GENE DIVERSITY AND GENETIC STRUCTURE IN A NARROW ENDEMIC, TORREY PINE (PINUS TORREYANA PARRY EX CARR.)

Evolution ◽  
1983 ◽  
Vol 37 (1) ◽  
pp. 79-85 ◽  
Author(s):  
F. Thomas Ledig ◽  
M. Thompson Conkle
1999 ◽  
Vol 89 (8) ◽  
pp. 639-645 ◽  
Author(s):  
B. A. McDonald ◽  
J. Zhan ◽  
J. J. Burdon

Restriction fragment length polymorphism (RFLP) markers were used to determine the genetic structure of Australian field populations of the barley scald pathogen Rhynchosporium secalis. Fungal isolates were collected by hierarchical sampling from five naturally infected barley fields in different geographic locations during a single growing season. Genetic variation was high in Australian R. secalis populations. Among the 265 fungal isolates analyzed, 214 distinct genotypes were identified. Average genotype diversity within a field population was 65% of its theoretical maximum. Nei's average gene diversity across seven RFLP loci was 0.54. The majority (76%) of gene diversity was distributed within sampling site areas measuring ≈1 m2; 19% of gene diversity was distributed among sampling sites within fields; and 5% of gene diversity was distributed among fields. Fungal populations from different locations differed significantly both in allele frequencies and genotype diversities. The degree of genetic differentiation was significantly correlated with geographic distance between populations. Our results suggest that the R. secalis population in Western Australia has a different genetic structure than populations in Victoria and South Australia.


2020 ◽  
Vol 13 ◽  
pp. 194008292094917
Author(s):  
Misael D. Mancilla-Morales ◽  
Santiago Romero-Fernández ◽  
Araceli Contreras-Rodríguez ◽  
José J. Flores-Martínez ◽  
Víctor Sánchez-Cordero ◽  
...  

Estimations on the influence of evolutionary and ecological forces as drivers of population gene diversity and genetic structure have been performed on a growing number of colonial seabirds, but many remain poorly studied. In particular, the population genetic structure of storm-petrels (Hydrobatidae) has been evaluated in only a few of the 24 recognized species. We assessed the genetic diversity and population structure of the Black Storm-Petrel ( Hydrobates melania) and the Least Storm-Petrel ( Hydrobates microsoma) in the Gulf of California. The two species were selected because they are pelagic seabirds with comparable ecological traits and breeding grounds. Recent threats such as introduced species of predators and human disturbance have resulted in a decline of many insular vertebrate populations in this region and affected many different aspects of their life histories (ranging from reproductive success to mate selection), with a concomitant loss of genetic diversity. To elucidate to what extent the population genetic structure occurs in H. melania and H. microsoma, we used 719 base pairs from the mitochondrial cytochrome oxidase c subunit I gene. The evaluation of their molecular diversity, genetic structure, and gene flow were performed through diversity indices, analyses of molecular and spatial variance, and isolation by distance (IBD) across sampling sites, respectively. The population genetic structure (via AMOVA and SAMOVA) and isolation by distance (pairwise p-distances and FST/1– FST (using ΦST) were inferred for H. microsoma. However, for H. melania evidence was inconclusive. We discuss explanations leading to divergent population genetic structure signatures in these species, and the consequences for their conservation.


1997 ◽  
Vol 75 (9) ◽  
pp. 1470-1478 ◽  
Author(s):  
Mei Sun

Yellow starthistle (Centaurea solstitialis L.), a diploid annual native to the Mediterranean region, has rapidly colonized a variety of disturbed habitats in the western United States since its accidental introduction in the mid-19th century. Population genetic attributes were investigated in association with the species' colonizing success. Allozyme electrophoretic surveys were conducted for a total of 22 populations from California, Washington, and Idaho, including the southern and northern extremes of its distribution in the Pacific states. High levels of allozyme variation exist within populations, on average 43% of loci were polymorphic, with 2.88 alleles, a heterozygosity of 0.38, and gene diversity of 0.35 per polymorphic locus. At the species level, 56% of loci were polymorphic, with 2.85 alleles per locus, and the total gene diversity was 0.172. With the exception of a marginal population San Diego, the level of genetic diversity was similarly high in all regions. Lack of interpopulation genetic divergence (GST = 0.095) suggests that majority of the colonial populations were founded by a large number of genotypes and that high levels of gene flow may exist between local populations (Nm = 2.38). Information on genetic structure of the weed populations may aid our understanding of the species' colonizing ability in North America and is important for predicting the effectiveness of biological control program. Key words: allozyme variation, Centaurea solstitialis, population genetics, weed colonization, yellow starthistle.


