scholarly journals High-Quality Draft Whole-Genome Sequences of Three Strains of Enterobacter Isolated from Jamaican Dioscorea cayenensis (Yellow Yam)

2014 ◽  
Vol 2 (2) ◽  
Author(s):  
H. M. Gan ◽  
A. J. Triassi ◽  
M. S. Wheatley ◽  
M. A. Savka ◽  
A. O. Hudson
Keyword(s):  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Yellow Yam ◽  
Dioscorea Cayenensis

scholarly journals Whole-Genome Sequences of Two Closely Related Bacteria, Actinomyces sp. Strain Chiba101 and Actinomyces denticolens DSM 20671T

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Yu Kanesaki ◽  
Taichiro Ishige ◽  
Yuriko Sekigawa ◽  
Tomoko Kobayashi ◽  
Yasushi Torii ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type

ABSTRACT Actinomyces sp. strain Chiba101, isolated from an arthritic leg joint of a pig raised in Japan, is a bacterium closely related to Actinomyces denticolens. Here, we deciphered the complete genome sequence of Actinomyces sp. Chiba101 and the high-quality draft genome sequence of A. denticolens DSM 20671T.

scholarly journals Whole-Genome Sequencing Applied to the Molecular Epidemiology of Shiga Toxin-Producing Escherichia coli O157:H7 in Argentina: TABLE 1 

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Claudia Carolina Carbonari ◽  
Nahuel Fittipaldi ◽  
Sarah Teatero ◽  
Taryn B. T. Athey ◽  
Luis Pianciola ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Molecular Epidemiology ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Shiga Toxin ◽  
Whole Genome ◽  
Escherichia Coli O157 ◽  
Genome Sequences ◽  
High Quality ◽  
Human Infections

Shiga toxin-producing Escherichia coli strains are worldwide associated with sporadic human infections and outbreaks. In this work, we report the availability of high-quality draft whole-genome sequences for 19 O157:H7 strains isolated in Argentina.

scholarly journals High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing

2018 ◽  
Vol 6 (19) ◽  
Author(s):  
Pooja N. Patel ◽  
Rebecca L. Lindsey ◽  
Lisley Garcia-Toledo ◽  
Lori A. Rowe ◽  
Dhwani Batra ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Foodborne Pathogen ◽  
Severe Illness ◽  
Whole Genome ◽  
Genome Sequences ◽  
Pacbio Sequencing ◽  
High Quality ◽  
Content Type ◽  
Sequencing Platform

ABSTRACT Shiga toxin-producing Escherichia coli (STEC) is an enteric foodborne pathogen that can cause mild to severe illness. Here, we report the availability of high-quality whole-genome sequences for 77 STEC strains generated using the PacBio sequencing platform.

scholarly journals High-Quality Whole-Genome Sequences for 59 HistoricalShigellaStrains Generated with PacBio Sequencing

2018 ◽  
Vol 6 (15) ◽  
pp. e00282-18 ◽  
Author(s):  
Justin Kim ◽  
Rebecca L. Lindsey ◽  
Lisley Garcia-Toledo ◽  
Vladimir N. Loparev ◽  
Lori A. Rowe ◽  
...  
Keyword(s):  
Enteric Pathogens ◽  
Whole Genome ◽  
Genome Sequences ◽  
Pacbio Sequencing ◽  
High Quality ◽  
Content Type

ABSTRACTShigellaspp. are enteric pathogens that cause shigellosis. We report here the high-quality whole-genome sequences of 59 historicalShigellastrains that represent the four species and a variety of serotypes.

scholarly journals High-Quality Whole-Genome Sequences of the Oligo-Mouse-Microbiota Bacterial Community

2017 ◽  
Vol 5 (42) ◽  
Author(s):  
Debora Garzetti ◽  
Sandrine Brugiroux ◽  
Boyke Bunk ◽  
Rüdiger Pukall ◽  
Kathy D. McCoy ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Intestinal Bacteria ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Long Reads ◽  
Microbiome Research ◽  
Gnotobiotic Mice

