Protein crystallography in a vapour stream: data collection, reaction initiation and intermediate trapping in naked hydrated protein crystals

2002 ◽  
Vol 35 (1) ◽  
pp. 113-116 ◽  
Author(s):  
Tove Sjögren ◽  
Gunilla Carlsson ◽  
Gisela Larsson ◽  
Andras Hajdu ◽  
Christer Andersson ◽  
...  

A procedure is presented for experiments on naked unfrozen protein crystals with the crystal mounted in a conventional cryo-loop and surrounded by a stream of a wet gas. The composition and temperature of the vapour stream can be adjusted to keep the crystal without deterioration for many hours. The arrangement allows (i) for rapidly testing crystals for diffraction before freezing, (ii) for data collection between 268–303 K with greatly reduced background, (iii) for the controlled drying or wetting of crystals, (iv) for the anaerobic manipulation of protein crystals, and (v) for the introduction of gaseous or volatile ingredients and reactants into the crystal. The technique offers new experimental possibilities,e.g.in time-resolved structural studies. Reaction initiation in many protein crystals can be achieved by changing the composition of the vapour stream to create a new chemical environment around the crystal and to introduce substrates/reactants either in the gas phase or as microdroplets. Spectral changes during such reactions can be monitored by single-crystal microspectrophotometry, and, once an intermediate has been detected at high concentrations, the crystal can be frozen,e.g.by rapidly switching the warm vapour stream to a cryogenically cooled helium or nitrogen jet. Representative examples are presented in this paper.

Sensors ◽  
2020 ◽  
Vol 20 (21) ◽  
pp. 6115
Author(s):  
Katjana Ehrlich ◽  
Tushar R. Choudhary ◽  
Muhammed Ucuncu ◽  
Alicia Megia-Fernandez ◽  
Kerrianne Harrington ◽  
...  

Numerous optodes, with fluorophores as the chemical sensing element and optical fibres for light delivery and collection, have been fabricated for minimally invasive endoscopic measurements of key physiological parameters such as pH. These flexible miniaturised optodes have typically attempted to maximize signal-to-noise through the application of high concentrations of fluorophores. We show that high-density attachment of carboxyfluorescein onto silica microspheres, the sensing elements, results in fluorescence energy transfer, manifesting as reduced fluorescence intensity and lifetime in addition to spectral changes. We demonstrate that the change in fluorescence intensity of carboxyfluorescein with pH in this “high-density” regime is opposite to that normally observed, with complex variations in fluorescent lifetime across the emission spectra of coupled fluorophores. Improved understanding of such highly loaded sensor beads is important because it leads to large increases in photostability and will aid the development of compact fibre probes, suitable for clinical applications. The time-resolved spectral measurement techniques presented here can be further applied to similar studies of other optodes.


2021 ◽  
Vol 768 ◽  
pp. 138403
Author(s):  
Kendall D. Hughey ◽  
Russell G. Tonkyn ◽  
Warren W. Harper ◽  
Valerie L. Young ◽  
Tanya L. Myers ◽  
...  

2019 ◽  
Author(s):  
Yunjiang Zhang ◽  
Olivier Favez ◽  
Jean-Eudes Petit ◽  
Francesco Canonaco ◽  
Francois Truong ◽  
...  

Abstract. Organic aerosol (OA) particles are recognized as key factors influencing air quality and climate change. However, highly-time resolved year-round characterizations of their composition and sources in ambient air are still very limited due to challenging continuous observations. Here, we present an analysis of long-term variability of submicron OA using the combination of Aerosol Chemical Speciation Monitor (ACSM) and multi-wavelength aethalometer from November 2011 to March 2018 at a background site of the Paris region (France). Source apportionment of OA was achieved via partially constrained positive matrix factorization (PMF) using the multilinear engine (ME-2). Two primary OA (POA) and two oxygenated OA (OOA) factors were identified and quantified over the entire studied period. POA factors were designated as hydrocarbon-like OA (HOA) and biomass burning OA (BBOA). The latter factor presented a significant seasonality with higher concentrations in winter with significant monthly contributions to OA (18–33 %) due to enhanced residential wood burning emissions. HOA mainly originated from traffic emissions but was also influenced by biomass burning in cold periods. OOA factors were distinguished between their less- and more-oxidized fractions (LO-OOA and MO-OOA, respectively). These factors presented distinct seasonal patterns, associated with different atmospheric formation pathways. A pronounced increase of LO-OOA concentrations and contributions (50–66 %) was observed in summer, which may be mainly explained by secondary OA (SOA) formation processes involving biogenic gaseous precursors. Conversely high concentrations and OA contributions (32–62 %) of MO-OOA during winter and spring seasons were partly associated with anthropogenic emissions and/or long-range transport from northeastern Europe. The contribution of the different OA factors as a function of OA mass loading highlighted the dominant roles of POA during pollution episodes in fall and winter, and of SOA for highest springtime and summertime OA concentrations. Finally, long-term trend analyses indicated a decreasing feature (of about 200 ng m−3 yr−1) for MO-OOA, very limited or insignificant decreasing trends for primary anthropogenic carbonaceous aerosols (BBOA and HOA, along with the fossil fuel and biomass burning black carbon components), and no trend for LO-OOA over the 6+-year investigated period.


