scholarly journals A robust, semi-automated approach for counting cementum increments imaged with X-ray computed tomography

2021 ◽  
Author(s):  
Elis Newham ◽  
Pamela G Gill ◽  
Kate Robson Brown ◽  
Neil J Gostling ◽  
Ian J Corfe ◽  
...  

Cementum, the tissue attaching mammal tooth roots to the periodontal ligament, grows appositionally throughout life, displaying a series of circum-annual incremental features. These have been studied for decades as a direct record of chronological lifespan. The majority of previous studies on cementum have used traditional thin-section histological methods to image and analyse increments. However, several caveats have been raised in terms of studying cementum increments in thin-sections. Firstly, the limited number of thin-sections and the two-dimensional perspective they impart provide an incomplete interpretation of cementum structure, and studies often struggle or fail to overcome complications in increment patterns that complicate or inhibit increment counting. Increments have been repeatedly shown to both split and coalesce, creating accessory increments that can bias increment counts. Secondly, identification and counting of cementum increments using human vision is subjective, and it has led to inaccurate readings in several experiments studying individuals of known age. Here, we have attempted to optimise a recently introduced imaging modality for cementum imaging; X-ray propagation-based phase-contrast imaging (PPCI). X-ray PPCI was performed for a sample of rhesus macaque ( Macaca mulatta ) lower first molars (n=10) from a laboratory population of known age. A new method for semi-automatic increment counting was then integrated into a purpose-built software package for studying cementum increments. Comparison with data from conventional cementochronology, based on histological examination of tissue sections, confirmed that X-ray PPCI reliably records cementum increments. Validation of the increment counting algorithm suggests that it is robust and provides accurate estimates of increment counts. In summary, we show that our new increment counting method has the potential to overcome caveats of conventional cementochronology approaches, when used to analyse 3D images provided by X-ray PPCI.

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3416 ◽  
Author(s):  
Zartasha Mustansar ◽  
Samuel A. McDonald ◽  
William Irvin Sellers ◽  
Phillip Lars Manning ◽  
Tristan Lowe ◽  
...  

This paper uses X-ray computed tomography to track the mechanical response of a vertebrate (Barnacle goose) long bone subjected to an axial compressive load, which is increased gradually until failure. A loading rig was mounted in an X-ray computed tomography system so that a time-lapse sequence of three-dimensional (3D) images of the bone’s internal (cancellous or trabecular) structure could be recorded during loading. Five distinct types of deformation mechanism were observed in the cancellous part of the bone. These were (i) cracking, (ii) thinning (iii) tearing of cell walls and struts, (iv) notch formation, (v) necking and (vi) buckling. The results highlight that bone experiences brittle (notch formation and cracking), ductile (thinning, tearing and necking) and elastic (buckling) modes of deformation. Progressive deformation, leading to cracking was studied in detail using digital image correlation. The resulting strain maps were consistent with mechanisms occurring at a finer-length scale. This paper is the first to capture time-lapse 3D images of a whole long bone subject to loading until failure. The results serve as a unique reference for researchers interested in how bone responds to loading. For those using computer modelling, the study not only provides qualitative information for verification and validation of their simulations but also highlights that constitutive models for bone need to take into account a number of different deformation mechanisms.


2015 ◽  
Vol 833 ◽  
pp. 154-157
Author(s):  
Jiang Ying Meng ◽  
Min An Chen ◽  
Shuai Liu ◽  
Fu Cheng Zhang ◽  
Li He Qian

The present paper addresses a 3D investigation of a complicated fatigue crack profile and crack growth behavior in cast Hadfield high manganese steel by in-situ X-ray computed tomography (CT) experiments. In-situ loading experiments were performed on fatigue pre-cracked samples at the X-ray beamline BL13W1 of Shanghai synchrotron radiation facility in China, and high-resolution phase contrast imaging technique was applied to obtain the 3D images. Based on the rendered 3D images at varied loading levels, various crack features and the interactions of the fatigue crack with casting pores were identified and analyzed.


2010 ◽  
Vol 39 (3) ◽  
pp. 184-190 ◽  
Author(s):  
Brian M. Patterson ◽  
John Campbell ◽  
George J. Havrilla

2013 ◽  
Vol 2013 ◽  
pp. 1-9 ◽  
Author(s):  
Ryan C. Gessner ◽  
C. Brandon Frederick ◽  
F. Stuart Foster ◽  
Paul A. Dayton

The purpose of this paper is to provide the biomedical imaging community with details of a new high resolution contrast imaging approach referred to as “acoustic angiography.” Through the use of dual-frequency ultrasound transducer technology, images acquired with this approach possess both high resolution and a high contrast-to-tissue ratio, which enables the visualization of microvascular architecture without significant contribution from background tissues. Additionally, volumetric vessel-tissue integration can be visualized by using b-mode overlays acquired with the same probe. We present a brief technical overview of how the images are acquired, followed by several examples of images of both healthy and diseased tissue volumes. 3D images from alternate modalities often used in preclinical imaging, contrast-enhanced micro-CT and photoacoustics, are also included to provide a perspective on how acoustic angiography has qualitatively similar capabilities to these other techniques. These preliminary images provide visually compelling evidence to suggest that acoustic angiography may serve as a powerful new tool in preclinical and future clinical imaging.


