A one dimensional mapping method for time series data

2012 ◽  
Author(s):  
Hideaki Okazaki ◽  
Kaoru Yashikida ◽  
Hikaru Mizutani
Keyword(s):  
Time Series ◽  
Time Series Data ◽  
Mapping Method ◽  
Series Data ◽  
One Dimensional ◽  
Dimensional Mapping

scholarly journals Estimation of Natural Selection and Allele Age from Time Series Allele Frequency Data Using a Novel Likelihood-Based Approach

Genetics ◽  
2020 ◽  
Vol 216 (2) ◽  
pp. 463-480
Author(s):  
Zhangyi He ◽  
Xiaoyang Dai ◽  
Mark Beaumont ◽  
Feng Yu
Keyword(s):  
Time Series ◽  
Natural Selection ◽  
Time Series Data ◽  
Low Frequency ◽  
Series Data ◽  
Selection Coefficient ◽  
One Dimensional ◽  
Recent Sample ◽  
Backward Equation ◽  
Recent Action

Temporally spaced genetic data allow for more accurate inference of population genetic parameters and hypothesis testing on the recent action of natural selection. In this work, we develop a novel likelihood-based method for jointly estimating selection coefficient and allele age from time series data of allele frequencies. Our approach is based on a hidden Markov model where the underlying process is a Wright-Fisher diffusion conditioned to survive until the time of the most recent sample. This formulation circumvents the assumption required in existing methods that the allele is created by mutation at a certain low frequency. We calculate the likelihood by numerically solving the resulting Kolmogorov backward equation backward in time while reweighting the solution with the emission probabilities of the observation at each sampling time point. This procedure reduces the two-dimensional numerical search for the maximum of the likelihood surface, for both the selection coefficient and the allele age, to a one-dimensional search over the selection coefficient only. We illustrate through extensive simulations that our method can produce accurate estimates of the selection coefficient and the allele age under both constant and nonconstant demographic histories. We apply our approach to reanalyze ancient DNA data associated with horse base coat colors. We find that ignoring demographic histories or grouping raw samples can significantly bias the inference results.

A daily burned area mapping method using AVHRR time-series data

2021 ◽  
Author(s):  
Shuhan Lou ◽  
Yuanhong Liao ◽  
Yufu Liu ◽  
Yuqi Bai
Keyword(s):  
Climate Change ◽  
Time Series ◽  
Land Cover ◽  
Change Detection ◽  
Time Series Data ◽  
Mapping Method ◽  
Series Data ◽  
Burned Area ◽  
Burnt Area ◽  
Area Data

<p>The study of complex interactions between fire and atmospheric dynamics of the earth system is drawing increasing attention in recent years, especially when fire seasons are extended due to global warming, where the historical daily burnt area data played a pivotal role in analyzing wildfire regimes change. Existing products could not fully meet the temporal requirements: daily burnt area data in global fire emissions database (GFED4) starts from mid-2000 using MODIS while ESA Fire Climate Change Initiative (FireCCILT10) Dataset from 1982 to 2017 is provided on a monthly grid.</p><p>Advanced Very High Resolution Radiometer (AVHRR) series of sensors are widely used to develop pre‐MODIS daily historical records. However, compared to MODIS, the AVHRR sensor has a lower radiometric and geometric quality and is missing Short Wave Infrared (SWIR) band. To address the data quality problem, this research study presents a time-series mapping method for daily burned area using AVHRR composite. Daily fire-sensitive indices are calculated to develop a time-series data composite which is masked by the burnable surface of GLASS_GLC land cover product. Then, Continuous Change Detection and Classification (CCDC) time-series model, which originally implemented on Landsat data monitoring land cover change, is revised to detect an abrupt change in the time-series data composite and remove noise, ensuring temporal consistency. The image of a time-series breakpoint is further classified using a spatial contextual method to distinguish biomass burning from other forest degradation change like a landslide and is used to generate burned area probability map.</p><p>The methodology is verified in California, US, where fuel aridity increased during 1984–2015 driven by anthropogenic climate change. The samples are collected based on the National Monitoring Trends in Burn Severity（MTBS）Burned Areas Boundaries Dataset from 1984 – 2018 and California Department of Forestry and Fire Protection's Fire and Resource Assessment Program (FRAP) fire perimeters from since 1950. Primary results show that the proposed method can effectively detect burned area on daily basis with CCDC algorithm reducing the complexity of change detection.</p>

scholarly journals A Time Series Data Filling Method Based on LSTM—Taking the Stem Moisture as an Example