ABSTRACT The Oligo-Mouse-Microbiota (Oligo-MM12) is a community of 12 mouse intestinal bacteria to be used for microbiome research in gnotobiotic mice. We present here the high-quality whole genome sequences of the Oligo-MM12 strains, which were obtained by combining the accuracy of the Illumina platforms with the long reads of the PacBio technology.

scholarly journals High-Quality Whole-Genome Sequences for 21 Enterotoxigenic Escherichia coli Strains Generated with PacBio Sequencing

2018 ◽  
Vol 6 (2) ◽  
Author(s):  
Peyton Smith ◽  
Rebecca L. Lindsey ◽  
Lori A. Rowe ◽  
Dhwani Batra ◽  
Devon Stripling ◽  
...  
Keyword(s):  
United States ◽  
Escherichia Coli ◽  
The United States ◽  
Enterotoxigenic Escherichia Coli ◽  
Whole Genome ◽  
Cruise Ship ◽  
Genome Sequences ◽  
Pacbio Sequencing ◽  
High Quality ◽  
Surveillance Studies

ABSTRACT Enterotoxigenic Escherichia coli (ETEC) is an important diarrheagenic pathogen. We report here the high-quality whole-genome sequences of 21 ETEC strains isolated from patients in the United States, international diarrheal surveillance studies, and cruise ship outbreaks.

scholarly journals Whole-Genome Sequences of Burkholderia pseudomallei Isolates Exhibiting Decreased Meropenem Susceptibility

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Erin P. Price ◽  
Melissa Laird Smith ◽  
Ellen E. Paxinos ◽  
Luke J. Tallon ◽  
Lisa Sadzewicz ◽  
...  
Keyword(s):  
Burkholderia Pseudomallei ◽  
Quality Standard ◽  
Resistance Mechanisms ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type ◽  
High Quality Standard

ABSTRACT We report here paired isogenic Burkholderia pseudomallei genomes obtained from three patients receiving intravenous meropenem for melioidosis treatment, with post-meropenem isolates developing decreased susceptibility. Two genomes were finished, and four were drafted to improved high-quality standard. These genomes will be used to identify meropenem resistance mechanisms in B. pseudomallei.

scholarly journals High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps

2017 ◽  
Vol 5 (35) ◽  
Author(s):  
Rebecca L. Lindsey ◽  
Dhwani Batra ◽  
Lori Rowe ◽  
Vladimir N. Loparev ◽  
Phalasy Juieng ◽  
...  
Keyword(s):  
Draft Genome ◽  
Shigella Sonnei ◽  
Whole Genome ◽  
Drug Resistant ◽  
Genome Sequences ◽  
Pacbio Sequencing ◽  
High Quality ◽  
Content Type ◽  
Genome Maps ◽  
Public Health Challenge

ABSTRACT Drug-resistant Shigella sonnei poses a clinical and public health challenge. We report here the high-quality draft whole-genome sequences of four outbreak-associated S. sonnei isolates; three were resistant to two or more antibiotics, and one was resistant to streptomycin only.

scholarly journals High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps: TABLE 1

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Rebecca L. Lindsey ◽  
Lori Rowe ◽  
Lisley Garcia-Toledo ◽  
Vladimir Loparev ◽  
Kristen Knipe ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Draft Genome ◽  
Foodborne Pathogen ◽  
The United States ◽  
Whole Genome ◽  
Genome Sequences ◽  
Pacbio Sequencing ◽  
High Quality ◽  
Optical Maps

Shiga toxin-producing Escherichia coli (STEC) is a foodborne pathogen. We report here the high-quality draft whole-genome sequences of five STEC strains isolated from clinical cases in the United States. This report is for STEC of serotypes O55:H7, O79:H7, O91:H14, O153:H2, and O156:H25.

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