scholarly journals Complete Genome Sequence of Bordetella pertussis Strain VA-190 Isolated from a Vaccinated 10-Year-Old Patient with Whooping Cough

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Joshua C. Eby ◽  
Lauren Turner ◽  
Bryan Nguyen ◽  
June Kang ◽  
Carly Neville ◽  
...  
Keyword(s):  
United States ◽  
Clinical Isolate ◽  
Genome Sequence ◽  
Bordetella Pertussis ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Whooping Cough ◽  
The United States ◽  
Laboratory Studies ◽  
Long Read

The number of cases of pertussis has increased in the United States despite vaccination. We present the genome of an isolate of Bordetella pertussis from a vaccinated patient from Virginia. The genome was sequenced by long-read methodology and compared to that of a clinical isolate used for laboratory studies, D420.

scholarly journals Complete Genome Sequence of a Human Norovirus Strain from the United States Classified as Genotype GII.P6_GII.6

2018 ◽  
Vol 6 (22) ◽  
Author(s):  
Haifeng Chen ◽  
Shiliang Wang ◽  
Weimin Wang
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gc Content ◽  
The United States ◽  
Virus Genome ◽  
Full Genome Sequence ◽  
Full Genome ◽  
Virus Genotype

ABSTRACT We report here the complete genome sequence of a GII.6 norovirus strain detected in a clinical fecal specimen from the United States. The virus genome has a length of 7,547 bp and a GC content of 50.1%. Complete norovirus genotyping of the full-genome sequence identified the virus genotype as GII.P6_GII.6.

scholarly journals The Complete Genome Sequence of Bacillus anthracis Ames “Ancestor”

2008 ◽  
Vol 191 (1) ◽  
pp. 445-446 ◽  
Author(s):  
Jacques Ravel ◽  
Lingxia Jiang ◽  
Scott T. Stanley ◽  
Mark R. Wilson ◽  
R. Scott Decker ◽  
...  
Keyword(s):  
United States ◽  
Bacillus Anthracis ◽  
Genome Sequence ◽  
Cold Storage ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
The United States ◽  
Pathogenic Bacterium ◽  
The Subject ◽  
The Ideal

ABSTRACT The pathogenic bacterium Bacillus anthracis has become the subject of intense study as a result of its use in a bioterrorism attack in the United States in September and October 2001. Previous studies suggested that B. anthracis Ames Ancestor, the original Ames fully virulent plasmid-containing isolate, was the ideal reference. This study describes the complete genome sequence of that original isolate, derived from a sample kept in cold storage since 1981.

scholarly journals A 25-Year-Old Sample Contributes the Complete Genome Sequence of Avian Coronavirus Vaccine Strain ArkDPI, Reisolated from Commercial Broilers in the United States

2020 ◽  
Vol 9 (9) ◽  
Author(s):  
Iryna V. Goraichuk ◽  
James F. Davis ◽  
Arun B. Kulkarni ◽  
Claudio L. Afonso ◽  
David L. Suarez
Keyword(s):  
United States ◽  
Vaccine Strain ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Broiler Chickens ◽  
The United States

Here, we report the complete genome sequence of Avian coronavirus strain ArkDPI of the GI-9 lineage, isolated from broiler chickens in North Georgia in 1994. This is the complete genome sequence of this vaccine strain, reisolated from broilers in the United States.

scholarly journals Complete Genome Sequence of an Influenza D Virus Strain Identified in a Pig with Subclinical Infection in the United States

2019 ◽  
Vol 8 (4) ◽  
Author(s):  
Peter Thielen ◽  
Jacqueline M. Nolting ◽  
Sarah W. Nelson ◽  
Thomas S. Mehoke ◽  
Craig Howser ◽  
...  
Keyword(s):  
United States ◽  
Respiratory Disease ◽  
Genome Sequence ◽  
Virus Strain ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
The United States ◽  
Viral Reservoir ◽  
Subclinical Infection

