scholarly journals Dehalogenation of the Herbicides Bromoxynil (3,5-Dibromo-4-Hydroxybenzonitrile) and Ioxynil (3,5-Diiodino-4-Hydroxybenzonitrile) by Desulfitobacterium chlororespirans

2005 ◽  
Vol 71 (7) ◽  
pp. 3741-3746 ◽  
Author(s):  
Alison M. Cupples ◽  
Robert A. Sanford ◽  
Gerald K. Sims

ABSTRACT Desulfitobacterium chlororespirans has been shown to grow by coupling the oxidation of lactate to the metabolic reductive dehalogenation of ortho chlorines on polysubstituted phenols. Here, we examine the ability of D. chlororespirans to debrominate and deiodinate the polysubstituted herbicides bromoxynil (3,5-dibromo-4-hydroxybenzonitrile), ioxynil (3,5-diiodo-4-hydroxybenzonitrile), and the bromoxynil metabolite 3,5-dibromo-4-hydroxybenzoate (DBHB). Stoichiometric debromination of bromoxynil to 4-cyanophenol and DBHB to 4-hydroxybenzoate occurred. Further, bromoxynil (35 to 75 μM) and DBHB (250 to 260 μM) were used as electron acceptors for growth. Doubling times for growth (means ± standard deviations for triplicate cultures) on bromoxynil (18.4 ± 5.2 h) and DBHB (11.9 ± 1.4 h), determined by rate of [14C]lactate uptake into biomass, were similar to those previously reported for this microorganism during growth on pyruvate (15.4 h). In contrast, ioxynil was not deiodinated when added alone or when added with bromoxynil; however, ioxynil dehalogenation, with stoichiometric conversion to 4-cyanophenol, was observed when the culture was amended with 3-chloro-4-hydroxybenzoate (a previously reported electron acceptor). To our knowledge, this is the first direct report of deiodination by a bacterium in the Desulfitobacterium genus and the first report of an anaerobic pure culture with the ability to transform bromoxynil or ioxynil. This research provides valuable insights into the substrate range of D. chlororespirans.

2003 ◽  
Vol 48 (6) ◽  
pp. 125-131 ◽  
Author(s):  
W.R. Villatoro-Monzón ◽  
A.M. Mesta-Howard ◽  
E. Razo-Flores

Anaerobic BTEX biodegradation was tested in batch experiments using an anaerobic sediment as inoculum under Fe(III) and Mn(IV) reducing conditions. All BTEX were degraded under the conditions tested, specially under Mn(IV) reducing conditions, where benzene was degraded at a rate of 0.8 μmol l-1d-1, significantly much faster than Fe(III) reducing conditions. Under Fe(III) reducing conditions, ethylbenzene was the compound that degraded at the faster rate of 0.19 μmol l-1d-1. Mn(IV) reducing conditions are energetically more favourable than Fe(III), therefore, BTEX were more rapidly degraded under Mn(IV) reducing conditions. These results represent the first report of the degradation of benzene with Mn(IV) as the final electron acceptor. Amorphous manganese oxide is a natural widely distributed metal in groundwater, where it can be microbiologically reduced, leading to the degradation of monoaromatic compounds.


2017 ◽  
Vol 28 (1-2) ◽  
pp. 84-95
Author(s):  
O. M. Moroz ◽  
S. O. Hnatush ◽  
Ch. I. Bohoslavets ◽  
T. M. Hrytsun’ ◽  
B. M. Borsukevych