1983 ◽  
Vol 36 (6) ◽  
pp. 503 ◽  
Author(s):  
AHD Brown ◽  
JJ Burdon

A population of E. plantagineum was surveyed for its genetic structure at 23 isozyme loci. More than half (13) of these loci were polymorphic, with an average number of three alleles per locus, a gene diversity of 38% and heterozygosity of 35%. More importantly, the distribution of multilocus heterozygosity over individuals was found to approximate that assuming independence among loci or no linkage disequilibrium. The population consisted of a vast array of multilocus genotypes. This pattern indicates that the outbreeding system encourages recombination sufficient to outweigh the effects on multilocus structure of bottlenecks in population size. Genic and genotypic variation presumably allows high levels of biochemical flexibility in populations of E. plantagineum. Such flexibility could hamper attempts at biological control.


1999 ◽  
Vol 89 (10) ◽  
pp. 915-919 ◽  
Author(s):  
K. Et-touil ◽  
L. Bernier ◽  
J. Beaulieu ◽  
J. A. Bérubé ◽  
A. Hopkin ◽  
...  

The genetic structure of populations of Cronartium ribicola was studied by sampling nine populations from five provinces in eastern Canada and generating DNA profiles using nine random amplified polymorphic DNA markers. Most of the total gene diversity (Ht = 0.386) was present within populations (Hw = 0.370), resulting in a low level of genetic differentiation among populations in northeastern North America (Fst = 0.062). A hierarchical analysis of genetic structure using an analysis of molecular variance (AMOVA) revealed no statistically significant genetic differentiation among provinces or among regions. Yet, genetic differentiation among populations within regions or provinces was small (AMOVA φst = 0.078) but statistically significant (P < 0.001) and was several orders of magnitude larger than differentiation among provinces. This is consistent with a scenario of subpopulations within a metapopulation, in which random drift following migration and new colonization are major evolutionary forces. A phenetic analysis using genetic distances revealed no apparent correlation between genetic distance and the province of origin of the populations. The hypothesis of isolation-by-distance in the eastern populations of C. ribicola was rejected by computing Mantel correlation coefficients between genetic and geographic distance matrices (P > 0.05). These results show that eastern Canadian provinces are part of the same white pine blister rust epidemiological unit. Nursery distribution systems are controlled provincially, with virtually no seedling movement among provinces; therefore, infected nursery material may not play an important role in the dissemination of this disease. Long-distance spore dispersal across provincial boundaries appears to be an epidemiologically important factor for this pathogen.


2015 ◽  
Vol 66 (12) ◽  
pp. 1201 ◽  
Author(s):  
Ana Paula Borges Costa ◽  
Pedro Fruet ◽  
Fábio Gonçalves Daura-Jorge ◽  
Paulo César Simões-Lopes ◽  
Paulo Henrique Ott ◽  
...  

The genetic structure of bottlenose dolphin communities found along the southern Brazilian coast is reported in this study. Genetic structure analysis using biopsy samples from free ranging dolphins and tissue samples from stranded dolphins revealed a fine-scale population structure among three distinct groups. The first genetically distinct group was composed of resident dolphins of Laguna with a high degree of site fidelity. The second group was composed of one photo-identified dolphin, previously recognised by its interaction with fishermen, and dolphins that stranded near the mouth of Tramandaí Lagoon. Moderate nuclear and low mitochondrial gene diversity was found in dolphins of those coastal communities, whereas most of the dolphins stranded along the coast showed markedly higher levels of gene diversity at both markers. These stranded dolphins of unknown origin formed the third distinct group, which may be part of a larger offshore community. These results demonstrate the presence of at least three bottlenose dolphin clusters along this portion of the Brazilian coast, with the coastal specimens appearing to be only neighbours of a larger offshore community that eventually strands along the coast, highlighting the importance of the establishment of management and conservation measures for the species at a local scale.


