scholarly journals Above- and below-ground biodiversity responses to the prolonged flood pulse in central-western Amazonia, Brazil

2021 ◽  
Author(s):  
Yennie K. Bredin ◽  
Laura L. Hess ◽  
Andressa B. Scabin ◽  
Micah Dunthorn ◽  
Torbjørn Haugaasen ◽  
...  

AbstractAmazonia encompasses forests that grow in areas that are periodically inundated by overflowing rivers. The inundation depth and duration vary according to the slope of the terrain, creating a flooding gradient. This gradient directly affects the biota, but the effect on soil organisms remains elusive. Here, we use DNA metabarcoding to estimate prokaryote and eukaryote diversity from soil and litter samples in a seasonally flooded forest and its adjacent unflooded forest in central-western Amazonia using 16S and 18S gene sequences, respectively. We characterize the below-ground diversity and community composition based on Amplicon Sequence Variants (ASVs) along the flooding gradient. We test for the relationship of soil biota with the flooding gradient, soil properties and above-ground woody plant diversity. The flooding gradient did not explain below-ground biodiversity. Nor was the below-ground diversity explained by the above-ground woody plant diversity. However, we found taxonomic groups not previously reported in Amazonian seasonally flooded forests. Also, the flooding gradient and woody plant diversity did, in part, explain the community composition of soil bacteria. Although the effects of the flooding gradient, soil properties and above-ground woody plant diversity is hard to quantify, our results thus indicate that flood stress could influence below-ground bacterial community composition.

2019 ◽  
Vol 11 (21) ◽  
pp. 6020 ◽  
Author(s):  
Karolina Furtak ◽  
Jarosław Grządziel ◽  
Anna Gałązka ◽  
Jacek Niedźwiecki

The authors would like to make the following correction about the published paper [...]


2020 ◽  
Vol 20 (3) ◽  
Author(s):  
Eva Kinnebrew ◽  
Lena K. Champlin ◽  
Gillian L. Galford ◽  
Christopher Neill

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Zheng Zhao ◽  
Changbin Chu ◽  
Deping Zhou ◽  
Qingfeng Wang ◽  
Shuhang Wu ◽  
...  

AbstractThe high productivity and efficient nutrient utilization in rice–fish integrated farming system are well reported. However, the characteristics of soil bacterial communities and their relationship with soil nutrient availability in rice–fish field remain unclear. In this study, we selected three paddy fields, including a rice monoculture field and two rice–fish fields with different planting years, to investigate the soil bacterial community composition with Illumina MiSeq sequencing technology. The results indicated that the soil properties were significantly different among different rice farming systems. The soil bacterial community composition in the rice–fish field was significantly different from that in the rice monoculture field. Five of the top 15 phyla were observed with significant differences and Nitrospirae was the most significant one. However, no taxa observed with significance between the rice planting area and aquaculture area no matter in the 1st or 5th year of rice–fish field. RDA analysis showed that the soil bacterial community differentiation in the 5th year of rice–fish field was positively correlated with soil properties, such as AN and OM contents, EC and pH value. Although the rice yields in rice–fish field decreased, the net economic benefit of the rice–fish system enhanced obviously due to the high value of aquaculture animals.


Agronomy ◽  
2020 ◽  
Vol 10 (5) ◽  
pp. 746
Author(s):  
Shuxiu Fan ◽  
Jiacheng Zuo ◽  
Hangyu Dong

Changes in soil physicochemical properties and bacterial community composition were investigated six years after biochar amendment at 0%, 4%, 8% and 12% (w/w), which were coded as C0, C1, C2 and C3, respectively. Results showed that some soil characteristics were sustainable, as they were still affected by biochar addition after six years. Compared to the control, biochar-treated soils had higher pH, total carbon (TC), C/N, total nitrogen (TN), available phosphorus (AP) and available potassium (AK). Soil pH, C/N and the content of TC, TN and AK all increased along with the increase of biochar dosage. The results of Illumina MiSeq sequencing demonstrated that biochar enhanced soil bacteria diversity and modified the community composition over time. The relative abundance of Nitrospirae and Verrucomicrobia phylum increased but that of Acidobacteria phylum decreased significantly in biochar amended soils. The addition of biochar also enriched some bacterial genera, such as uncultured Nitrosomonadace, uncultured Gemmatimonadac, uncultured Nitrospiraceae and Magnetovibrio. In particular, the relative abundance of uncultured Nitrospiraceae was enhanced by 16.9%, 42.8% and 73.6% in C1, C2 and C3, respectively, compared to C0. Biochar has a potential role in enhancing the abundance of bacteria involved in N cycling. Soil pH, TC, TN, TK and AK, were closely related to alterations in the composition of the soil bacterial community. Meanwhile, these soil properties were significantly influenced by biochar amendment, which indicates that biochar affected the soil microbial community indirectly by altering the soil characteristics in the long term.


Forests ◽  
2021 ◽  
Vol 12 (5) ◽  
pp. 562
Author(s):  
Wanlong Sun ◽  
Xuehua Liu ◽  
Zhaoxue Tian ◽  
Xiaoming Shao

Afforestation with different tree species formed different vegetation patterns, and altered soil properties and the composition and diversity of the soil bacterial community. In order to analyze the difference characteristics of vegetation, soil and bacterial community after 20 years’ restoration of different tree species, we investigated changes in vegetation (tree, shrubs, and herbs), soil properties and the soil bacterial community composition in the topsoil (0–10 cm) following afforestation of P. asperata Mast. and L. kaempferi (Lamb.) Carr.on the southern slope of the Qinling mountains. The results showed that, within a 20-year recovery period, the restorative effect of L. kaempferi was better than that of P. asperata, for alpha diversity and biomass of vegetation, composition and diversity of soil bacterial community were all preferable under nearly same environmental conditions if just taking these indices into consideration. Additionally, biodiversity of L. kaempfer was much richer than that of P. asperata. Our observations suggest that soil physicochemical properties, soil bacterial community composition and diversity following afforestation were mainly affected by tree species. The results could explain our hypothesis to some extent that a planted forest with quick growth speed and sparse canopy has higher biomass productivity and alpha diversity of ecosystem.


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