scholarly journals Complete Genome Sequence of Human Adenovirus 7 Associated with Fatal Adult Pneumonia

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Svetlana B. Yatsyshina ◽  
Margarita R. Ageeva ◽  
Andrey A. Deviatkin ◽  
Ekaterina V. Pimkina ◽  
Mikhail L. Markelov ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Virus Isolate ◽  
Human Adenovirus ◽  
Whole Genome ◽  
Autopsy Material

Human adenovirus 7 (hAdv7) 19BOVLB/Volgograd/Rus/2014 was isolated from the autopsy material from an adult with fatal pneumonia in Volgograd, Russia, in March 2014. Whole-genome sequencing of the virus isolate was performed.

scholarly journals Complete Genome Sequence of the Gut Commensal and Laboratory Strain Enterococcus faecium 64/3

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Jennifer K. Bender ◽  
Stefan Fiedler ◽  
Ingo Klare ◽  
Guido Werner
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Enterococcus Faecium ◽  
Complete Genome ◽  
Laboratory Strain ◽  
Whole Genome ◽  
Coding Sequences

The genome sequence of the commensal and widely used laboratory strain Enterococcus faecium 64/3 was resolved by means of PacificBioscience and Illumina whole-genome sequencing. The genome comprises 2,575,333 bp with 2,382 coding sequences as assigned by NCBI.

scholarly journals Complete Genome Sequence of Acinetobacter sp. Strain NCu2D-2 Isolated from a Mouse

2017 ◽  
Vol 5 (4) ◽  
Author(s):  
Ulrike Blaschke ◽  
Gottfried Wilharm
Keyword(s):  
Whole Genome Sequencing ◽  
Acinetobacter Baumannii ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Insertion Sequences ◽  
Whole Genome ◽  
Nosocomial Pathogen ◽  
Content Type

ABSTRACT Whole-genome sequencing of Acinetobacter sp. strain NCu2D-2, isolated from the trachea of a mouse, revealed the presence of a plasmid of 309,964 bp with little overall similarity to known plasmids and enriched in insertion sequences (ISs) closely related to IS elements known from the nosocomial pathogen Acinetobacter baumannii.

scholarly journals Complete Genome Sequence of a Lytic T7-Like Phage, Escherichia Phage vB_EcoP-Ro45lw, Isolated from Nonfecal Compost Samples

2019 ◽  
Vol 8 (9) ◽  
Author(s):  
Yen-Te Liao ◽  
Fang Liu ◽  
Vivian C. H. Wu
Keyword(s):  
Escherichia Coli ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Shiga Toxin ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Lytic Phage ◽  
Whole Genome ◽  
Content Type

Although isolation of the bacteriophages (phages) specific to Shiga toxin-producing Escherichia coli (STEC) is increasing, the number of those specific to STEC non-O157 strains, instead of STEC O157, with whole-genome sequencing characterization is relatively low. Here, we announce the complete genome sequence of a T7-like lytic phage against STEC O45.

scholarly journals Complete Genome Sequence of Escherichia coli Strain M8, Isolated from ob/ob Mice

2017 ◽  
Vol 5 (22) ◽  
Author(s):  
Jay Siddharth ◽  
Mathieu Membrez ◽  
Anirikh Chakrabarti ◽  
Bertrand Betrisey ◽  
Chieh Jason Chou ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Coli Strain ◽  
Whole Genome ◽  
Content Type ◽  
The Common

ABSTRACT Escherichia coli is one of the common inhabitants of the mammalian gastrointestinal track. We isolated a strain from an ob/ob mouse and performed whole-genome sequencing, which yielded a chromosome of ~5.1 Mb and three plasmids of ~160 kb, ~6 kb, and ~4 kb.

scholarly journals Complete Genome Sequence of the Temperate Klebsiella pneumoniae Phage KPP5665-2

2017 ◽  
Vol 5 (43) ◽  
Author(s):  
Gaby Carl ◽  
Claudia Jäckel ◽  
Josephine Grützke ◽  
Stefan Hertwig ◽  
Mirjam Grobbel ◽  
...  
Keyword(s):  
Klebsiella Pneumoniae ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Whole Genome ◽  
The Novel ◽  
Content Type ◽  
Narrow Host Range

ABSTRACT We describe here the genome sequence of the novel temperate Klebsiella pneumoniae phage KPP5665-2 isolated from a Klebsiella pneumoniae strain recovered from milk in Germany in 2016. The phage exhibited a narrow host range and a siphoviridal morphology. KPP5665-2-related prophage sequences were detected in whole-genome sequencing (WGS) data of various Klebsiella species isolates.