Sulfate reducing bacteria, capable to reductive transformation of different nature pollutants, used in biotechnologies of purification of sewage, contaminated by carbon, sulfur, nitrogen and metal compounds. H2S formed by them sediment metals to form of insoluble sulfides. Number of metals can be used by these microorganisms as electron acceptors during anaerobic respiration. Because under the influence of metal compounds observed slowing of bacteria metabolism, selection isolated from technologically modified ecotops resistant to pollutions strains is important task to create a new biotechnologies of purification. That’s why the purpose of this work was to study the influence of potassium dichromate, present in medium, on reduction of sulfate and nitrate ions by sulfate reducing bacteria Desulfovibrio desulfuricans IMV K-6, Desulfovibrio sp. Yav-6 and Desulfovibrio sp. Yav-8, isolated from Yavorivske Lake, to estimate the efficiency of possible usage of these bacteria in technologies of complex purification of environment from dangerous pollutants. Bacteria were cultivated in modified Kravtsov-Sorokin medium without SO42- and FeCl2×4H2O for 10 days. To study the influence of K2Cr2O7 on usage by bacteria SO42- or NO3- cells were seeded to media with Na2SO4×10H2O or NaNO3 and K2Cr2O7 at concentrations of 1.74 mM for total content of electron acceptors in medium 3.47 mM (concentration of SO42- in medium of standard composition). Cells were also seeded to media with 3.47 mM Na2SO4×10H2O, NaNO3 or K2Cr2O7 to investigate their growth in media with SO42-, NO3- or Cr2O72- as sole electron acceptor (control). Biomass was determined by turbidymetric method, content of sulfate, nitrate, dichromate, chromium (III) ions, hydrogen sulfide or ammonia ions in cultural liquid – by spectrophotometric method. It was found that K2Cr2O7 inhibits growth (2.2 and 1.3 times) and level of reduction by bacteria sulfate or nitrate ions (4.2 and 3.0 times, respectively) at simultaneous addition into cultivation medium of 1.74 mM SO42- or NO3- and 1.74 mM Cr2O72-, compared with growth and level of reduction of sulfate or nitrate ions in medium only with SO42- or NO3- as sole electron acceptor. Revealed that during cultivation of bacteria in presence of equimolar amount of SO42- or NO3- and Cr2O72-, last used by bacteria faster, content of Cr3+ during whole period of bacteria cultivation exceeded content H2S or NH4+. K2Cr2O7 in medium has most negative influence on dissimilatory reduction by bacteria SO42- than NO3-, since level of nitrate ions reduction by cells in medium with NO3- and Cr2O72- was a half times higher than level of sulfate ions reduction by it in medium with SO42- and Cr2O72-. The ability of bacteria Desulfovibrio sp. to priority reduction of Cr2O72- and after their exhaustion − NO3- and SO42- in the processes of anaerobic respiration can be used in technologies of complex purification of environment from toxic compounds.


Plant Disease ◽  
2000 ◽  
Vol 84 (5) ◽  
pp. 592-592 ◽  
Author(s):  
S. Grasso ◽  
A. Pane ◽  
S. O. Cacciola

Several perennial species of rhizomatous herbaceous ferns are cultivated as ornamental foliage plants. During late summer 1999, in a garden at the foot of Mount Etna, eastern Sicily (Italy), we noted a fern hedge showing patches of withered or stunted plants. The fern was identified as Cyrtomium falcatum (L.f.) C. Presl. (=Polystichum falcatum (L.f.) Diels), a house holly fern or Japanese holly fern, which is an ornamental fern native to East and South Asia. Other woody plants in the immediate vicinity had died over the last few years, including apricot and cedar trees whose stumps had not been removed. A close examination of uprooted ferns revealed the presence of creamy white fan-shaped mycelial mats with an odor typical of Armillaria species that were intermixed with the felt-like tangle formed by the rhizomes and roots of the ferns. In autumn, clumps of honey mushrooms with an annulus grew around patches of the withered fern hedge and in other parts of the same garden. The spore print of the basidiocarp was light cream. Basidiospores (8 to 9 × 5 to 6.5 µm) examined under a microscope were hyaline and apiculate. The fungus was isolated in pure culture from infected rhizomes with the selective medium of Kulman and Hendrix (3). In pure culture on 2% malt agar, the fungus formed ribbon-shaped, contorted, fast-growing rhizomorphs that branched profusely. Mycelial proteins of the isolate were analyzed by both polyacrylamide slab gel and starch gel electrophoreses, as described by Bragaloni et al. (1). The electrophoretic patterns of five isozymes (esterase, glutamic oxalacetic transaminase, phospho-glucomutase, alcohol dehydrogenase, and polygalacturonase) of the isolate from fern were identical to those of the reference isolate of A. mellea (Vahl:Fr.) Kumm. from grapevine. Conversely, the patterns were clearly distinct from those of reference isolates from other species, including A. ostoyae (Romagnesi) Herink, A. bulbosa (Barla) Kile et Watling, and A. cepistipes Velenovsky. Thus, on the basis of cultural, morphological, and biochemical characteristics, the species infecting the fern was identified as A. mellea. This pathogen, very common and widespread on wooded or previously wooded sites, has an extremely wide host range, encompassing both woody and herbaceous plants (2,4). However, this is the first report of A. mellea on a fern in Italy. References: (1) M. Bragaloni and N. Anselmi. Eur. J. For. Pathol. 27:147, 1997. (2) D. F. Farr et al. 1989. Fungi on Plants and Plants Products in the United States. The American Phytopathological Society, St. Paul, MN. (3) E. G. Kulman and F. F. Hendrix. Phytopathology 52:1310, 1962. (4) C. G. Shaw and G. A. Kile. 1991 Armillaria root disease. Agric. Handb. No 691. U.S. Department of Agriculture Forest Service, Washington, DC.