2006 ◽  
Vol 72 (1) ◽  
pp. 185-191 ◽  
Author(s):  
Lilian Gout ◽  
Maria Eckert ◽  
Thierry Rouxel ◽  
Marie-Hélène Balesdent

ABSTRACT Leptosphaeria maculans is the most ubiquitous fungal pathogen of Brassica crops and causes the devastating stem canker disease of oilseed rape worldwide. We used minisatellite markers to determine the genetic structure of L. maculans in four field populations from France. Isolates were collected at three different spatial scales (leaf, 2-m2 field plot, and field) enabling the evaluation of spatial distribution of the mating type alleles and of genetic variability within and among field populations. Within each field population, no gametic disequilibrium between the minisatellite loci was detected and the mating type alleles were present at equal frequencies. Both sexual and asexual reproduction occur in the field, but the genetic structure of these populations is consistent with annual cycles of randomly mating sexual reproduction. All L. maculans field populations had a high level of gene diversity (H = 0.68 to 0.75) and genotypic diversity. Within each field population, the number of genotypes often was very close to the number of isolates. Analysis of molecular variance indicated that >99.5% of the total genetic variability was distributed at a small spatial scale, i.e., within 2-m2 field plots. Population differentiation among the four field populations was low (GST < 0.02), suggesting a high degree of gene exchange between these populations. The high gene flow evidenced here in French populations of L. maculans suggests a rapid countrywide diffusion of novel virulence alleles whenever novel resistance sources are used.


2010 ◽  
Vol 10 (4) ◽  
pp. 298-304 ◽  
Author(s):  
Tesfahun Alemu Setotaw ◽  
Eveline Teixeira Caixeta ◽  
Guilherme Ferreira Pena ◽  
Eunize Maciel Zambolim ◽  
Antonio Alves Pereira ◽  
...  

AFLP, RAPD and SSR molecular markers were used to study the genetic diversity and genetic structure of the Híbrido de Timor germplasm. The principal coordinate analysis, UPGMA cluster analysis based on genetic dissimilarity of Jaccard, Bayesian model-based cluster analysis, percentage of polymorphic loci, Shannon's information index and Nei gene diversity were employed to assess the genetic diversity. The analyses demonstrated a high genetic diversity among Híbrido de Timor accessions. UPGMA and Bayesian cluster analyses grouped the accessions into three clusters. The genetic structure of Híbrido de Timor is reported. The management of Híbrido de Timor germplasm variability and its potential use in breeding programs are discussed.


Genetics ◽  
2003 ◽  
Vol 165 (4) ◽  
pp. 2117-2128 ◽  
Author(s):  
Kejun Liu ◽  
Major Goodman ◽  
Spencer Muse ◽  
J Stephen Smith ◽  
Ed Buckler ◽  
...  

AbstractTwo hundred and sixty maize inbred lines, representative of the genetic diversity among essentially all public lines of importance to temperate breeding and many important tropical and subtropical lines, were assayed for polymorphism at 94 microsatellite loci. The 2039 alleles identified served as raw data for estimating genetic structure and diversity. A model-based clustering analysis placed the inbred lines in five clusters that correspond to major breeding groups plus a set of lines showing evidence of mixed origins. A “phylogenetic” tree was constructed to further assess the genetic structure of maize inbreds, showing good agreement with the pedigree information and the cluster analysis. Tropical and subtropical inbreds possess a greater number of alleles and greater gene diversity than their temperate counterparts. The temperate Stiff Stalk lines are on average the most divergent from all other inbred groups. Comparison of diversity in equivalent samples of inbreds and open-pollinated landraces revealed that maize inbreds capture &lt;80% of the alleles in the landraces, suggesting that landraces can provide additional genetic diversity for maize breeding. The contributions of four different segments of the landrace gene pool to each inbred group's gene pool were estimated using a novel likelihood-based model. The estimates are largely consistent with known histories of the inbreds and indicate that tropical highland germplasm is poorly represented in maize inbreds. Core sets of inbreds that capture maximal allelic richness were defined. These or similar core sets can be used for a variety of genetic applications in maize.


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