scholarly journals Draft Genome Sequence of the Endophytic Bacterium Variovorax paradoxus KB5, Which Has Antagonistic Activity against a Phytopathogen, Pseudomonas syringae pv. tomato DC3000

2017 ◽  
Vol 5 (36) ◽  
Author(s):  
Chi Eun Hong ◽  
Sung Hee Jo ◽  
Ick-Hyun Jo ◽  
Haeyoung Jeong ◽  
Jeong Mee Park
Keyword(s):  
Pseudomonas Syringae ◽  
Genome Sequence ◽  
Draft Genome ◽  
Endophytic Bacterium ◽  
Biosynthetic Gene Cluster ◽  
Antagonistic Activity ◽  
Draft Genome Sequence ◽  
Tomato Dc3000 ◽  
Content Type ◽  
Variovorax Paradoxus

ABSTRACT Variovorax paradoxus KB5, isolated from the inside of Arabidopsis thaliana leaves, showed antibacterial activity against the phytopathogen Pseudomonas syringae pv. tomato DC3000. Here, we report a draft genome sequence of V. paradoxus KB5, which contains a delftibactin-like nonribosomal peptide biosynthetic gene cluster.

scholarly journals A Draft Genome Sequence of Pseudomonas syringae pv. tomato T1 Reveals a Type III Effector Repertoire Significantly Divergent from That of Pseudomonas syringae pv. tomato DC3000

2009 ◽  
Vol 22 (1) ◽  
pp. 52-62 ◽  
Author(s):  
Nalvo F. Almeida ◽  
Shuangchun Yan ◽  
Magdalen Lindeberg ◽  
David J. Studholme ◽  
David J. Schneider ◽  
...  
Keyword(s):  
Host Range ◽  
Host Specificity ◽  
Pseudomonas Syringae ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Tomato Dc3000 ◽  
Type Iii ◽  
Host Range Determination ◽  
Range Determination

Diverse gene products including phytotoxins, pathogen-associated molecular patterns, and type III secreted effectors influence interactions between Pseudomonas syringae strains and plants, with additional yet uncharacterized factors likely contributing as well. Of particular interest are those interactions governing pathogen-host specificity. Comparative genomics of closely related pathogens with different host specificity represents an excellent approach for identification of genes contributing to host-range determination. A draft genome sequence of Pseudomonas syringae pv. tomato T1, which is pathogenic on tomato but nonpathogenic on Arabidopsis thaliana, was obtained for this purpose and compared with the genome of the closely related A. thaliana and tomato model pathogen P. syringae pv. tomato DC3000. Although the overall genetic content of each of the two genomes appears to be highly similar, the repertoire of effectors was found to diverge significantly. Several P. syringae pv. tomato T1 effectors absent from strain DC3000 were confirmed to be translocated into plants, with the well-studied effector AvrRpt2 representing a likely candidate for host-range determination. However, the presence of avrRpt2 was not found sufficient to explain A. thaliana resistance to P. syringae pv. tomato T1, suggesting that other effectors and possibly type III secretion system–independent factors also play a role in this interaction.

scholarly journals Draft Genome Sequence of Bacillus pumilus Strain GM3FR, an Endophyte Isolated from Aerial Plant Tissues of Festuca rubra L

2017 ◽  
Vol 5 (13) ◽  
Author(s):  
Jacqueline Hollensteiner ◽  
Anja Poehlein ◽  
Rolf Daniel ◽  
Heiko Liesegang ◽  
Stefan Vidal ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Bacillus Pumilus ◽  
Draft Genome ◽  
Endophytic Bacterium ◽  
Draft Genome Sequence ◽  
Plant Tissues ◽  
Festuca Rubra ◽  
Content Type ◽  
Protein Encoding ◽  
Biocontrol Potential

ABSTRACT Here, we report the draft genome sequence of Bacillus pumilus GM3FR, an endophytic bacterium isolated from aerial plant tissues of Festuca rubra L. The draft genome consists of 3.5 Mb and harbors 3,551 predicted protein-encoding genes. The genome provides insights into the biocontrol potential of B. pumilus GM3FR.