Sensors ◽  
2020 ◽  
Vol 20 (18) ◽  
pp. 5045
Author(s):  
Wei Song ◽  
Chao Gao ◽  
Yue Zhao ◽  
Yandong Zhao
Keyword(s):  
Neural Network ◽  
Time Series ◽  
Time Series Data ◽  
Environmental Parameters ◽  
Sensor Data ◽  
Series Data ◽  
One Dimensional ◽  
Filling Method ◽  
Stem Water ◽  
Bidirectional Lstm

In order to solve the problem of data loss in sensor data collection, this paper took the stem moisture data of plants as the object, and compared the filling value of missing data in the same data segment with different data filling methods to verify the validity and accuracy of the stem water filling data of the LSTM (Long Short-Term Memory) model. This paper compared the accuracy of missing stem water data for plants under different data filling methods to solve the problem of data loss in sensor data collection. Original stem moisture data was selected from Lagerstroemia Indica which was planted in the Haidian District of Beijing in June 2017. Part of the data which treated as missing data was manually deleted. Interpolation methods, time series statistical methods, the RNN (Recurrent Neural Network), and LSTM neural network were used to fill in the missing part and the filling results were compared with the original data. The result shows that the LSTM has more accurate performance than the RNN. The error values of the bidirectional LSTM model are the smallest among several models. The error values of the bidirectional LSTM are much lower than other methods. The MAPE (mean absolute percent error) of the bidirectional LSTM model is 1.813%. After increasing the length of the training data, the results further proved the effectiveness of the model. Further, in order to solve the problem of one-dimensional filling error accumulation, the LSTM model is used to conduct the multi-dimensional filling experiment with environmental data. After comparing the filling results of different environmental parameters, three environmental parameters of air humidity, photosynthetic active radiation, and soil temperature were selected as input. The results show that the multi-dimensional filling can greatly extend the sequence length while maintaining the accuracy, and make up for the defect that the one-dimensional filling accumulates errors with the increase of the sequence. The minimum MAPE of multidimensional filling is 1.499%. In conclusion, the data filling method based on LSTM neural network has a great advantage in filling the long-lost time series data which would provide a new idea for data filling.

scholarly journals Fatigue-Related Changes in Spatiotemporal Parameters, Joint Kinematics and Leg Stiffness in Expert Runners During a Middle-Distance Run

2021 ◽  
Vol 3 ◽  
Author(s):  
Felix Möhler ◽  
Cagla Fadillioglu ◽  
Thorsten Stein
Keyword(s):  
Time Series ◽  
Time Series Data ◽  
Sagittal Plane ◽  
Statistical Parametric Mapping ◽  
Interval Training ◽  
Mapping Method ◽  
Upper Body ◽  
Series Data ◽  
Distance Running ◽  
Step Frequency

Fatigue with its underlying mechanisms and effects is a broadly discussed topic and an important phenomenon, particularly in endurance sports. Although several studies have already shown a variety of changes in running kinematics with fatigue, few of them have analyzed competitive runners and even fewer have focused on middle-distance running. Furthermore, the studies investigating fatigue-related changes have mostly reported the results in terms of discrete parameters [e.g., range of motion (RoM)] in the frontal or sagittal plane, and therefore potentially overlooked effects occurring in subphases of the gait cycle or in the transverse plane. On this basis, the goal of the present study was to analyze the effects of exhaustive middle-distance running on expert runners by means of both discrete parameters and time series analysis in 3D. In this study, 13 runners ran on a treadmill to voluntary exhaustion at their individually determined fatigue speeds which was held constant during the measurements. Kinematic data were collected by means of a 3D motion capture system. Spatiotemporal and stiffness parameters as well as the RoM of joints and of center of mass (CoM) within the stance and flight phases were calculated. Independent t-tests were performed to investigate any changes in means and coefficients of variation (CV) of these parameters between the rested (PRE) and fatigued (POST) state. Statistical parametric mapping method was applied on the time series data of the joints and the CoM. Results from this exploratory study revealed that during a middle-distance run, expert runners change their stance time, rather than their step frequency or step length in order to maintain the constant running speed as long as possible. Increased upper body movements occurred to counteract the increased angular moment of the lower body possibly due to longer stance times. These findings provide insights into adaptation strategies of expert runners during a fatiguing middle-distance run and may serve a valuable information particularly for comparisons with other group of runners (e.g., females or non-athletes) as well with other conditions (e.g., non-constant speed or interval training), and might be useful for the definition of training goals (e.g., functional core training).