Plant Disease ◽  
2014 ◽  
Vol 98 (6) ◽  
pp. 849-849 ◽  
Author(s):  
A. Colmán ◽  
R. A. da Silva ◽  
R. Alves ◽  
M. Silva ◽  
R. W. Barreto

Phoenix roebelenii (Arecaceae), known as dwarf date (tamareira-anã in Brazil), is a palm native to Southeast Asia and widely cultivated worldwide because of its ornamental value and ease of adaptation to a broad range of climates and soil types (4). In June 2012, some individuals were observed in a private garden in the municipality of Viçosa (state of Minas Gerais, Brazil) bearing numerous necrotic lesions on its leaves. Representative samples were taken, dried in a plant press, and brought to the laboratory for examination. A fungus was regularly associated with the leaf spots. Fungal structures were mounted in lactophenol and slides were examined under a microscope (Olympus BX 51). Spores were taken from sporulating colonies with a sterile fine needle and plated on PDA for isolation. A pure culture was deposited in the culture collection of the Universidade Federal de Viçosa (accession COAD1338). A dried herbarium sample was deposited in the local herbarium (VIC39741). The fungus had the following morphology: conidiophores grouped on sporodochia, cylindrical, 12 to 29 × 5 to 6 μm, dark brown; conidiogenous cells, terminal, proliferating percurrently (annellidic), 8 to 20 × 5 to 6 μm, pale to dark brown; conidia obclavate to subcylindrical, straight, 58 to 147 × 5 to 6 μm, 6 to 16 septate, hila thickened and darkened with a thin-walled projecting papilla, dark brown, and verrucose. The morphology of the Brazilian collections agrees well with the description of Stigmina palmivora (2), a species known to cause leaf spots on P. roebelenii in the United States (Florida) and Japan (3). Pathogenicity was demonstrated through inoculation of leaves of healthy plants by placing 6 mm diameter cuture disks of COAD1338 on the leaf surface followed by incubation in a moist chamber for 48 h and then transferred to a greenhouse bench at 21 ± 3°C. Typical leaf spots were observed 15 days after inoculation. DNA was extracted from the isolate growing in pure culture and ITS and LSU sequences were generated and deposited in GenBank under the accession numbers KF656785 and KF656786, respectively. These were compared by BLASTn with other entries in GenBank, and the closest match for each region were Mycosphaerella colombiensis strain X215 and M. irregulariamosa strain CPC 1362 (EU514231, GU2114441) with 93% of nucleotide homology (over 100% query coverage) for ITS and 98% of nucleotide homology (over 100% query coverage) for LSU. There are no sequences for S. palmivora deposited in public databases for comparison, but for Stigmina platani, the type species in this genus, 86% and 96% nucleotide homology for ITS and LSU with S. palmivora were found. The genus Stigmina is regarded as being polyphyletic (1) and this is probably reflected by these low homology levels found in the BLASTn search. To our knowledge, this is the first report of Stigmina palmivora in Brazil. References: (1) P. W. Crous et al. Stud. Mycol. 75:37, 2012. (2) M. B. Ellis. Dematiaceous Hyphomycetes. Commonwealth Mycological Institute, Kew, UK, 1971. (3) D. F. Farr and A. Y. Rossman. Fungal Databases. Syst. Mycol. Microbiol. Lab. ARS, USDA. Retrieved from http://nt.ars-grin.gov/fungaldatabases/ , 2013. (4) H. Lorenzi et al. Palmeira no Brasil: Exóticas e Nativas, 2nd ed. Editora Plantarum, Nova Odessa, Brazil, 2005.