scholarly journals Draft Genome Sequence of Pseudomonas syringae RAYR-BL, a Strain Isolated from Natural Accessions of Arabidopsis thaliana Plants

2022 ◽  
Author(s):  
Isabel Fuenzalida-Valdivia ◽  
Maria Victoria Gangas ◽  
Diego Zavala ◽  
Ariel Herrera-Vásquez ◽  
Fabrice Roux ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Pseudomonas Syringae ◽  
Genome Sequence ◽  
Plant Pathogen ◽  
Environmental Conditions ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Molecular Features ◽  
Plant Pathogen Interaction

Here, we report the genome sequence of the P. syringae strain RAYR-BL, isolated from natural accessions of Arabidopsis plants. The draft genome sequence consists of 5.85 Mbp assembled in 110 contigs. The study of P. syringae RAYR-BL is a valuable tool to investigate molecular features of plant-pathogen interaction under environmental conditions.

scholarly journals Complete Genome Sequence of the Endophytic Bacterium Chryseobacterium indologenes PgBE177, Isolated from Panax quinquefolius

2018 ◽  
Vol 7 (14) ◽  
Author(s):  
Chi Eun Hong ◽  
Jang Uk Kim ◽  
Jung Woo Lee ◽  
Kyong Hwan Bang ◽  
Ick-Hyun Jo
Keyword(s):  
Pseudomonas Syringae ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bacterial Pathogen ◽  
Endophytic Bacterium ◽  
Antagonistic Activity ◽  
Panax Quinquefolius ◽  
Tomato Dc3000 ◽  
Content Type ◽  
Chryseobacterium Indologenes

Chryseobacterium indologenes PgBE177, isolated from the root tissue of a 4-year-old Panax quinquefolius plant, showed antagonistic activity against Pseudomonas syringae pv. tomato DC3000, a bacterial pathogen.

scholarly journals Draft Genome Sequence of Burkholderia vietnamiensis Strain RS1, a Nitrogen-Fixing Endophyte Isolated from Sweet Potato

2018 ◽  
Vol 7 (3) ◽  
Author(s):  
Rina Shinjo ◽  
Kazuma Uesaka ◽  
Kunio Ihara ◽  
Shunsuke Sakazaki ◽  
Katsuya Yano ◽  
...  
Keyword(s):  
Nitrogen Fixation ◽  
Sweet Potato ◽  
Genome Sequence ◽  
Draft Genome ◽  
Endophytic Bacterium ◽  
Draft Genome Sequence ◽  
Nitrogen Fixing ◽  
Content Type ◽  
Burkholderia Vietnamiensis ◽  
Tuberous Roots

Burkholderia vietnamiensis strain RS1 is an endophytic bacterium with nitrogen-fixing ability that was isolated from tuberous roots of sweet potato. Here, we present its draft genome of 6,542,727 bases that contains a cluster of genes associated with nitrogen fixation.

scholarly journals Draft Genome Sequence of Streptomyces sp. Strain PAM3C, a Prospective Probiotic Agent Isolated from the Gut of the Bay Scallop, Argopecten purpuratus (Lamarck, 1819)

2021 ◽  
Vol 10 (38) ◽  
Author(s):  
Wilbert Serrano ◽  
Raul M. Olaechea ◽  
Ulrike I. Tarazona
Keyword(s):  
Genome Sequence ◽  
Inhibitory Activity ◽  
Pure Culture ◽  
Draft Genome ◽  
Antagonistic Activity ◽  
Draft Genome Sequence ◽  
Bacterial Strains ◽  
Content Type ◽  
Streptomyces Sp ◽  
Argopecten Purpuratus

Several bacterial genera with antagonistic activity against pathogenic organisms have been isolated in pure culture from the gut of the Peruvian scallop, Argopecten purpuratus . One strain shows a broad inhibitory activity against aquaculture pathogenic bacterial strains. In this communication, we announce the draft genome sequence of Streptomyces sp. strain PAM3C.

scholarly journals Draft Genome Sequence of Brevibacillus brevis Strain X23, a Biocontrol Agent against Bacterial Wilt

