hemolysis, and Full Virulence in Insects

2000 ◽  
Vol 182 (1) ◽  
pp. 107-115 ◽  
Author(s):  
Alain Givaudan ◽  
Anne Lanois
Keyword(s):  
Wild Type Strain ◽  
Phase Variation ◽  
Functional Complementation ◽  
Null Mutant ◽  
Wild Type ◽  
Virulence Phenotype ◽  
The Family ◽  
Flagellar Regulon ◽  
Swarming Behavior

ABSTRACT Xenorhabdus is a major insect pathogen symbiotically associated with nematodes of the family Steinernematidae. This motile bacterium displays swarming behavior on suitable media, but a spontaneous loss of motility is observed as part of a phenomenon designated phase variation which involves the loss of stationary-phase products active as antibiotics and potential virulence factors. To investigate the role of one of the transcriptional activators of flagellar genes, FlhDC, in motility and virulence, theXenorhabdus nematophilus flhDC locus was identified by functional complementation of an Escherichia coli flhD null mutant and DNA sequencing. Construction of X. nematophilus flhD null mutants confirmed that the flhDC operon controls flagellin expression but also revealed that lipolytic and extracellular hemolysin activity is flhDC dependent. We also showed that the flhD null mutant displayed a slightly attenuated virulence phenotype in Spodoptera littoraliscompared to that of the wild-type strain. Thus, these data indicated that motility, lipase, hemolysin, or unknown functions controlled by the flhDC operon are involved in the infectious process in insects. Our investigation expands the view of the flagellar regulon as a checkpoint coupled to a major network involving bacterial physiological aspects as well as motility.

Axenic Culture of Symbiotic Fungus Piriformospora indica

2008 ◽  
pp. 593-613 ◽  
Author(s):  
Giang Huong Pham ◽  
Rina Kumari ◽  
Anjana Singh ◽  
Rajani Malla ◽  
Ram Prasad ◽  
...  
Keyword(s):  
Axenic Culture ◽  
Piriformospora Indica ◽  
Symbiotic Fungus

scholarly journals Galactose Starvation in a Bloodstream Form Trypanosoma brucei UDP-Glucose 4′-Epimerase Conditional Null Mutant

2006 ◽  
Vol 5 (11) ◽  
pp. 1906-1913 ◽  
Author(s):  
Michael D. Urbaniak ◽  
Daniel C. Turnock ◽  
Michael A. J. Ferguson
Keyword(s):  
Trypanosoma Brucei ◽  
Bloodstream Form ◽  
Surface Glycoprotein ◽  
Spectrometric Analysis ◽  
Flagellar Pocket ◽  
Null Mutant ◽  
Galactose Metabolism ◽  
Glycosylphosphatidylinositol Anchor ◽  
Hexose Transporters ◽  
Endosomal System

ABSTRACT Galactose metabolism is essential for the survival of Trypanosoma brucei, the etiological agent of African sleeping sickness. T. brucei hexose transporters are unable to transport galactose, which is instead obtained through the epimerization of UDP-glucose to UDP-galactose catalyzed by UDP-glucose 4′-epimerase (galE). Here, we have characterized the phenotype of a bloodstream form T. brucei galE conditional null mutant under nonpermissive conditions that induced galactose starvation. Cellular levels of UDP-galactose dropped rapidly upon induction of galactose starvation, reaching undetectable levels after 72 h. Analysis of extracted glycoproteins by ricin and tomato lectin blotting showed that terminal β-d-galactose was virtually eliminated and poly-N-acetyllactosamine structures were substantially reduced. Mass spectrometric analysis of variant surface glycoprotein confirmed complete loss of galactose from the glycosylphosphatidylinositol anchor. After 96 h, cell division ceased, and electron microscopy revealed that the cells had adopted a morphologically distinct stumpy-like form, concurrent with the appearance of aberrant vesicles close to the flagellar pocket. These data demonstrate that the UDP-glucose 4′-epimerase is essential for the production of UDP-galactose required for galactosylation of glycoproteins and that galactosylation of one or more glycoproteins, most likely in the lysosomal/endosomal system, is essential for the survival of bloodstream form T. brucei.

