scholarly journals Genetic Diversity of Populations of Akhal-Teke Horses from the Czech Republic, Russia, Estonia and Switzerland

2016 ◽  
Vol 64 (2) ◽  
pp. 461-466 ◽  
Author(s):  
Iva Jiskrová ◽  
Irena Vrtková ◽  
Michaela Prausová
Keyword(s):  
Genetic Diversity ◽  
Czech Republic ◽  
Genetic Distance ◽  
Genetic Parameters ◽  
Inbreeding Coefficient ◽  
The Other ◽  
Effective Number ◽  
The Czech Republic ◽  
Expected Heterozygosity ◽  
The Mean

Our research objective was to evaluate the genetic parameters in the populations of Akhal-Teke horses in 4 countries: Czech Republic, Russia, Estonia and Switzerland. The experiment involved a total of 325 Akhal-Teke horses; 121 horses came from the Czech Republic, 152 were from Russia, 28 were from Estonia and 24 horses came from Switzerland. For the divided database of micro satellites we evaluated the following parameters: effective number of alleles, frequency of alleles for the groups of horses; the observed heterozygosity (HO); the expected heterozygosity (HE); the inbreeding coefficient (Fis); and the genetic distance. The researched population is polymorphous. The population in the Czech Republic differs from the other three countries in the numbers of alleles per locus. The Czech population also includes Akhal-Teke horses which are not purebred Akhal-Teke horses. A confirmation of this fact is the effective number of alleles. The population in the Czech Republic exhibits the highest mean number of effective alleles. The Akhal-Teke population in Estonia exhibits the highest mean observed heterozygosity. By contrast, the population in the Czech Republic exhibits the lowest mean observed heterozygosity. In the Czech Republic the mean Fis value is a positive number indicating a reduced number of heterozygotes in the Czech Akhal-Teke population. The genetic distance is the highest between populations of horses bred in Russia and Estonia. The genetic distance is the lowest between populations of Akhal-Teke horses bred in Russia and in the Czech Republic.

scholarly journals Is it possible to obtain zero estimates of genetic diversity? A case study of the Nigerian indigeneous goat breeds at the β-lactoglobulin gene locus

2017 ◽  
Vol 33 (4) ◽  
pp. 375-388
Author(s):  
Emeka Ezewudo ◽  
Geka Abubakar ◽  
Sunday Egena ◽  
Olushola Alabi
Keyword(s):  
Genetic Diversity ◽  
Genetic Distance ◽  
Gene Locus ◽  
Polymorphic Locus ◽  
Information Index ◽  
Expected Heterozygosity ◽  
Goat Population ◽  
The Mean ◽  
Β Lactoglobulin

The current investigation was conducted to appraise the genetic diversity and genetic distance of three goat populations namely; Red Sokoto, Sahel and West African Dwarf (WAD), in Nigeria, making use of blood samples collected from 20, 20 and 20 individual from which blood DNAs were extraction, respectively. The DNAs extracted were used to study polymorphism at the ?-lactoglobulin gene locus using RLFP-PCR process. Results revealed that the mean total number of alleles was 1 while the effective number of alleles was also 1. The percentage of polymorphic locus was 0% while Shannon?s information index, observed homozygousity, expected heterozygosity, unbiased expected heterozygosity and inbreeding coefficient (F) were all observed to be 0.000. The pairwise Fst was 0.000 between all the breeds of goats. Variation within and between the populations of goats was 0% at p>0.05. The genetic distance between the goat breeds was 0.000. The present study revealed that RLFP-PCR may not be a powerful tool for the study of the ?-lactoglobulin gene locus and hence other methodologies should be employed for a broader judgment on the genetic status of the goat population at the locus.

scholarly journals Gross value yield potential of coppice, high forest and model conversion of high forest to coppice on best sites

2011 ◽  
Vol 57 (No. 12) ◽  
pp. 536-546 ◽  
Author(s):  
M. Kneifl ◽  
J. Kadavý ◽  
R. Knott
Keyword(s):  
Czech Republic ◽  
The Other ◽  
Yield Potential ◽  
Fuel Wood ◽  
Annual Increment ◽  
Site Class ◽  
The Czech Republic ◽  
The Mean ◽  
Model Conversion ◽  
Mean Annual Increment

 Based on yield tables for oak high forest and oak coppice (both first site class) and using assortment tables and assortment prices in the Czech Republic in 2009, a set of variants of conversion of high forest to coppice was simulated. Average annual cut and average gross value of annual cut of such conversions were compared with those of well-established (in terms of the age structure balance) variants of coppice and high forest. Under the existing ratio of assortment prices, established coppice does not reach the gross value yield of high forest. No variant of simulated conversions was more financially profitable than the initial high forest. Furthermore, we found out that a +16.8% increase of the current fuel wood price would counterbalance the mean annual increment of gross value of the best coppice and the worst oak high forest variant. On the other hand, a +164.7% fuel wood price increase would be necessary to counterbalance the mean annual increment of gross value of the worst coppice and the best high forest variants.  