scholarly journals Whole-Genome Sequence of a Beak and Feather Disease Virus Isolate from a Fledgling Red-Capped Parrot ( Purpureicephalus spurius )

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Shubhagata Das ◽  
Sarker Subir ◽  
Jade K. Forwood ◽  
Seyed A. Ghorashi ◽  
Shane R. Raidal
Keyword(s):  
Disease Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Virus Isolate ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Novel Host ◽  
Feather Disease Virus

The complete genome sequence of beak and feather disease virus (BFDV) from a fledgling red-capped parrot ( Purpureicephalus spurius ) was assembled and characterized. The genome consists of 1,995 nucleotides and encodes two major proteins in opposing directions. This is the first evidence of BFDV infectivity and a complete genome sequence for this novel host.

scholarly journals Complete Genome Sequence of α-1,3-Glucanase-Producing Strain Paracoccus mutanolyticus RSP-02

2018 ◽  
Vol 7 (14) ◽  
Author(s):  
Ravi Naga Amrutha ◽  
Abhishek Shrivastav ◽  
Reddy Shetty Shravani ◽  
Sudheer Kumar Buddana ◽  
Uday Deshpande ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Complete Genome Sequence ◽  
Bacterial Strain ◽  
Complete Genome ◽  
Soil Samples ◽  
Whole Genome ◽  
Content Type ◽  
A Genome ◽  
Cellulosic Waste

A mutanase (α-1,3 glucanase)-producing bacterial strain of Paracoccus mutanolyticus was isolated from soil samples rich in cellulosic waste. Here, we report the whole-genome sequencing and annotation of P. mutanolyticus, which has a genome size of around 3.5 Mb and the potential to degrade water-insoluble α-1,3 glucans with an overall G+C content of 67.4%.

scholarly journals Complete Genome Sequence of a Sapporo Virus GV.2 Variant from a 2016 Outbreak of Gastroenteritis in Sweden

2017 ◽  
Vol 5 (5) ◽  
Author(s):  
Björn Hallström ◽  
Nina Lagerqvist ◽  
Maria Lind-Karlberg ◽  
Sofia Helgesson ◽  
Per Follin ◽  
...  
Keyword(s):  
Electron Microscopy ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Complete Genome Sequence ◽  
Acute Gastroenteritis ◽  
Complete Genome ◽  
Whole Genome ◽  
Virus Variant ◽  
Routine Diagnostics ◽  
Stool Specimens

ABSTRACT During an outbreak of acute gastroenteritis in Sweden when laboratory routine diagnostics failed to detect a causative agent, Sapporo virus was detected in stool specimens using electron microscopy (M.-P. Hergens, J. Nederby Öhd, E. Alm, H. Hervius Askling, S. Helgesson, M. Insulander, N. Lagerkvist, B. Svennungsson, M. Tihane, T. Tolfvenstam, P. Follin, unpublished data). Whole-genome sequencing revealed a Sapporo virus variant clustering with genogroup V.

scholarly journals Complete Genome Sequence of Mycoplasma bovis Strain KG4397, Isolated from Cattle in Japan

2019 ◽  
Vol 8 (40) ◽  
Author(s):  
Misako Morimoto ◽  
Tsuyoshi Kenri ◽  
Takashi Ohmori ◽  
Kaho Teshima ◽  
Kazumoto Shibuya ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Respiratory Diseases ◽  
Bacterial Pathogen ◽  
Mycoplasma Bovis ◽  
Whole Genome ◽  
Content Type ◽  
First Time

Mycoplasma bovis is a major bacterial pathogen that causes pneumonia, mastitis, and arthritis in cattle. In this study, we performed whole-genome sequencing of an M. bovis strain isolated in Japan for the first time and announce the complete genome sequence of strain KG4397, which caused respiratory diseases in cattle in 2012.

scholarly journals Complete Genome Sequence of Papaya Ringspot Virus Isolated from Genetically Modified Papaya in Hainan Island, China

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Guangyuan Zhao ◽  
Pu Yan ◽  
Wentao Shen ◽  
Decai Tuo ◽  
Xiaoying Li ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Virus Isolate ◽  
Genetically Modified ◽  
Hainan Island ◽  
Ringspot Virus ◽  
Papaya Ringspot Virus ◽  
Rt Pcr ◽  
Sequence Identity

The complete genome sequence (10,326 nucleotides) of a papaya ringspot virus isolate infecting genetically modified papaya in Hainan Island of China was determined through reverse transcription (RT)-PCR. The virus shares 92% nucleotide sequence identity with the isolate that is unable to infect PRSV-resistant transgenic papaya.

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