Design of an Analog Multi-Neuronal Spike-sequence Detector (MNSD) based on a 180nm CMOS Leaky Integrate & Fire with Latency Neuron

Author(s):  
Sumukh Nitundil ◽  
Gianluca Susi ◽  
Fernando Maestu
2020 ◽  
Vol 2020 (1) ◽  
pp. 290-303
Author(s):  
Kuan Cheok Lei ◽  
Xiaohua Douglas Zhang

Abstract Background The current coronavirus disease 2019 (COVID-19) pandemic, caused by severe acute respiratory syndrome (SARS)-CoV-2, has become the most devastating public health emergency in the 21st century and one of the most influential plagues in history. Studies on the origin of SARS-CoV-2 have generally agreed that the virus probably comes from bat, closely related to a bat CoV named BCoV-RaTG13 taken from horseshoe bat (Rhinolophus affinis), with Malayan pangolin (Manis javanica) being a plausible intermediate host. However, due to the relatively low number of SARS-CoV-2-related strains available in public domain, the evolutionary history remains unclear. Methodology Nine hundred ninety-five coronavirus sequences from NCBI Genbank and GISAID were obtained and multiple sequence alignment was carried out to categorize SARS-CoV-2 related groups. Spike sequences were analyzed using similarity analysis and conservation analyses. Mutation analysis was used to identify variations within receptor-binding domain (RBD) in spike for SARS-CoV-2-related strains. Results We identified a family of SARS-CoV-2-related strains, including the closest relatives, bat CoV RaTG13 and pangolin CoV strains. Sequence similarity analysis and conservation analysis on spike sequence identified that N-terminal domain, RBD and S2 subunit display different degrees of conservation with several coronavirus strains. Mutation analysis on contact sites in SARS-CoV-2 RBD reveals that human-susceptibility probably emerges in pangolin. Conclusion and implication We conclude that the spike sequence of SARS-CoV-2 is the result of multiple recombination events during its transmission from bat to human, and we propose a framework of evolutionary history that resolve the relationship of BCoV-RaTG13 and pangolin coronaviruses with SARS-CoV-2. Lay Summary This study analyses whole-genome and spike sequences of coronavirus from NCBI using phylogenetic and conservation analyses to reconstruct the evolutionary history of severe acute respiratory syndrome (SARS)-CoV-2 and proposes an evolutionary history of spike in the progenitors of SARS-CoV-2 from bat to human through mammal hosts before they recombine into the current form.


2021 ◽  
Vol 15 ◽  
Author(s):  
Gianluca Susi ◽  
Luis F. Antón-Toro ◽  
Fernando Maestú ◽  
Ernesto Pereda ◽  
Claudio Mirasso

The recent “multi-neuronal spike sequence detector” (MNSD) architecture integrates the weight- and delay-adjustment methods by combining heterosynaptic plasticity with the neurocomputational feature spike latency, representing a new opportunity to understand the mechanisms underlying biological learning. Unfortunately, the range of problems to which this topology can be applied is limited because of the low cardinality of the parallel spike trains that it can process, and the lack of a visualization mechanism to understand its internal operation. We present here the nMNSD structure, which is a generalization of the MNSD to any number of inputs. The mathematical framework of the structure is introduced, together with the “trapezoid method,” that is a reduced method to analyze the recognition mechanism operated by the nMNSD in response to a specific input parallel spike train. We apply the nMNSD to a classification problem previously faced with the classical MNSD from the same authors, showing the new possibilities the nMNSD opens, with associated improvement in classification performances. Finally, we benchmark the nMNSD on the classification of static inputs (MNIST database) obtaining state-of-the-art accuracies together with advantageous aspects in terms of time- and energy-efficiency if compared to similar classification methods.


2021 ◽  
Author(s):  
F Javier Ibarrondo ◽  
Christian Hofmann ◽  
Ayub Ali ◽  
Paul Ayoub ◽  
Donald B Kohn ◽  
...  

SARS-CoV-2 continues to evolve in humans. Spike protein mutations increase transmission and potentially evade antibodies raised against the original sequence used in current vaccines. Our evaluation of serum neutralizing activity in both persons soon after SARS-CoV-2 infection (in April 2020 or earlier) or vaccination without prior infection confirmed that common spike mutations can reduce antibody antiviral activity. However, when the persons with prior infection were subsequently vaccinated, their antibodies attained an apparent biologic ceiling of neutralizing potency against all tested variants, equivalent to the original spike sequence. These findings indicate that additional antigenic exposure further improves antibody efficacy against variants.


2003 ◽  
Vol 15 (10) ◽  
pp. 2399-2418 ◽  
Author(s):  
Zhao Songnian ◽  
Xiong Xiaoyun ◽  
Yao Guozheng ◽  
Fu Zhi

Based on synchronized responses of neuronal populations in the visual cortex to external stimuli, we proposed a computational model consisting primarily of a neuronal phase-locked loop (NPLL) and multiscaled operator. The former reveals the function of synchronous oscillations in the visual cortex. Regardless of which of these patterns of the spike trains may be an average firing-rate code, a spike-timing code, or a rate-time code, the NPLL can decode original visual information from neuronal spike trains modulated with patterns of external stimuli, because a voltage-controlled oscillator (VCO), which is included in the NPLL, can precisely track neuronal spike trains and instantaneous variations, that is, VCO can make a copy of an external stimulus pattern. The latter, however, describes multi-scaled properties of visual information processing, but not merely edge and contour detection. In this study, in which we combined NPLL with a multiscaled operator and maximum likelihood estimation, we proved that the model, as a neurodecoder, implements optimum algorithm decoding visual information from neuronal spike trains at the system level. At the same time, the model also obtains increasingly important supports, which come from a series of experimental results of neurobiology on stimulus-specific neuronal oscillations or synchronized responses of the neuronal population in the visual cortex. In addition, the problem of how to describe visual acuity and multiresolution of vision by wavelet transform is also discussed. The results indicate that the model provides a deeper understanding of the role of synchronized responses in decoding visual information.


2020 ◽  
Vol 30 (10) ◽  
pp. 5431-5448
Author(s):  
Yanfang Zuo ◽  
Yanwang Huang ◽  
Dingcheng Wu ◽  
Qingxiu Wang ◽  
Zuoren Wang

Abstract How does the brain selectively process signals from stimuli of different modalities? Coherent oscillations may function in coordinating communication between neuronal populations simultaneously involved in such cognitive behavior. Beta power (12–30 Hz) is implicated in top-down cognitive processes. Here we test the hypothesis that the brain increases encoding and behavioral influence of a target modality by shifting the relationship of neuronal spike phases relative to beta oscillations between primary sensory cortices and higher cortices. We simultaneously recorded neuronal spike and local field potentials in the posterior parietal cortex (PPC) and the primary auditory cortex (A1) when male rats made choices to either auditory or visual stimuli. Neuronal spikes exhibited modality-related phase locking to beta oscillations during stimulus sampling, and the phase shift between neuronal subpopulations demonstrated faster top-down signaling from PPC to A1 neurons when animals attended to auditory rather than visual stimuli. Importantly, complementary to spike timing, spike phase predicted rats’ attended-to target in single trials, which was related to the animals’ performance. Our findings support a candidate mechanism that cortices encode targets from different modalities by shifting neuronal spike phase. This work may extend our understanding of the importance of spike phase as a coding and readout mechanism.


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