Influenza D virus was first described in 2011 from a pig with respiratory disease; however, recent evidence indicates that cattle are the major viral reservoir. Here, we describe the genome sequence of the eighth complete swine-origin influenza D virus deposited into GenBank, D/swine/Kentucky/17TOSU1262/2017, which was collected at a 2017 swine exhibition.

scholarly journals Complete Genome Sequence of Highly Virulent Porcine Reproductive and Respiratory Syndrome Virus Variants That Recently Emerged in the United States: TABLE 1 

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Aspen M. Workman ◽  
Timothy P. L. Smith ◽  
Fernando A. Osorio ◽  
Hiep L. X. Vu
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Severe Disease ◽  
The United States ◽  
Respiratory Syndrome Virus ◽  
Swine Herds ◽  
Highly Virulent ◽  
Viral Isolates

A recent outbreak of particularly virulent disease caused by porcine reproductive and respiratory syndrome virus has occurred in swine herds across the United States. We report here the complete genome sequence of eight viral isolates from four Nebraska herds experiencing an outbreak of severe disease in 2016.

scholarly journals Complete Genome Sequence of a Renamed Isolate, Trichoplusia ni Ascovirus 6b, from the United States

2018 ◽  
Vol 6 (10) ◽  
Author(s):  
Yuan-Yuan Liu ◽  
Wen-Fei Xian ◽  
Jin Xue ◽  
Yong-Lu Wei ◽  
Xiao-Wen Cheng ◽  
...  
Keyword(s):  
United States ◽  
Phylogenetic Relationship ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Trichoplusia Ni ◽  
The United States ◽  
Open Reading Frames ◽  
First Time ◽  
Reading Frames

ABSTRACT The complete genome of Trichoplusia ni ascovirus 6b (TnAV-6b) was sequenced for the first time. The TnAV-6b isolate, which has its closest phylogenetic relationship with the TnAV-6a isolate, has a circular genome of 185,664 bp, with a G+C content of 46.0% and 178 predicted open reading frames.

scholarly journals Complete Genome Sequence of Human Norovirus GII.Pe-GII.4 Sydney from the United States

2017 ◽  
Vol 5 (15) ◽  
Author(s):  
Zhihui Yang ◽  
Jan Vinjé ◽  
Michael Kulka
Keyword(s):  
United States ◽  
Stool Sample ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
The United States ◽  
Cruise Ship ◽  
Human Norovirus

ABSTRACT We report here the first near-complete genome sequence (7,551 nucleotides) of a human norovirus GII.Pe-GII.4 Sydney variant, detected in a stool sample from an outbreak on a cruise ship in 2013.

scholarly journals First Complete Genome Sequence of Cucurbit Aphid-Borne Yellows Virus from Pumpkin in the United States

2019 ◽  
Vol 8 (6) ◽  
Author(s):  
Vivek Khanal ◽  
Akhtar Ali
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Growing Season ◽  
The United States ◽  
The World

Cucurbit aphid-borne yellows virus (CABYV) was first described in France in 1992 and since then has been reported in various parts of the world, including the United States. Here, we present the first complete genome sequence of a CABYV isolate (BL4) that was collected from pumpkin during the 2017 growing season in Oklahoma.

scholarly journals Complete Genome Sequence of a Carbapenem-Resistant Escherichia coli Isolate with blaNDM-5 from a Dog in the United States

2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Gregory H. Tyson ◽  
Cong Li ◽  
Olgica Ceric ◽  
Renate Reimschuessel ◽  
Stephen Cole ◽  
...  
Keyword(s):  
United States ◽  
Escherichia Coli ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Carbapenem Resistance ◽  
The United States ◽  
Multidrug Resistant ◽  
Content Type ◽  
E Coli

The carbapenem resistance gene bla NDM-5 was identified in an Escherichia coli strain isolated from a dog. We report here the complete genome sequence of this E. coli strain; the bla NDM-5 gene was present on a large IncFII multidrug-resistant plasmid. This is the first bla NDM-5-carrying E. coli strain from an animal in the United States.

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