scholarly journals Draft Genome Sequences of Escherichia coli O113:H21 Strains Recovered from a Major Produce Production Region in California

2017 ◽  
Vol 5 (44) ◽  
Author(s):  
Beatriz Quiñones ◽  
Jaszemyn C. Yambao ◽  
Bertram G. Lee
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Draft Genome ◽  
Soil Samples ◽  
Genome Sequences ◽  
Content Type ◽  
Agricultural Region ◽  
Production Region ◽  
Waterborne Pathogen ◽  
Leafy Greens

ABSTRACT Shiga toxin-producing Escherichia coli is a foodborne and waterborne pathogen and is responsible for outbreaks of human gastroenteritis. This report documents the draft genome sequences of seven O113:H21 strains recovered from livestock, wildlife, and soil samples recovered from a major agricultural region for leafy greens in California, USA.

scholarly journals Draft Genome Sequences of Shiga Toxin-Producing Escherichia coli O157:H7 Strains Recovered from a Major Production Region for Leafy Greens in California

2019 ◽  
Vol 8 (27) ◽  
Author(s):  
Beatriz Quiñones ◽  
Jaszemyn C. Yambao ◽  
Christopher J. Silva ◽  
Bertram G. Lee
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Draft Genome ◽  
Foodborne Pathogen ◽  
Toxin Gene ◽  
Genome Sequences ◽  
Content Type ◽  
Production Region ◽  
Leafy Greens ◽  
Different Levels

ABSTRACT Shiga toxin-producing Escherichia coli O157:H7 is a foodborne pathogen and is responsible for outbreaks of human gastroenteritis. This report documents the draft genome sequences of nine O157:H7 cattle strains, which were identified to be PCR positive for a Shiga toxin gene but displayed different levels of functional toxin activity.

scholarly journals Draft Genome Sequences of Five Shiga Toxin-Producing Escherichia coli Isolates Harboring the New and Recently Described Subtilase Cytotoxin Allelic Variant subAB2-3

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Taurai Tasara ◽  
Lisa Fierz ◽  
Jochen Klumpp ◽  
Herbert Schmidt ◽  
Roger Stephan
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Sequence Data ◽  
Draft Genome ◽  
Allelic Variant ◽  
Genome Sequences ◽  
Content Type ◽  
Subtilase Cytotoxin

ABSTRACT We present here the draft genome sequences of five Shiga toxin-producing Escherichia coli (STEC) strains which tested positive in a primary subAB screening. Assembly and annotation of the draft genomes revealed that all strains harbored the recently described allelic variant subAB 2-3 . Based on the sequence data, primers were designed to identify and differentiate this variant.

scholarly journals Complete Genome Sequence of a Shiga Toxin-Producing Escherichia coli O26:H11 Strain (Sequence Type 21) and Two Draft Genome Sequences of Listeria monocytogenes Strains (Clonal Complex 1 [CC1] and CC59) Isolated from Fresh Produce in Germany

2020 ◽  
Vol 9 (49) ◽  
Author(s):  
Gregor Fiedler ◽  
Jan Kabisch ◽  
Erik Brinks ◽  
Sabrina Sprotte ◽  
Christina Boehnlein ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Listeria Monocytogenes ◽  
Shiga Toxin ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Clonal Complex ◽  
Draft Genome ◽  
Sequence Type ◽  
Genome Sequences ◽  
Content Type

ABSTRACT The complete genome sequence of a Shiga toxin-producing Escherichia coli (STEC) O26:H11 strain, MBT-5 (sequence type 21 [ST21], stx1a, stx2a, eae, ehxA), and two draft genome sequences of Listeria monocytogenes strains MBT-6 and MBT-7 belonging to the virulent sequence types 1 (ST1, clonal complex 1 [CC1]) and 59 (ST59, CC59), respectively, were determined. The strains were isolated in 2015 from ready-to-eat mixed greens in Germany.

scholarly journals Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains Isolated from Crows

2019 ◽  
Vol 8 (45) ◽  
Author(s):  
Michelle Q. Carter ◽  
Antares Pham ◽  
Diana K. Carychao ◽  
Michael B. Cooley
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Complete Genome ◽  
Enteric Pathogens ◽  
Genome Sequences ◽  
Content Type ◽  
Shiga Toxins ◽  
Leafy Greens ◽  
Genes Encoding ◽  
Growing Region

Escherichia coli strains RM9088 and RM10410 were isolated from crows near a leafy greens-growing region in California in April and July 2009, respectively. Both strains carry genes encoding Shiga toxins and other virulence factors in enteric pathogens. Here, we report the complete genome sequences of RM9088 and RM10410.

scholarly journals Draft Genome Sequences of 12 Shiga Toxin-Producing Escherichia coli Strains Isolated from Dairy Cattle in Portugal