Graphical Exploratory Data Analysis for Categorical Longitudinal and Time Series Data

2013 ◽  
Author(s):  
Stephen J. Tueller ◽  
Richard A. Van Dorn ◽  
Georgiy Bobashev ◽  
Barry Eggleston
Keyword(s):  
Time Series ◽  
Data Analysis ◽  
Exploratory Data Analysis ◽  
Time Series Data ◽  
Series Data ◽  
Exploratory Data

Faktor-Faktor Yang Mempengaruhi Nilai Tukar Dollar Amerika Serikat Terhadap Rupiah Tahun 2000–2013

2017 ◽  
Vol 1 (2) ◽  
pp. 177-191
Author(s):  
Rizki Rahma Kusumadewi ◽  
Wahyu Widayat
Keyword(s):  
Time Series ◽  
Exchange Rate ◽  
Money Supply ◽  
Time Series Data ◽  
The United States ◽  
Economic Conditions ◽  
Series Data ◽  
Arch Model ◽  
United States Dollar ◽  
The Exchange Rate

Exchange rate is one tool to measure a country’s economic conditions. The growth of a stable currency value indicates that the country has a relatively good economic conditions or stable. This study has the purpose to analyze the factors that affect the exchange rate of the Indonesian Rupiah against the United States Dollar in the period of 2000-2013. The data used in this study is a secondary data which are time series data, made up of exports, imports, inflation, the BI rate, Gross Domestic Product (GDP), and the money supply (M1) in the quarter base, from first quarter on 2000 to fourth quarter on 2013. Regression model time series data used the ARCH-GARCH with ARCH model selection indicates that the variables that significantly influence the exchange rate are exports, inflation, the central bank rate and the money supply (M1). Whereas import and GDP did not give any influence.

An Anomaly Detection Method with Exemplar Subsequence for Time Series Data

2016 ◽  
Vol 136 (3) ◽  
pp. 363-372
Author(s):  
Takaaki Nakamura ◽  
Makoto Imamura ◽  
Masashi Tatedoko ◽  
Norio Hirai
Keyword(s):  
Time Series ◽  
Anomaly Detection ◽  
Time Series Data ◽  
Detection Method ◽  
Series Data

The Comparison of Land Subsidence between East and West Side of Bangkok, Thailand

2020 ◽  
Vol 17 (3) ◽  
pp. 1
Author(s):  
Angkana Pumpuang ◽  
Anuphao Aobpaet
Keyword(s):  
Time Series ◽  
Land Subsidence ◽  
Time Series Data ◽  
Series Data ◽  
Industrial Estates ◽  
Vertical Displacements ◽  
Land Deformation ◽  
Extensive Farming ◽  
Chao Phraya River ◽  
Set Up

The land deformation in line of sight (LOS) direction can be measured using time series InSAR. InSAR can successfully measure land subsidence based on LOS in many big cities, including the eastern and western regions of Bangkok which is separated by Chao Phraya River. There are differences in prosperity between both sides due to human activities, land use, and land cover. This study focuses on the land subsidence difference between the western and eastern regions of Bangkok and the most possible cause affecting the land subsidence rates. The Radarsat-2 single look complex (SLC) was used to set up the time series data for long term monitoring. To generate interferograms, StaMPS for Time Series InSAR processing was applied by using the PSI algorithm in DORIS software. It was found that the subsidence was more to the eastern regions of Bangkok where the vertical displacements were +0.461 millimetres and -0.919 millimetres on the western and the eastern side respectively. The districts of Nong Chok, Lat Krabang, and Khlong Samwa have the most extensive farming area in eastern Bangkok. Besides, there were also three major industrial estates located in eastern Bangkok like Lat Krabang, Anya Thani and Bang Chan Industrial Estate. By the assumption of water demand, there were forty-eight wells and three wells found in the eastern and western part respectively. The number of groundwater wells shows that eastern Bangkok has the demand for water over the west, and the pumping of groundwater is a significant factor that causes land subsidence in the area.Keywords: Subsidence, InSAR, Radarsat-2, Bangkok

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