2012 ◽  
Vol 194 (23) ◽  
pp. 6634-6635 ◽  
Author(s):  
Wu Chen ◽  
Yunsheng Wang ◽  
Dingjun Li ◽  
Lin Li ◽  
Qiming Xiao ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Bacterial Wilt ◽  
Ralstonia Solanacearum ◽  
Biocontrol Agent ◽  
Draft Genome ◽  
Antagonistic Activity ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Circular Plasmid ◽  
Brevibacillus Brevis

ABSTRACTBrevibacillus brevisX23 is an appropriate biocontrol agent against bacterial wilt caused byRalstonia solanacearum. We report herein the draft genome sequence (6,566,879 bp) and a circular plasmid (6,600 bp) ofB. brevisX23, data which may be helpful for mining the antagonistic activity againstR. solanacearum.

scholarly journals Draft Genome Sequence of Kosakonia radicincitans UYSO10, an Endophytic Plant Growth-Promoting Bacterium of Sugarcane (Saccharum officinarum)

2019 ◽  
Vol 8 (43) ◽  
Author(s):  
Martín Beracochea ◽  
Cecilia Taulé ◽  
Federico Battistoni
Keyword(s):  
Plant Growth ◽  
Genome Sequence ◽  
Indoleacetic Acid ◽  
Draft Genome ◽  
Endophytic Bacterium ◽  
Saccharum Officinarum ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Plant Growth Promoting ◽  
Growth Promoting

Kosakonia radicincitas UYSO10 is an endophytic bacterium that was isolated from stem tissues of Saccharum officinarum plants cultivated in Uruguay. UYSO10 is a diazotrophic indoleacetic acid-producing bacterium with growth-promoting effects on sugarcane. Here, we report the draft genome sequence, in which genes that are probably involved in the plant-bacterium interaction were identified.

scholarly journals Draft Genome Sequence of Clostridium cochlearium Strain AGROS13, Isolated from a Sheep Dairy Farm in New Zealand

2020 ◽  
Vol 9 (26) ◽  
Author(s):  
Tanushree B. Gupta ◽  
Paul Maclean ◽  
Ruy Jauregui ◽  
Alexis N. Risson ◽  
Gale Brightwell
Keyword(s):  
New Zealand ◽  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Dairy Farm ◽  
Biosynthetic Gene Cluster ◽  
Draft Genome Sequence ◽  
Biosynthetic Gene ◽  
Content Type ◽  
Clostridium Cochlearium

ABSTRACT We report the draft genome sequence of a new Clostridium cochlearium strain, AGROS13, which was isolated from a sheep dairy farm environment in New Zealand. The genome is 2.7 Mbp, with a GC content of 28.2%. The genome sequence was found to be closely related to that of Clostridium cochlearium ATCC 17787. The new strain harbors a biosynthetic gene cluster coding for an unknown sactipeptide.

scholarly journals Draft Genome Sequence of an Endophytic Biocontrol Bacterium, Bacillus velezensis PG12, Isolated from Apple Fruit

2019 ◽  
Vol 8 (41) ◽  
Author(s):  
Qingchao Zeng ◽  
Jianbo Xie ◽  
Yan Li ◽  
Xinyi Chen ◽  
Qi Wang
Keyword(s):  
Genome Sequence ◽  
Biocontrol Agent ◽  
Draft Genome ◽  
Pathogenic Fungi ◽  
Endophytic Bacterium ◽  
Apple Fruit ◽  
Draft Genome Sequence ◽  
Bacillus Velezensis ◽  
Content Type ◽  
Bacterium Bacillus

Bacillus velezensis PG12 is a biocontrol endophytic bacterium that is capable of inhibition of a broad range of plant-pathogenic fungi. The strain has the potential to be developed into a biocontrol agent for use in agriculture. Here, we report the draft genome sequence of B. velezensis PG12, which contains 22 scaffolds (3,990,845 bp), 3,884 coding sequences (CDSs), and an average G+C content of 46.45%.

Sign in / Sign up

Export Citation Format

Share Document