Garlic Mapping for Sentinel-2 Time-Series Data Using a Random Forest Classifier

Developing accurate methods for estimating forest structures is essential for efficient forest management. The high spatial and temporal resolution data acquired by CubeSat satellites have desirable characteristics for mapping large-scale forest structural attributes. However, most studies have used a median composite or single image for analyses. The multi-temporal use of CubeSat data may improve prediction accuracy. This study evaluates the capabilities of PlanetScope CubeSat data to estimate canopy height derived from airborne Light Detection and Ranging (LiDAR) by comparing estimates using Sentinel-2 and Landsat 8 data. Random forest (RF) models using a single composite, multi-seasonal composites, and time-series data were investigated at different spatial resolutions of 3, 10, 20, and 30 m. The highest prediction accuracy was obtained by the PlanetScope multi-seasonal composites at 3 m (relative root mean squared error: 51.3%) and Sentinel-2 multi-seasonal composites at the other spatial resolutions (40.5%, 35.2%, and 34.2% for 10, 20, and 30 m, respectively). The results show that RF models using multi-seasonal composites are 1.4% more accurate than those using harmonic metrics from time-series data in the median. PlanetScope is recommended for canopy height mapping at finer spatial resolutions. However, the unique characteristics of PlanetScope data in a spatial and temporal context should be further investigated for operational forest monitoring.

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Improving Medication Regimen Recommendation for Parkinson’s Disease Using Sensor Technology

Sensors ◽

10.3390/s21103553 ◽

2021 ◽

Vol 21 (10) ◽

pp. 3553

Author(s):

Jeremy Watts ◽

Anahita Khojandi ◽

Rama Vasudevan ◽

Fatta B. Nahab ◽

Ritesh A. Ramdhani

Keyword(s):

Parkinson’S Disease ◽

Time Series ◽

Parkinson's Disease ◽

Random Forest ◽

Treatment Planning ◽

Time Series Data ◽

Classification Model ◽

Series Data ◽

Demographic Information ◽

Subjective Data

Parkinson’s disease medication treatment planning is generally based on subjective data obtained through clinical, physician-patient interactions. The Personal KinetiGraph™ (PKG) and similar wearable sensors have shown promise in enabling objective, continuous remote health monitoring for Parkinson’s patients. In this proof-of-concept study, we propose to use objective sensor data from the PKG and apply machine learning to cluster patients based on levodopa regimens and response. The resulting clusters are then used to enhance treatment planning by providing improved initial treatment estimates to supplement a physician’s initial assessment. We apply k-means clustering to a dataset of within-subject Parkinson’s medication changes—clinically assessed by the MDS-Unified Parkinson’s Disease Rating Scale-III (MDS-UPDRS-III) and the PKG sensor for movement staging. A random forest classification model was then used to predict patients’ cluster allocation based on their respective demographic information, MDS-UPDRS-III scores, and PKG time-series data. Clinically relevant clusters were partitioned by levodopa dose, medication administration frequency, and total levodopa equivalent daily dose—with the PKG providing similar symptomatic assessments to physician MDS-UPDRS-III scores. A random forest classifier trained on demographic information, MDS-UPDRS-III scores, and PKG time-series data was able to accurately classify subjects of the two most demographically similar clusters with an accuracy of 86.9%, an F1 score of 90.7%, and an AUC of 0.871. A model that relied solely on demographic information and PKG time-series data provided the next best performance with an accuracy of 83.8%, an F1 score of 88.5%, and an AUC of 0.831, hence further enabling fully remote assessments. These computational methods demonstrate the feasibility of using sensor-based data to cluster patients based on their medication responses with further potential to assist with medication recommendations.

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Advancing the Mapping of Mangrove Forests at National-Scale Using Sentinel-1 and Sentinel-2 Time-Series Data with Google Earth Engine: A Case Study in China

Remote Sensing ◽

10.3390/rs12193120 ◽

2020 ◽

Vol 12 (19) ◽

pp. 3120

Author(s):

Luojia Hu ◽

Nan Xu ◽

Jian Liang ◽

Zhichao Li ◽

Luzhen Chen ◽

...

Keyword(s):

Time Series ◽

High Resolution ◽

Mangrove Forest ◽

Time Series Data ◽

Landsat Imagery ◽

Google Earth ◽

Series Data ◽

National Scale ◽

Google Earth Engine ◽

Sentinel 2

A high resolution mangrove map (e.g., 10-m), including mangrove patches with small size, is urgently needed for mangrove protection and ecosystem function estimation, because more small mangrove patches have disappeared with influence of human disturbance and sea-level rise. However, recent national-scale mangrove forest maps are mainly derived from 30-m Landsat imagery, and their spatial resolution is relatively coarse to accurately characterize the extent of mangroves, especially those with small size. Now, Sentinel imagery with 10-m resolution provides an opportunity for generating high-resolution mangrove maps containing these small mangrove patches. Here, we used spectral/backscatter-temporal variability metrics (quantiles) derived from Sentinel-1 SAR (Synthetic Aperture Radar) and/or Sentinel-2 MSI (Multispectral Instrument) time-series imagery as input features of random forest to classify mangroves in China. We found that Sentinel-2 (F1-Score of 0.895) is more effective than Sentinel-1 (F1-score of 0.88) in mangrove extraction, and a combination of SAR and MSI imagery can get the best accuracy (F1-score of 0.94). The 10-m mangrove map was derived by combining SAR and MSI data, which identified 20003 ha mangroves in China, and the area of small mangrove patches (<1 ha) is 1741 ha, occupying 8.7% of the whole mangrove area. At the province level, Guangdong has the largest area (819 ha) of small mangrove patches, and in Fujian, the percentage of small mangrove patches is the highest (11.4%). A comparison with existing 30-m mangrove products showed noticeable disagreement, indicating the necessity for generating mangrove extent product with 10-m resolution. This study demonstrates the significant potential of using Sentinel-1 and Sentinel-2 images to produce an accurate and high-resolution mangrove forest map with Google Earth Engine (GEE). The mangrove forest map is expected to provide critical information to conservation managers, scientists, and other stakeholders in monitoring the dynamics of the mangrove forest.