2019 ◽  
Vol 86 (5) ◽  
Author(s):  
Jie Liu ◽  
Lorenz Adrian ◽  
Max M. Häggblom

ABSTRACT Organohalide respiration is an important process in the global halogen cycle and for bioremediation. In this study, we compared the global transcriptomic and proteomic analyses of Desulfoluna spongiiphila strain AA1, an organohalide-respiring member of the Desulfobacterota isolated from a marine sponge, with 2,6-dibromophenol or with sulfate as an electron acceptor. The most significant difference of the transcriptomic analysis was the expression of one reductive dehalogenase gene cluster (rdh16), which was significantly upregulated with the addition of 2,6-dibromophenol. The corresponding protein, reductive dehalogenase RdhA16032, was detected in the proteome under treatment with 2,6-dibromophenol but not with sulfate only. There was no significant difference in corrinoid biosynthesis gene expression levels between the two treatments, indicating that the production of corrinoid in D. spongiiphila is constitutive or not specific for organohalide versus sulfate respiration. Electron-transporting proteins or mediators unique for reductive dehalogenation were not revealed in our analysis, and we hypothesize that reductive dehalogenation may share an electron-transporting system with sulfate reduction. The metabolism of D. spongiiphila, predicted from transcriptomic and proteomic results, demonstrates high metabolic versatility and provides insights into the survival strategies of a marine sponge symbiont in an environment rich in organohalide compounds and other secondary metabolites. IMPORTANCE Respiratory reductive dehalogenation is an important process in the overall cycling of both anthropogenic and natural organohalide compounds. Marine sponges produce a vast array of bioactive compounds as secondary metabolites, including diverse halogenated compounds that may enrich for dehalogenating bacteria. Desulfoluna spongiiphila strain AA1 was originally enriched and isolated from the marine sponge Aplysina aerophoba and can grow with both brominated compounds and sulfate as electron acceptors for respiration. An understanding of the overall gene expression and the protein production profile in response to organohalides is needed to identify the full complement of genes or enzymes involved in organohalide respiration. Elucidating the metabolic capacity of this sponge-associated bacterium lays the foundation for understanding how dehalogenating bacteria may control the fate of organohalide compounds in sponges and their role in a symbiotic organobromine cycle.


2016 ◽  
Vol 13 (5) ◽  
pp. 816 ◽  
Author(s):  
Zhi-Guo Yu ◽  
Jörg Göttlicher ◽  
Ralph Steininger ◽  
Klaus-Holger Knorr

Environmental contextThe extent to which organic matter decomposition generates carbon dioxide or methane in anaerobic ecosystems is determined by the presence or absence of particular electron acceptors. Evaluating carbon dioxide and methane production in anaerobic incubation of peat, we found that organic matter predominated as an electron acceptor over considered inorganic electron acceptors. We also observed changes in organic sulfur speciation suggesting a contribution of organic sulfur species to the electron-accepting capacity of organic matter. AbstractAn often observed excess of CO2 production over CH4 production in freshwater ecosystems presumably results from a direct or indirect role of organic matter (OM) as electron acceptor, possibly supported by a cycling of oxidised and reduced sulfur species. To confirm the role of OM electron-accepting capacities (EACOM) in anaerobic microbial respiration and to elucidate internal sulfur cycling, peat soil virtually devoid of inorganic electron acceptors was incubated under anaerobic conditions. Thereby, production of CO2 and CH4 at a cumulative ratio of 3.2:1 was observed. From excess CO2 production and assuming a nominal oxidation state of carbon in OM of zero, we calculated a net consumption rate of EACOM of 2.36µmol electron (e–)cm–3day–1. Addition of sulfate (SO42–) increased CO2 and suppressed CH4 production. Moreover, subtracting the EAC provided though SO42–, net consumption rates of EACOM had increased to 3.88–4.85µmol e–cm–3day–1, presumably owing to a re-oxidation of sulfide by OM at sites otherwise not accessible for microbial reduction. As evaluated by sulfur K-edge X-ray absorption near-edge structure spectroscopy, bacterial sulfate reduction presumably involved not only a recycling of inorganic sulfur species, but also a sulfurisation of OM, yielding reduced organic sulfur, and changes in oxidised organic sulfur species. Organic matter thus contributes to anaerobic respiration: (i) directly by EAC of redox-active functional groups; (ii) directly by oxidised organic sulfur; and (iii) indirectly by re-oxidation of sulfide to maintain bacterial sulfate reduction.


1979 ◽  
Vol 9 (5) ◽  
pp. 561-564
Author(s):  
M M Peel ◽  
J M Davis ◽  
W L Armstrong ◽  
J R Wilson ◽  
B Holmes

Pseudomonas paucimobilis was isolated in pure culture from an ulcer on the leg of a Japanese seaman while in an Australian port. A description of the isolate is given. This may be the first report of a human infection in which this recently characterized species is implicated as a pathogen.