Morphological, histological and molecular characterization of Myxidium cf. rhodei infecting the kidney of Rutilus rutilus

2020 ◽  
Vol 141 ◽  
pp. 39-46
Author(s):  
MD Dorjievna Batueva ◽  
X Pan ◽  
J Zhang ◽  
X Liu ◽  
W Wei ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Molecular Characterization ◽  
Rutilus Rutilus ◽  
Longitudinal Axis ◽  
Suture Line ◽  
Present Species ◽  
Supplementary Data

In the present study, we provide supplementary data for Myxidium cf. rhodei Léger, 1905 based on morphological, histological and molecular characterization. M. cf. rhodei was observed in the kidneys of 918 out of 942 (97%) roach Rutilus rutilus (Linnaeus, 1758). Myxospores of M. cf. rhodei were fusiform with pointed ends, measuring 12.7 ± 0.1 SD (11.8-13.4) µm in length and 4.6 ± 0.1 (3.8-5.4) µm in width. Two similar pear-shaped polar capsules were positioned at either ends of the longitudinal axis of the myxospore: each of these capsules measured 4.0 ± 0.1 (3.1-4.7) µm in length and 2.8 ± 0.1 (2.0-4.0) µm in width. Polar filaments were coiled into 4 to 5 turns. Approximately 18-20 longitudinal straight ridges were observed on the myxospore surface. The suture line was straight and distinctive, running near the middle of the valves. Histologically, the plasmodia of the present species were found in the Bowman’s capsules, and rarely in the interstitium of the host. Phylogenetic analysis revealed that M. cf. rhodei was sister to M. anatidum in the Myxidium clade including most Myxidium species from freshwater hosts.

Coral husbandry for ocean futures: leveraging abiotic factors to increase survivorship, growth, and resilience in juvenile Montipora capitata

2021 ◽  
Vol 657 ◽  
pp. 123-133
Author(s):  
JR Hancock ◽  
AR Barrows ◽  
TC Roome ◽  
AS Huffmyer ◽  
SB Matsuda ◽  
...  
Keyword(s):  
Abiotic Factors ◽  
Larval Rearing ◽  
Abiotic Conditions ◽  
Montipora Capitata ◽  
Reef Restoration ◽  
Juvenile Corals ◽  
Bleaching Response ◽  
The Face ◽  
Survival And Growth ◽  
Global And Local

Reef restoration via direct outplanting of sexually propagated juvenile corals is a key strategy in preserving coral reef ecosystem function in the face of global and local stressors (e.g. ocean warming). To advance our capacity to scale and maximize the efficiency of restoration initiatives, we examined how abiotic conditions (i.e. larval rearing temperature, substrate condition, light intensity, and flow rate) interact to enhance post-settlement survival and growth of sexually propagated juvenile Montipora capitata. Larvae were reared at 3 temperatures (high: 28.9°C, ambient: 27.2°C, low: 24.5°C) for 72 h during larval development, and were subsequently settled on aragonite plugs conditioned in seawater (1 or 10 wk) and raised in different light and flow regimes. These juvenile corals underwent a natural bleaching event in Kāne‘ohe Bay, O‘ahu, Hawai‘i (USA), in summer 2019, allowing us to opportunistically measure bleaching response in addition to survivorship and growth. This study demonstrates how leveraging light and flow can increase the survivorship and growth of juvenile M. capitata. In contrast, larval preconditioning and substrate conditioning had little overall effect on survivorship, growth, or bleaching response. Importantly, there was no optimal combination of abiotic conditions that maximized survival and growth in addition to bleaching tolerances. This study highlights the ability to tailor sexual reproduction for specific restoration goals by addressing knowledge gaps and incorporating practices that could improve resilience in propagated stocks.

Mechanisms leading to recruitment inhibition of giant kelp Macrocystis pyrifera by an understory alga

2021 ◽  
Vol 657 ◽  
pp. 59-71
Author(s):  
BA Beckley ◽  
MS Edwards
Keyword(s):  
Field Experiments ◽  
Local Community ◽  
Kelp Forest ◽  
Macrocystis Pyrifera ◽  
Forest Recovery ◽  
Kelp Forests ◽  
Giant Kelp ◽  
Combined Effects ◽  
Life Stages ◽  
Survival And Growth

The forest-forming giant kelp Macrocystis pyrifera and the communities it supports have been decreasing across their native ranges in many parts of the world. The sudden removal of giant kelp canopies by storms increases space and light for the colonization by understory macroalgae, such as Desmarestia herbacea, which can inhibit M. pyrifera recovery and alter local community composition. Understanding the mechanisms by which algae such as D. herbacea interact with M. pyrifera can provide insight into patterns of kelp forest recovery following these disturbances and can aid in predicting future community structure. This study experimentally tested the independent and combined effects of two likely competitive mechanisms by which D. herbacea might inhibit recovery of M. pyrifera in the Point Loma kelp forest in San Diego, California (USA). Specifically, we conducted field experiments to study the individual and combined effects of shade and scour by D. herbacea on the survival of M. pyrifera microscopic life stages, and the recruitment, survival, and growth of its young sporophytes. Our results show that scour had the strongest negative effect on the survival of M. pyrifera microscopic life stages and recruitment, but shade and scour both adversely affected survival and growth of these sporophytes as they grew larger. Canopy-removing storms are increasing in frequency and intensity, and this change could facilitate the rise of understory species, like D. herbacea, which might alter community succession and recovery of kelp forests.

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