scholarly journals Genes governing swarming in Bacillus subtilis and evidence for a phase variation mechanism controlling surface motility

2004 ◽  
Vol 52 (2) ◽  
pp. 357-369 ◽  
Author(s):  
Daniel B. Kearns ◽  
Frances Chu ◽  
Rivka Rudner ◽  
Richard Losick
2009 ◽  
Vol 5 (12) ◽  
pp. e1000710 ◽  
Author(s):  
Matteo M. E. Metruccio ◽  
Eva Pigozzi ◽  
Davide Roncarati ◽  
Francesco Berlanda Scorza ◽  
Nathalie Norais ◽  
...  

2018 ◽  
Author(s):  
Olga O Bochkareva ◽  
Elena V Moroz ◽  
Iakov I Davydov ◽  
Mikhail S Gelfand

AbstractBackgroundThe genus Burkholderia consists of species that occupy remarkably diverse ecological niches. Its best known members are important pathogens, B. mallei and B. pseudomallei, which cause glanders and melioidosis, respectively. Burkholderia genomes are unusual due to their multichromosomal organization.ResultsWe performed integrated genomic analysis of 127 Burkholderia strains. The pan-genome is open with the saturation to be reached between 86,000 and 88,000 genes. The reconstructed rearrangements indicate a strong avoidance of intra-replichore inversions that is likely caused by selection against the transfer of large groups of genes between the leading and the lagging strands. Translocated genes also tend to retain their position in the leading or the lagging strand, and this selection is stronger for large syntenies. Integrated reconstruction of chromosome rearrangements in the context of strains phylogeny reveals parallel rearrangements that may indicate inversion-based phase variation and integration of new genomic islands. In particular, we detected parallel inversions in the second chromosomes of B. pseudomallei with breakpoints formed by genes encoding membrane components of multidrug resistance complex, that may be linked to a phase variation mechanism. Two genomic islands, spreading horizontally between chromosomes, were detected in the B. cepacia group.ConclusionsThis study demonstrates the power of integrated analysis of pan-genomes, chromosome rearrangements, and selection regimes. Non-random inversion patterns indicate selective pressure, inversions are particularly frequent in a recent pathogen B. mallei, and, together with periods of positive selection at other branches, may indicate adaptation to new niches. One such adaptation could be a possible phase variation mechanism in B. pseudomallei.


2002 ◽  
Vol 184 (16) ◽  
pp. 4334-4342 ◽  
Author(s):  
Christine A. White-Ziegler ◽  
Alia M. Black ◽  
Stacie H. Eliades ◽  
Sarah Young ◽  
Kimberly Porter

ABSTRACT In uropathogenic Escherichia coli, P pili (Pap) facilitate binding to host epithelial cells and subsequent colonization. Whereas P pili can be produced at 37°C, the expression of these fimbriae is suppressed at 23°C. Previously, insertion mutations in rimJ, a gene encoding the N-terminal acetyltransferase of ribosomal protein S5, were shown to disrupt this thermoregulatory response, allowing papBA transcription at low temperature. In this study, we created an in-frame deletion of rimJ. This deletion relieved the repressive effects not only of low temperature but also of rich (Luria-Bertani [LB]) medium and glucose on papBA transcription, indicating that RimJ modulates papBA transcription in response to multiple environmental stimuli. papI transcription was also shown to be regulated by RimJ. papBA transcription is also controlled by a phase variation mechanism. We demonstrated that the regulators necessary to establish a phase ON state—PapI, PapB, Dam, Lrp, and cyclic AMP-CAP-are still required for papBA transcription in a rimJ mutant strain. rimJ mutations increase the rate at which bacteria transition into the phase ON state, indicating that RimJ inhibits the phase OFF→ON transition. A ΔrimJ hns651 mutant is viable on LB medium but not on minimal medium. This synthetic lethality, along with transcriptional analyses, indicates that RimJ and H-NS work through separate pathways to control papBA transcription. Mutations in rimJ do not greatly influence the transcription of the fan, daa, or fim operon, suggesting that RimJ may be a pap-specific regulator. Overexpression of rimJ under conditions repressive for papBA transcription complements the ΔrimJ mutation but has little effect on transcription under activating conditions, indicating that the ability of RimJ to regulate transcription is environmentally controlled.


2001 ◽  
Vol 183 (9) ◽  
pp. 2963-2968 ◽  
Author(s):  
Stephen A. Sciochetti ◽  
Garry W. Blakely ◽  
Patrick J. Piggot

ABSTRACT The major role of RecA is thought to be in helping repair and restart stalled replication forks. During exponential growth,Bacillus subtilis recA cells exhibited few microscopically observable nucleoid defects. However, the efficiency of plating was about 12% of that of the parent strain. A substantial and additive defect in viability was also seen for addB andrecF mutants, suggesting a role for the corresponding recombination paths during normal growth. Upon entry into stationary phase, a subpopulation (∼15%) of abnormally long cells and nucleoids developed in B. subtilis recA mutants. In addition,recA mutants showed a delay in, and a diminished capacity for, effecting prespore nucleoid condensation.