scholarly journals Genetic diversity of different breeds of Kazakh sheep using microsatellite analysis

2019 ◽  
Vol 62 (1) ◽  
pp. 305-312
Author(s):  
Kairat Dossybayev ◽  
Zarina Orazymbetova ◽  
Aizhan Mussayeva ◽  
Naruya Saitou ◽  
Rakhymbek Zhapbasov ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Distance ◽  
Microsatellite Loci ◽  
Allelic Diversity ◽  
Genetic Distances ◽  
Sheep Breed ◽  
Expected Heterozygosity ◽  
The Mean ◽  
High Level ◽  
Short Tandem

Abstract. A total of 75 individuals from five sheep populations in Kazakhstan were investigated based on 12 STR (short tandem repeat, also known as microsatellite) markers in order to study their genetic structure and phylogenetic relationship based on genetic distances. These sheep had a high level of genetic diversity. In total, 163 alleles were found in all the populations using 12 microsatellite loci. The mean number of alleles, effective number of alleles, and polymorphism information content (PIC) values per loci were 13.4, 5.9, and 0.78, respectively. Comparing the allelic diversity between the populations, the highest genetic diversity was observed in the Edilbay-1 sheep breed (8.333±0.644), and the lowest parameter was for Kazakh Arkhar-Merino (7.083±0.633). In all populations, there is a deficiency of heterozygosity. The largest genetic diversity was found in loci INRA023 and CSRD247 with 16 alleles, and the smallest polymorphism was noted for the locus D5S2 with 8 alleles. The level of observed heterozygosity was in the range 0.678±0.051 for Kazakh Arkhar-Merino and 0.767±0.047 for Kazakh fat-tailed coarse wool. The expected heterozygosity level range was from 0.702±0.033 for Kazakh Arkhar-Merino to 0.777±0.023 for Edilbay-1. When 12 microsatellite loci are compared, the OarFCB20 locus showed the highest level of genetic variability. Excess of heterozygosity was observed at three loci; MAF065, McM042, and OarFCB20. The highest genetic distance was observed between Kazakh Arkhar-Merino and Edilbay-1, whereas the genetic distance between Edilbay-1 and Edilbay-2 is the smallest using Nei's standard genetic distance. The Edilbay-1 sheep breed possesses the largest genetic diversity among these five populations.

scholarly journals Microsatellite DNA Analysis of Genetic Diversity and Parentage Testing in the Popular Dog Breeds in Poland

Genes ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 485
Author(s):  
Anna Radko ◽  
Angelika Podbielska
Keyword(s):  
Genetic Diversity ◽  
Dna Analysis ◽  
Inbreeding Coefficient ◽  
Effective Number ◽  
Effective Population ◽  
German Shepherd ◽  
Medium Level ◽  
The Mean ◽  
French Bulldog ◽  
Yorkshire Terrier

There is growing concern that extreme breed standardization contributes to a reduction of the effective population size and high levels of inbreeding, resulting in the loss of genetic diversity in many breeds. This study examined genetic diversity among eight popular dog breeds in Poland and evaluated the effectiveness of a 21-microsatellite (STR) panel recommended by the International Society for Animal Genetics (ISAG) for parent verification. The following breeds were characterized: German Shepherd, Maltese, Irish Wolfhound, Yorkshire Terrier, Biewer Yorkshire Terrier, Golden Retriever, Labrador Retriever, and French Bulldog. STRUCTURE analysis showed breed distinctiveness among all the dog breeds under study. Reynold’s distance ranged between θw = 0.634 and θw = 0.260. The studied breeds showed a medium level of genetic differentiation; the mean number of alleles per locus ranged from 3.4 to 6.6, and the effective number of alleles from 2.1 to 3.5. The mean degree of heterozygosity varied from 49% to 69% and from 47% to 68% for HO and HE, respectively. The population inbreeding coefficient (FIS) indicated an absence of inbreeding in the studied breeds. The average polymorphism information content (PIC) values for most of the breeds were higher than 0.5. The cumulative power of discrimination (PD) for all the markers in all breeds reached high values (close to 1.0), while the probability of identity (PID) was low, ranging between 10−11 and 10−19. The cumulative exclusion probability when the genotypes of one (PE1) and both parents (PE2) are known and showed that the parentage can be confirmed with a probability of 94.92% to 99.95% and 99.78% to 99.9999%, respectively.

scholarly journals Genetic Characterization of a Sheep Population in Oaxaca, Mexico: The Chocholteca Creole