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Mapping sub-pixel corn distribution using MODIS time-series data and a random forest regression model

2017 6th International Conference on Agro-Geoinformatics ◽

10.1109/agro-geoinformatics.2017.8047051 ◽

2017 ◽

Author(s):

Qiong Hu ◽

Wenbin Wu ◽

Mark A. Friedl

Keyword(s):

Time Series ◽

Random Forest ◽

Regression Model ◽

Time Series Data ◽

Series Data ◽

Random Forest Regression

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Estimation of the seasonal leaf area index in urban oak forests using Sentinel-2 time series data

10.3997/2214-4609.201902134 ◽

2019 ◽

Author(s):

A. Kozlova ◽

I. Piestova ◽

L. Patrusheva ◽

M. Lubsky ◽

A. Nikulina ◽

...

Keyword(s):

Time Series ◽

Leaf Area Index ◽

Leaf Area ◽

Time Series Data ◽

Series Data ◽

Oak Forests ◽

Area Index ◽

Sentinel 2

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Assessing the Use of Sentinel-2 Time Series Data for Monitoring Cork Oak Decline in Portugal

Remote Sensing ◽

10.3390/rs11212515 ◽

2019 ◽

Vol 11 (21) ◽

pp. 2515 ◽

Cited By ~ 4

Author(s):

Ana Navarro ◽

Joao Catalao ◽

Joao Calvao

Keyword(s):

Time Series ◽

Vegetation Index ◽

Normalized Difference Vegetation Index ◽

Time Series Data ◽

Temporal Dynamics ◽

Cork Oak ◽

Series Data ◽

Tree Level ◽

Oak Decline ◽

Sentinel 2

In Portugal, cork oak (Quercus suber L.) stands cover 737 Mha, being the most predominant species of the montado agroforestry system, contributing to the economic, social and environmental development of the country. Cork oak decline is a known problem since the late years of the 19th century that has recently worsened. The causes of oak decline seem to be a result of slow and cumulative processes, although the role of each environmental factor is not yet established. The availability of Sentinel-2 high spatial and temporal resolution dense time series enables monitoring of gradual processes. These processes can be monitored using spectral vegetation indices (VI) as their temporal dynamics are expected to be related with green biomass and photosynthetic efficiency. The Normalized Difference Vegetation Index (NDVI) is sensitive to structural canopy changes, however it tends to saturate at moderate-to-dense canopies. Modified VI have been proposed to incorporate the reflectance in the red-edge spectral region, which is highly sensitive to chlorophyll content while largely unaffected by structural properties. In this research, in situ data on the location and vitality status of cork oak trees are used to assess the correlation between chlorophyll indices (CI) and NDVI time series trends and cork oak vitality at the tree level. Preliminary results seem to be promising since differences between healthy and unhealthy (diseased/dead) trees were observed.

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Characterizing bracken fern phenological cycle using time series data derived from Sentinel-2 satellite sensor

PLoS ONE ◽

10.1371/journal.pone.0257196 ◽

2021 ◽

Vol 16 (10) ◽

pp. e0257196

Author(s):

Trylee Nyasha Matongera ◽

Onisimo Mutanga ◽

Mbulisi Sibanda

Keyword(s):

Time Series ◽

Invasive Plant ◽

Time Series Data ◽

Model Fitting ◽

Quality Data ◽

Series Data ◽

Bracken Fern ◽

Phenological Cycle ◽

Phenological Metrics ◽

Sentinel 2

Bracken fern is an invasive plant that has caused serious disturbances in many ecosystems due to its ability to encroach into new areas swiftly. Adequate knowledge of the phenological cycle of bracken fern is required to serve as an important tool in formulating management plans to control the spread of the fern. This study aimed to characterize the phenological cycle of bracken fern using NDVI and EVI2 time series data derived from Sentinel-2 sensor. The TIMESAT program was used for removing low quality data values, model fitting and for extracting bracken fern phenological metrics. The Sentinel-2 satellite-derived phenological metrics were compared with the corresponding bracken fern phenological events observed on the ground. Findings from our study revealed that bracken fern phenological metrics estimated from satellite data were in close agreement with ground observed phenological events with R2 values ranging from 0.53–0.85 (p < 0.05). Although they are comparable, our study shows that NDVI and EVI2 differ in their ability to track the phenological cycle of bracken fern. Overall, EVI2 performed better in estimating bracken fern phenological metrics as it related more to ground observed phenological events compared to NDVI. The key phenological metrics extracted in this study are critical for improving the precision in the controlling of the spread of bracken fern as well as in implementing active protection strategies against the invasion of highly susceptible rangelands.

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