2012 ◽  
Vol 78 (18) ◽  
pp. 6540-6544 ◽  
Author(s):  
Emilia Ghelardi ◽  
Sara Salvetti ◽  
Mara Ceragioli ◽  
Sokhna A. Gueye ◽  
Francesco Celandroni ◽  
...  

ABSTRACTMulticellular communities produced byBacillus subtiliscan adopt sliding or swarming to translocate over surfaces. While sliding is a flagellum-independent motility produced by the expansive forces in a growing colony, swarming requires flagellar functionality and is characterized by the appearance of hyperflagellated swarm cells that associate in bundles or rafts during movement. Previous work has shown that swarming by undomesticatedB. subtilisstrains requiresswrA, a gene that upregulates the expression of flagellar genes and increases swimming motility, and surfactin, a lipopeptide biosurfactant that also facilitates sliding. Through an analysis ofswrA+andswrAmutant laboratory strains with or without a mutation insfp(a gene involved in surfactin production), we show that bothswrAand surfactin upregulate the transcription of the flagellin gene and increase bacterial swimming. Surfactin also allows the nonswarmingswrAmutant strain to efficiently colonize moist surfaces by sliding. Finally, we reconfirm the essential role ofswrAin swarming and show that surfactin, which increases surface wettability, allowsswrA+strains to produce swarm cells on media at low humidity.


2003 ◽  
Vol 185 (18) ◽  
pp. 5627-5631 ◽  
Author(s):  
Rebecca F. Kinsinger ◽  
Megan C. Shirk ◽  
Ray Fall

ABSTRACT Motility on surfaces is an important mechanism for bacterial colonization of new environments. In this report, we describe detection of rapid surface motility in the wild-type Bacillus subtilis Marburg strain, but not in several B. subtilis 168 derivatives. Motility involved formation of rapidly spreading dendritic structures, followed by profuse surface colonies if sufficient potassium ion was present. Potassium ion stimulated surfactin secretion, and the role of surfactin in surface motility was confirmed by deletion of a surfactin synthase gene. Significantly, this motility was independent of flagella. These results demonstrate that wild-type B. subtilis strains can use both swimming and sliding-type mechanisms to move across surfaces.


2003 ◽  
Vol 185 (23) ◽  
pp. 6990-6994 ◽  
Author(s):  
Joshua Torres-Cruz ◽  
Marjan W. van der Woude

ABSTRACT Slipped-strand mispairing (SSM) has not been identified as a mechanism of phase variation in Escherichia coli. Using a reporter gene, we show that sequences that cause phase variation by SSM in Haemophilus influenzae also lead to phase variation when introduced onto the chromosome of E. coli, and the frequencies of switching are in the biologically relevant range. Thus, the absence of SSM-mediated phase variation in E. coli does not appear to be due to a mechanistic constraint.


2021 ◽  
Author(s):  
Tao Tian ◽  
Bingbing Sun ◽  
Haowen Shi ◽  
Tantan Gao ◽  
Yinghao He ◽  
...  

AbstractBeneficial rhizobacteria promote plant growth and protect plants against phytopathogens. Effective colonization on plant roots is critical for the rhizobacteria to exert beneficial activities. How bacteria migrate swiftly in the soil of semisolid or solid nature remains unclear. Here we report that sucrose, a disaccharide ubiquitously deployed by photosynthetic plants for fixed carbon transport and storage, and abundantly secreted from plant roots, promotes solid surface motility (SSM) and root colonization by Bacillus subtilis through a previously uncharacterized mechanism. Sucrose induces robust SSM by triggering a signaling cascade, first through extracellular synthesis of polymeric levan, which in turn stimulates strong production of surfactin and hyper-flagellation of the cells. B. subtilis poorly colonizes the roots of Arabidopsis thaliana mutants deficient in root-exudation of sucrose, while exogenously added sucrose selectively shapes the rhizomicrobiome associated with the tomato plant roots, promoting specifically bacilli and pseudomonad. We propose that sucrose activates a signaling cascade to trigger SSM and promote rhizosphere colonization by B. subtilis. Our findings also suggest a practicable approach to boost prevalence of beneficial Bacillus species in plant protection.


Author(s):  
Dwight Anderson ◽  
Charlene Peterson ◽  
Gursaran Notani ◽  
Bernard Reilly

The protein product of cistron 3 of Bacillus subtilis bacteriophage Ø29 is essential for viral DNA synthesis and is covalently bound to the 5’-termini of the Ø29 DNA. When the DNA-protein complex is cleaved with a restriction endonuclease, the protein is bound to the two terminal fragments. The 28,000 dalton protein can be visualized by electron microscopy as a small dot and often is seen only when two ends are in apposition as in multimers or in glutaraldehyde-fixed aggregates. We sought to improve the visibility of these small proteins by use of antibody labeling.


Planta Medica ◽  
2008 ◽  
Vol 74 (09) ◽  
Author(s):  
N Padilla-Montaño ◽  
IL Bazzocchi ◽  
L Moujir

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