1999 ◽  
Vol 65 (12) ◽  
pp. 5212-5221 ◽  
Author(s):  
Jan Gerritse ◽  
Oliver Drzyzga ◽  
Geert Kloetstra ◽  
Mischa Keijmel ◽  
Luit P. Wiersum ◽  
...  

ABSTRACT Strain TCE1, a strictly anaerobic bacterium that can grow by reductive dechlorination of tetrachloroethene (PCE) and trichloroethene (TCE), was isolated by selective enrichment from a PCE-dechlorinating chemostat mixed culture. Strain TCE1 is a gram-positive, motile, curved rod-shaped organism that is 2 to 4 by 0.6 to 0.8 μm and has approximately six lateral flagella. The pH and temperature optima for growth are 7.2 and 35°C, respectively. On the basis of a comparative 16S rRNA sequence analysis, this bacterium was identified as a new strain of Desulfitobacterium frappieri, because it exhibited 99.7% relatedness to the D. frappieri type strain, strain PCP-1. Growth with H2, formate,l-lactate, butyrate, crotonate, or ethanol as the electron donor depends on the availability of an external electron acceptor. Pyruvate and serine can also be used fermentatively. Electron donors (except formate and H2) are oxidized to acetate and CO2. When l-lactate is the growth substrate, strain TCE1 can use the following electron acceptors: PCE and TCE (to produce cis-1,2-dichloroethene), sulfite and thiosulfate (to produce sulfide), nitrate (to produce nitrite), and fumarate (to produce succinate). Strain TCE1 is not able to reductively dechlorinate 3-chloro-4-hydroxyphenylacetate. The growth yields of the newly isolated bacterium when PCE is the electron acceptor are similar to those obtained for other dehalorespiring anaerobes (e.g.,Desulfitobacterium sp. strain PCE1 andDesulfitobacterium hafniense) and the maximum specific reductive dechlorination rates are 4 to 16 times higher (up to 1.4 μmol of chloride released · min−1 · mg of protein−1). Dechlorination of PCE and TCE is an inducible process. In PCE-limited chemostat cultures of strain TCE1, dechlorination is strongly inhibited by sulfite but not by other alternative electron acceptors, such as fumarate or nitrate.


mBio ◽  
2012 ◽  
Vol 3 (3) ◽  
Author(s):  
Christopher A. Lopez ◽  
Sebastian E. Winter ◽  
Fabian Rivera-Chávez ◽  
Mariana N. Xavier ◽  
Victor Poon ◽  
...  

ABSTRACTInformation on how emerging pathogens can invade and persist and spread within host populations remains sparse. In the 1980s, a multidrug-resistantSalmonella entericaserotype Typhimurium clone lysogenized by a bacteriophage carrying thesopEvirulence gene caused an epidemic among cattle and humans in Europe. Here we show that phage-mediated horizontal transfer of thesopEgene enhances the production of host-derived nitrate, an energetically highly valuable electron acceptor, in a mouse colitis model. In turn, nitrate fuels a bloom ofS. Typhimurium in the gut lumen through anaerobic nitrate respiration while suppressing genes for the utilization of energetically inferior electron acceptors such as tetrathionate. Through this mechanism, horizontal transfer ofsopEcan enhance the fitness ofS. Typhimurium, resulting in its significantly increased abundance in the feces.IMPORTANCEDuring gastroenteritis,Salmonella entericaserotype Typhimurium can use tetrathionate respiration to edge out competing microbes in the gut lumen. However, the concept that tetrathionate respiration confers a growth benefit in the inflamed gut is not broadly applicable to other host-pathogen combinations because tetrathionate respiration is a signature trait used to differentiateSalmonellaserotypes from most other members of the familyEnterobacteriaceae. Here we show that by acquiring the phage-carriedsopEgene,S. Typhimurium can drive the host to generate an additional respiratory electron acceptor, nitrate. Nitrate suppresses genes for the utilization of energetically inferior electron acceptors such as tetrathionate while enhancing the luminal growth ofS. Typhimurium through anaerobic nitrate respiration. Pathways for anaerobic nitrate respiration are widely conserved among members of the familyEnterobacteriaceae, thereby making our observations relevant to other enteric pathogens whose relative abundance in the intestinal lumen increases during infection.


2011 ◽  
Vol 102 (3) ◽  
pp. 2623-2628 ◽  
Author(s):  
Miriam A. Rosenbaum ◽  
Haim Y. Bar ◽  
Qasim K. Beg ◽  
Daniel Segrè ◽  
James Booth ◽  
...  

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