1996 ◽  
Vol 250 (1) ◽  
pp. 111-119 ◽  
Author(s):  
R. Becerra ◽  
S.E. Boganov ◽  
M.P. Egorov ◽  
V.Ya. Lee ◽  
O.M. Nefedov ◽  
...  

1999 ◽  
Vol 68 (3) ◽  
pp. 171-181 ◽  
Author(s):  
Evgenii N Chesnokov ◽  
Viktor N Panfilov

1992 ◽  
Vol 96 (19) ◽  
pp. 7650-7656 ◽  
Author(s):  
Youfeng Zheng ◽  
Wenhua Wang ◽  
Jingu Lin ◽  
Yongbo She ◽  
Kejian Fu

2016 ◽  
Vol 16 (11) ◽  
pp. 7357-7371 ◽  
Author(s):  
Mi Tian ◽  
Huanbo Wang ◽  
Yang Chen ◽  
Fumo Yang ◽  
Xiaohua Zhang ◽  
...  

Abstract. Extremely severe haze weather events occurred in many cities in China, especially in the east part of the country, in January 2013. Comprehensive measurements including hourly concentrations of PM2.5 and its major chemical components (water-soluble inorganic ions, organic carbon (OC), and elemental carbon (EC)) and related gas-phase precursors were conducted via an online monitoring system in Suzhou, a medium-sized city in Jiangsu province, just east of Shanghai. PM2.5 (particulate matter with an aerodynamic diameter of 2.5 µm or less) frequently exceeded 150 µg m−3 on hazy days, with the maximum reaching 324 µg m−3 on 14 January 2013. Unfavorable weather conditions (high relative humidity (RH), and low rainfall, wind speed, and atmospheric pressure) were conducive to haze formation. High concentrations of secondary aerosol species (including SO42−, NO3−, NH4+, and SOC) and gaseous precursors were observed during the first two haze events, while elevated primary carbonaceous species emissions were found during the third haze period, pointing to different haze formation mechanisms. Organic matter (OM), (NH4)2SO4, and NH4NO3 were found to be the major contributors to visibility impairment. High concentrations of sulfate and nitrate might be explained by homogeneous gas-phase reactions under low RH conditions and by heterogeneous processes under relatively high RH conditions. Analysis of air mass trajectory clustering and potential source contribution function showed that aerosol pollution in the studied areas was mainly caused by local activities and surrounding sources transported from nearby cities.


2009 ◽  
Vol 9 (5) ◽  
pp. 1711-1722 ◽  
Author(s):  
R. K. Pathak ◽  
W. S. Wu ◽  
T. Wang

Abstract. Strong atmospheric photochemistry in summer can produce a significant amount of secondary aerosols, which may have a large impact on regional air quality and visibility. In the study reported herein, we analyzed sulfate, nitrate, and ammonium in PM2.5 samples collected using a 24-h filter system at suburban and rural sites near four major cities in China (Beijing, Shanghai, Guangzhou, and Lanzhou). Overall, the PM2.5 mass concentrations were high (with a mean value of 55–68 gμgm−3), which reflects the long-known particulate pollution in China's large urban centers. We observed very high concentrations of sulfate and nitrate at the Beijing and Shanghai sites, and, in particular, abnormally high levels of nitrate (24-h average concentration up to 42 gμgm−3 and contributing up to 25% of the PM2.5 mass) in the ammonium-poor samples. The Beijing and Shanghai aerosols were characterized by high levels of aerosol acidity (~220–390 nmol m−3) and low levels of in-situ pH (−0.77 to −0.52). In these samples, the formation of the observed high concentrations of particulate nitrate cannot be explained by homogeneous gas-phase reaction between ammonia and nitric acid. Examination of the relation of nitrate to relative humidity and aerosol loading suggests that the nitrate was most probably formed via the heterogeneous hydrolysis of N2O5 on the surface of the moist and acidic aerosols in Beijing and Shanghai. In comparison, the samples collected in Lanzhou and Guangzhou were ammonium-rich with low levels of aerosol acidity (~65–70 nmol m−3), and the formation of ammonium nitrate via the homogeneous gas-phase reaction was favored, which is similar to many previous studies. An empirical fit has been derived to relate fine nitrate to aerosol acidity, aerosol water content, aerosol surface area, and the precursor of nitrate for the data from Beijing and Shanghai.


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