2017 ◽  
Vol 9 (3-2) ◽  
Author(s):  
Muhammad Hanif Ramlee ◽  
Jasmy Yunus ◽  
Eko Supriyanto

X-ray computed tomography (called CT) scanner is a powerful and widely used medical imaging modality in the hospital. The CT machine is very expensive and it can produce dangerous radiation when a person operates the machine. This makes it difficult for biomedical engineers and radiographer students to learn its working principles. In order to overcome this problem, a computer based CT scanner trainer system has been developed. The system is implemented using National Instrument’s Laboratory Virtual Instrumentation Engineering Workbench (LabVIEW). At the beginning, it was started with the studying of existing CT scan machine. After gathering information, development process continued to develop generator component, x-ray tube subsystem, detector subsystem, imaging subsystem, and finally is reconstruction subsystem. The trainer system that has been developed is able to be used to train students on how to use CT scanner especially to get high quality images with lowest possible radiation. This will help biomedical engineers and radiographer students to have a better understanding of CT scanner in term of its working principle and to prevent radiation hazard during the learning process.


2020 ◽  
Vol 69 (4) ◽  
pp. 1170-1178 ◽  
Author(s):  
Dominika Kalasova ◽  
Tomas Zikmund ◽  
Ladislav Pina ◽  
Yoshihiro Takeda ◽  
Martin Horvath ◽  
...  

2015 ◽  
Vol 2015 ◽  
pp. 1-8 ◽  
Author(s):  
Ahmad Helman Hamdani

The Pliocene Sajau coals of the Berau Basin area have a moderately to highly developed cleat system. Mostly the cleat fractures are well developed in both bright and dull bands, and these cleats are generally inclined or perpendicular to the bedding planes of the seam. The presence of cleat networks/fractures in coal seam is the important point in coalbed methane prospect. The 3D X-ray computed tomography (CT) technique was performed to identify cleats characteristics in the Sajau coal seams, such as the direction of coal cleats, geometry of cleat, and cleats mineralization. By CT scan imaging technique two different types of natural fractures observed in Sajau coals have been identified, that is, face cleats and butt cleats. This technique also identified the direction of face cleats and butt cleats as shown in the resulting 3D images. Based on the images, face cleats show a NNE-SSW direction while butt cleats have a NW-SE direction. The crosscutting relationship indicated that NNE-SSW cleats were formed earlier than NW-SE cleats. The procedure also identified the types of minerals that filled the cleats apertures. Based on their density, the minerals are categorized as follows: very high density minerals (pyrite), high density minerals (anastase), and low density minerals (kaolinite, calcite) were identified filling the cleats aperture.


2020 ◽  
Vol 27 (3) ◽  
pp. 730-736 ◽  
Author(s):  
Mirko Holler ◽  
Michal Odstrčil ◽  
Manuel Guizar-Sicairos ◽  
Maxime Lebugle ◽  
Ulrich Frommherz ◽  
...  

Across all branches of science, medicine and engineering, high-resolution microscopy is required to understand functionality. Although optical methods have been developed to `defeat' the diffraction limit and produce 3D images, and electrons have proven ever more useful in creating pictures of small objects or thin sections, so far there is no substitute for X-ray microscopy in providing multiscale 3D images of objects with a single instrument and minimal labeling and preparation. A powerful technique proven to continuously access length scales from 10 nm to 10 µm is ptychographic X-ray computed tomography, which, on account of the orthogonality of the tomographic rotation axis to the illuminating beam, still has the limitation of necessitating pillar-shaped samples of small (ca 10 µm) diameter. Large-area planar samples are common in science and engineering, and it is therefore highly desirable to create an X-ray microscope that can examine such samples without the extraction of pillars. Computed laminography, where the axis of rotation is not perpendicular to the illumination direction, solves this problem. This entailed the development of a new instrument, LamNI, dedicated to high-resolution 3D scanning X-ray microscopy via hard X-ray ptychographic laminography. Scanning precision is achieved by a dedicated interferometry scheme and the instrument covers a scan range of 12 mm × 12 mm with a position stability of 2 nm and positioning errors below 5 nm. A new feature of LamNI is a pair of counter-rotating stages carrying the sample and interferometric mirrors, respectively.


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