Animals ◽  
2021 ◽  
Vol 11 (4) ◽  
pp. 1172
Author(s):  
Teodulo Salinas-Rios ◽  
Jorge Hernández-Bautista ◽  
Araceli Mariscal-Méndez ◽  
Magaly Aquino-Cleto ◽  
Amparo Martínez-Martínez ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Distance ◽  
Genetic Characterization ◽  
Polymorphic Information Content ◽  
Isolated Population ◽  
Effective Number ◽  
Sheep Population ◽  
Blood Samples ◽  
Expected Heterozygosity

Creole sheep in México have undergone crossbreeding, provoking the loss of genetic variability. The objective of the present study is to determine the intra-racial genetic diversity, the genetic relationship with other genotypes, and the populational substructure of the Oaxacan Creole sheep. Twenty-nine blood samples were obtained of Creole sheep of the Oaxaca Mixteca region in México. A genetic analysis was made with 41 microsatellites recommended for studies of genetic diversity in sheep. An analysis was made of genetic diversity, populational structure, and genetic distance with 27 other sheep populations. The study found 205 alleles with a range of 2 to 9 by locus and an effective number of 3.33. The intra-racial analysis showed a moderate genetic diversity with values of expected heterozygosity of 0.686 and observed of 0.756, a mean polymorphic information content of 0.609, and a mean coefficient of consanguinity of −0.002. In interracial genetic diversity for the coefficients of consanguinity, the values were FIS = 0.0774, FIT = 0.16993, and FST = 0.10028, showing an elevated genetic distance with other creole breeds, but close to Argentine Creole, to another Creole of México and the Spanish Merino. Its genetic structure showed that it does not have any populational subdivision nor mixes with the others analyzed. It is concluded that it is a distinct and isolated population and is proposed as the creole breed “Chocholteca” for its conservation.

scholarly journals Genetic diversity revealed by AFLP markers in Albanian goat breeds

2012 ◽  
Vol 64 (2) ◽  
pp. 799-807 ◽  
Author(s):  
Anila Hoda ◽  
Lumturi Sena ◽  
Gentian Hykaj
Keyword(s):  
Genetic Diversity ◽  
Genetic Distance ◽  
Fragment Length Polymorphism ◽  
Similarity Index ◽  
Shannon Index ◽  
Upgma Tree ◽  
Expected Heterozygosity ◽  
The Mean ◽  
High Level ◽  
Aflp Technique

The amplified fragment length polymorphism (AFLP) technique with three EcoRI/TaqI primer combinations was used in 185 unrelated individuals, representative of 6 local goat breeds of Albania, and 107 markers were generated. The mean Nei?s expected heterozygosity value for the whole population was 0.199 and the mean Shannon index was 0.249, indicating a high level of within-breed diversity. Wright?s FST index, Nei?s unbiased genetic distance and Reynolds? genetic distance were calculated. Pairwise Fst values among the populations ranged from 0.019 to 0.047. A highly significant average FST of 0.031 was estimated, showing a low level of breed subdivision. Most of the variation is accounted for by differences among individuals. Cluster analysis based on Reynolds? genetic distance between breeds and PCA were performed. An individual UPGMA tree based on Jaccard?s similarity index showed clusters with individuals from all goat breeds. Analysis of population structure points to a high level of admixture among breeds.

Polymorphism analysis of three Chinese indigenous sheep breeds by microsatellite markers

2015 ◽  
Author(s):  
Jun Yan Bai ◽  
You Bing Yang ◽  
Yu Qin Wang ◽  
Xiao Hui Zhang ◽  
You Zhi Pang
Keyword(s):  
Genetic Diversity ◽  
Genetic Distance ◽  
Microsatellite Markers ◽  
Polymorphism Information Content ◽  
The Other ◽  
Polymorphism Analysis ◽  
Effective Number ◽  
Sheep Breeds ◽  
Indigenous Sheep ◽  
Hardy Weinberg Equilibrium

In this study, six microsatellite markers were adopted to detect the genetic diversity and analyze the genetic distance of three Chinese indigenous sheep breeds. The results showed that 161 alleles were detected in the three breeds of sheep populations, and the average effective number of alleles, the average polymorphism information content (PIC) of six microsatellite markers in fat-tailed sheep, small tailed han-sheep, Yuxi fat-tailed sheep were 5.8844, 6.3103, 4.8017 and 0.7463, 0.7790, 0.7140 respectively. Five markers were highly polymorphic except marker ILSTS011 which gave moderate polymorphic. Except markers OarFCB48, OarFCB304 and BL1038, the other three microsatellite markers deviated significantly from the Hardy-Weinberg Equilibrium (P

scholarly journals Ground beetles (Carabidae) from slopes of Macošská stráň and Vilémovická stráň (Protected landscape area of Moravský kras, Czech Republic)