2020 ◽  
Vol 9 (38) ◽  
Author(s):  
Gregor Fiedler ◽  
Andressa Ballem ◽  
Erik Brinks ◽  
Carina Almeida ◽  
Charles M. A. P. Franz ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Genetic Diversity ◽  
Dairy Cattle ◽  
Shiga Toxin ◽  
Draft Genome ◽  
Foodborne Pathogen ◽  
Genome Sequences ◽  
Content Type ◽  
The North ◽  
Contaminated Food

ABSTRACT Shiga toxin-producing Escherichia coli (STEC) is a foodborne pathogen transmitted from animals to humans through contaminated food. Cattle are the main reservoir of STEC, but their genetic diversity is still poorly characterized, especially regarding strains isolated in Portugal. We therefore present the draft genomic sequences of 12 STEC strains isolated from cattle in the north of Portugal.

scholarly journals Genome Sequences of Eight Shiga Toxin-Producing Escherichia coli Strains Isolated from a Produce-Growing Region in California

2018 ◽  
Vol 7 (1) ◽  
Author(s):  
Craig T. Parker ◽  
Kerry K. Cooper ◽  
Steven Huynh ◽  
Timothy P. Smith ◽  
James L. Bono ◽  
...  
Keyword(s):  
United States ◽  
Escherichia Coli ◽  
Shiga Toxin ◽  
Water Samples ◽  
The United States ◽  
Foodborne Illness ◽  
Genome Sequences ◽  
Content Type ◽  
Leafy Greens ◽  
Growing Region

Produce contaminated with Shiga toxin-producing Escherichia coli (STEC) is a continuing source of foodborne illness in the United States. This report documents the complete genome sequences of eight STEC strains isolated from livestock and water samples taken from a major agricultural region for leafy greens in California.

scholarly journals Draft Genome Sequences of Seven Strains of Shiga Toxin-Producing Escherichia coli O111 with Variation in Their Sensitivity to Novobiocin

2018 ◽  
Vol 7 (10) ◽  
Author(s):  
Luca Rotundo ◽  
Federica Boccia ◽  
Pina M. Fratamico ◽  
Aixia Xu ◽  
Christopher H. Sommers ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Draft Genome ◽  
False Negative ◽  
Genomic Sequences ◽  
Selective Agent ◽  
Genome Sequences ◽  
Content Type ◽  
Negative Detection

Inclusion of novobiocin as a selective agent for enrichment media and selective agars inhibits the growth of some Shiga toxin-producing Escherichia coli (STEC) strains, particularly non-O157 STEC, which can yield false-negative detection results. Here, we report the draft genomic sequences of seven STEC O111 isolates with different sensitivities to novobiocin.

scholarly journals Genome Sequences of Uncommon Shiga Toxin-Producing Escherichia coli Serotypes

2020 ◽  
Vol 9 (10) ◽  
Author(s):  
Baha Abdalhamid ◽  
Emily L. Mccutchen ◽  
Peter C. Iwen ◽  
Joao Carlos Gomes-Neto ◽  
Andrew K. Benson ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Draft Genome ◽  
The Other ◽  
Foodborne Disease ◽  
Genome Sequences ◽  
Content Type

Shiga toxin-producing Escherichia coli (STEC) is a foodborne disease with worldwide outbreaks. STEC serotypes O157, O26, O45, O103, O111, O121, and O145 cause the most outbreaks. There is little published information regarding the other serotypes. We report the draft genome sequences for 11 uncommon STEC serotypes from Nebraska.

scholarly journals Draft Genome Sequences of 19 Clinical stx -Harboring Escherichia coli O80:H2 Strains

2021 ◽  
Vol 10 (11) ◽  
Author(s):  
Marc J. A. Stevens ◽  
Nicole Cernela ◽  
Andrea Müller ◽  
Magdalena Nüesch-Inderbinen ◽  
Roger Stephan
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Draft Genome ◽  
Genome Sequences ◽  
Content Type

Shiga toxin-producing Escherichia coli (STEC) O80:H2 is an uncommon hybrid pathotype that has emerged in Switzerland and France. Here, we report the draft genome sequences of 19 stx -harboring Escherichia coli O80:H2 strains isolated between 2003 and 2019 from patients in Switzerland.

scholarly journals Draft Genome Sequences of the Obligatory Marine Myxobacterial Strains Enhygromyxa salina SWB005 and SWB007

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Jamshid Amiri Moghaddam ◽  
Anja Poehlein ◽  
Katja Fisch ◽  
Mohammad Alanjary ◽  
Rolf Daniel ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Draft Genome ◽  
Soil Samples ◽  
Genome Sequences ◽  
Content Type ◽  
Specialized Metabolites

ABSTRACT The two marine myxobacterial strains Enhygromyxa salina SWB005 and SWB007 were isolated from coastal soil samples using Escherichia coli as bait for these predatory strains. These strains produce unique specialized metabolites. Genomes were assembled into 312 contigs for E. salina SWB005 (9.0 Mbp) and 192 contigs for E. salina SWB007 (10.6 Mbp).

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