Identification and characterization of the AINV genes in five Gossypium species with potential functions of GhAINVs under abiotic stress

2021 ◽  
Author(s):  
Jiaoyan Lv ◽  
Baizhi Chen ◽  
Changkai Ma ◽  
Kaikai Qiao ◽  
Shuli Fan ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Potential Functions ◽  
Gossypium Species ◽  
Identification And Characterization

Genome wide identification and characterization of abiotic stress responsive lncRNAs in Capsicum annuum

2021 ◽  
Author(s):  
Pooja Moni Baruah ◽  
Debasish B. Krishnatreya ◽  
Kuntala Sarma Bordoloi ◽  
Sarvajeet Singh Gill ◽  
Niraj Agarwala
Keyword(s):  
Abiotic Stress ◽  
Capsicum Annuum ◽  
Genome Wide ◽  
Identification And Characterization

scholarly journals Identification and Characterization of Abiotic Stress Responsive CBL-CIPK Family Genes in Medicago

2021 ◽  
Vol 22 (9) ◽  
pp. 4634
Author(s):  
Wenxuan Du ◽  
Junfeng Yang ◽  
Lin Ma ◽  
Qian Su ◽  
Yongzhen Pang
Keyword(s):  
Abiotic Stress ◽  
Abiotic Stresses ◽  
Expression Patterns ◽  
Interacting Protein ◽  
Forage Crop ◽  
Cis Acting ◽  
Protein Motifs ◽  
Plant Signal Transduction ◽  
Identification And Characterization

The calcineurin B-like protein (CBL) and CBL-interacting protein kinase (CIPK) play important roles in plant signal transduction and response to abiotic stress. Plants of Medicago genus contain many important forages, and their growth is often affected by a variety of abiotic stresses. However, studies on the CBL and CIPK family member and their function are rare in Medicago. In this study, a total of 23 CBL and 58 CIPK genes were identified from the genome of Medicago sativa as an important forage crop, and Medicaog truncatula as the model plant. Phylogenetic analysis suggested that these CBL and CIPK genes could be classified into five and seven groups, respectively. Moreover, these genes/proteins showed diverse exon-intron organizations, architectures of conserved protein motifs. Many stress-related cis-acting elements were found in their promoter region. In addition, transcriptional analyses showed that these CBL and CIPK genes exhibited distinct expression patterns in various tissues, and in response to drought, salt, and abscisic acid treatments. In particular, the expression levels of MtCIPK2 (MsCIPK3), MtCIPK17 (MsCIPK11), and MtCIPK18 (MsCIPK12) were significantly increased under PEG, NaCl, and ABA treatments. Collectively, our study suggested that CBL and CIPK genes play crucial roles in response to various abiotic stresses in Medicago.

Genome-wide identification and characterization of UGT family in pigeonpea (Cajanus cajan) and expression analysis in abiotic stress

Trees ◽  
2019 ◽  
Vol 33 (4) ◽  
pp. 987-1002 ◽  
Author(s):  
Zhihua Song ◽  
Lili Niu ◽  
Qing Yang ◽  
Biying Dong ◽  
Litao Wang ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Expression Analysis ◽  
Cajanus Cajan ◽  
Genome Wide ◽  
Identification And Characterization

scholarly journals Identification and characterization of NAC genes in response to abiotic stress conditions in Picea wilsonii using transcriptome sequencing

2020 ◽  
Vol 34 (1) ◽  
pp. 93-103 ◽  
Author(s):  
Yuxiao Guo ◽  
Hehua Zhang ◽  
Yihang Yuan ◽  
Xiaoyue Cui ◽  
Lingyun Zhang
Keyword(s):  
Abiotic Stress ◽  
Transcriptome Sequencing ◽  
Stress Conditions ◽  
Picea Wilsonii ◽  
Identification And Characterization

scholarly journals Identification and characterization of a seed-specific grapevine dehydrin involved in abiotic stress response within tolerant varieties

2014 ◽  
Vol 38 ◽  
pp. 1157-1168 ◽  
Author(s):  
Mohsen HANANA ◽  
Samia DALDOUL ◽  
Romain FOUQUET ◽  
Laurent DELUC ◽  
Céline LEON ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Stress Response ◽  
Abiotic Stress Response ◽  
Identification And Characterization

scholarly journals Genome-Wide Identification and Characterization of AP2/ERF Transcription Factor Family Genes in Oil Palm under Abiotic Stress Conditions

2021 ◽  
Vol 22 (6) ◽  
pp. 2821
Author(s):  
Lixia Zhou ◽  
Rajesh Yarra
Keyword(s):  
Transcription Factor ◽  
Abiotic Stress ◽  
Oil Palm ◽  
Family Members ◽  
Stress Conditions ◽  
Transcription Factor Family ◽  
Genome Wide ◽  
Identification And Characterization ◽  
Erf Transcription Factor

The AP2/ERF transcription factor family members play crucial roles in controlling plant growth and development, as well as responses to various abiotic stresses. Genome-wide identification and characterization of AP2/ERF genes has not yet been carried out in the oil palm genome. In the present work, we reported the occurrence of 172 EgAP2/ERFs (AP2, ERF, RAV & Soloist members) through genome-wide identification. Phylogenetic analysis was used to divide them into four groups, including: 34 AP2, 131 ERF, 5 RAV, and 2 Soloist gene family members. All 172 AP2/ERF members were unevenly distributed across 16 chromosomes of oil palm. Gene duplication analysis elucidated the tandem duplication of AP2/ERFs on chromosome blocks of the oil palm genome during evolution. Gene structure as well as conserved motif analysis demonstrated the conserved nature of intron/exon organization and motifs among the AP2/ERF genes. Several cis-regulatory elements—related to hormone, stress, and defense responses—were identified in the promoter regions of AP2/ERFs. Tissue-specific expression of 172 AP2/ERFs in five different tissues of oil palm was also revealed by heatmap analysis using the available transcriptome data. Finally, abiotic stress (salinity, cold & drought)-responsive AP2/ERFs in the oil palm genome were validated through qPCR analysis. Our study provided valuable information on oil palm AP2/ERF superfamily members and dissected their role in abiotic stress conditions.

scholarly journals Genome-wide identification and characterization of F-box family proteins in sweet potato and its expression profile analysis under abiotic stress

Gene ◽  
2022 ◽  
pp. 146191
Author(s):  
Hanna Amoanimaa-Dede ◽  
Shao Zhengwei ◽  
Chuntao Su ◽  
Akwasi Yeboah ◽  
Hongbo Zhu
Keyword(s):  
Abiotic Stress ◽  
Sweet Potato ◽  
Expression Profile ◽  
Profile Analysis ◽  
Expression Profile Analysis ◽  
Genome Wide ◽  
Identification And Characterization
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