2011 ◽  
Vol 59 (3) ◽  
pp. 143-150 ◽  
Author(s):  
Jana Niedobová ◽  
Vladimír Hula ◽  
Pavla Šťastná
Keyword(s):  
Czech Republic ◽  
Endangered Species ◽  
Threatened Species ◽  
Ground Beetles ◽  
Red List ◽  
The Other ◽  
Pitfall Traps ◽  
The Czech Republic ◽  
Group A

Collecting of Carabidae was conducted using pitfall traps at four sites. The first two sites (T1 + T2) were at the slope of Macošská stráň and the other two sites (T3 + T4) at the slope of Vilémovická stráň. The study was done in 2008 and 2009. At Macošská stráň in 2008, 21 species of Carabidae with the total number of 228 individuals were found and in 2009, 18 species of the total number of 116 specimens were collected. At Vilémovická stráň in 2008, 22 species of Carabidae with the total number of 1977 specimens were found and in 2009, 21 species of the total number of 623 specimens were caught. In terms of classification of relictness, Macošská stráň in 2008 was dominated by species of adaptable group A (60%), species of eurytop group (E) were represented by 35% and of relic group (R) by 5%. In 2009, the same representation of species of groups A and E (47%) were found and the species of group R were represented by 6%. Vilémovická stráň in 2008 was dominated by species of group A (52%), species of group E were represented by 43% and of group R by 5%. In 2009 also dominated species of group A (54%), species of group E were represented by 41% and of group R by 5%. In the studied area we reported four endangered species of Carabidae protected by Law (No. 395/1992 Coll.) as amended, these were Calosoma auropunctatum (critically endangered), Brachinus crepitans, Carabus ullrichii and Cicindela campestris (endangered) and two species listed under the Red List of Threatened Species of the Czech Republic (Veselý et al., 2005). One of the species is listed as vulnerable (Calosoma auropunctatum) and one as near endangered (Carabus cancellatus). Another significant species found on the monitored sites was Aptinus bombarda.

scholarly journals Spiders of the Vine Plants in Southern Moravia

2015 ◽  
Vol 63 (5) ◽  
pp. 1471-1476
Author(s):  
Lucie Havlová ◽  
Vladimír Hula ◽  
Jana Niedobová
Keyword(s):  
Czech Republic ◽  
Soil Management ◽  
Common Species ◽  
Red List ◽  
The Other ◽  
Important Species ◽  
The Czech Republic ◽  
Spider Species ◽  
Southern Moravia ◽  
Different Parts

Araneofauna of vineyards is relatively known in Central Europe but we have a lack of knowledge about araneofauna which occur directly on the vine plants. Our investigation was focused on spiders which live on vine plants, especially on the vine plants trunks. We investigated spiders in six vineyards in southern Moravia (Šatov, Mikulov, Popice, Morkůvky, Nosislav and Blučina). Vineyards were under different soil management, traps were placed on different parts of particular locality (terraced and plain) and all localities were under integrated pest management. We employed two types of cardboard traps for spider collecting during whole vegetation season. Altogether, we collected 21 spider species which belong to seven families. The most important species was Marpissa nivoyi (Lucas, 1836), which is mentioned in the Red List as vulnerable (VU) and Sibianor tantulus (Simon, 1868) which had unknown distribution in the Czech Republic. The other very interesting result is that the most common species is myrmecomorph Synageles venator (Lucas, 1836), which is scarcely recorded in such huge numbers as we documented in our study.

Protistátní trestné činy v moderních kodifikacích

2021 ◽  
Author(s):  
David Kolumber
Keyword(s):  
Czech Republic ◽  
Soviet Union ◽  
Point Of View ◽  
The Other ◽  
The Czech Republic ◽  
Other Hand ◽  
Legal Concepts ◽  
Atlantic Area ◽  
Current Arrangement

The contribution “Anti-state Crimes in Modern Codifications” deals with the topic of anti-state crimes during centuries. Firstly, legal concepts in the pre-state period are mentioned. Then the attention is paid on the evolution of this institute in the Euro-Atlantic area. From this point of view, there are mentioned mainly regulations from England (1351), France (1810), Germany (1871) and Soviet Union (1958) which could be remarked as the most important for the development of other countries. On the other hand, it also reminds the development of codifications in Czechoslovakia, the Czech Republic and Slovakia, which were affected by the Austro-Hungarian legislations as well as German and Soviet approaches. The Czech current arrangement generally does not depart from the other European samples, but it cannot be omitted that in the Czech Republic it is distinguished the penal concept of the high treason (Landesverrat, vlastizrada) from the constitutional concept (Hochverrat, velezrada) which is dedicated to the presidential anti-state activities. The contribution also indicates that the concept of anti-state crimes in countries has not been unified and it has been varying according to various experiences and attitudes.

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