scholarly journals Complete Genome Sequence of Escherichia coli Strain M8, Isolated from ob/ob Mice

2017 ◽  
Vol 5 (22) ◽  
Author(s):  
Jay Siddharth ◽  
Mathieu Membrez ◽  
Anirikh Chakrabarti ◽  
Bertrand Betrisey ◽  
Chieh Jason Chou ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Coli Strain ◽  
Whole Genome ◽  
Content Type ◽  
The Common

ABSTRACT Escherichia coli is one of the common inhabitants of the mammalian gastrointestinal track. We isolated a strain from an ob/ob mouse and performed whole-genome sequencing, which yielded a chromosome of ~5.1 Mb and three plasmids of ~160 kb, ~6 kb, and ~4 kb.

scholarly journals Complete Genome Sequence of a Lytic T7-Like Phage, Escherichia Phage vB_EcoP-Ro45lw, Isolated from Nonfecal Compost Samples

2019 ◽  
Vol 8 (9) ◽  
Author(s):  
Yen-Te Liao ◽  
Fang Liu ◽  
Vivian C. H. Wu
Keyword(s):  
Escherichia Coli ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Shiga Toxin ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Lytic Phage ◽  
Whole Genome ◽  
Content Type

Although isolation of the bacteriophages (phages) specific to Shiga toxin-producing Escherichia coli (STEC) is increasing, the number of those specific to STEC non-O157 strains, instead of STEC O157, with whole-genome sequencing characterization is relatively low. Here, we announce the complete genome sequence of a T7-like lytic phage against STEC O45.

scholarly journals Complete Genome Sequence of Acinetobacter sp. Strain NCu2D-2 Isolated from a Mouse

2017 ◽  
Vol 5 (4) ◽  
Author(s):  
Ulrike Blaschke ◽  
Gottfried Wilharm
Keyword(s):  
Whole Genome Sequencing ◽  
Acinetobacter Baumannii ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Insertion Sequences ◽  
Whole Genome ◽  
Nosocomial Pathogen ◽  
Content Type

ABSTRACT Whole-genome sequencing of Acinetobacter sp. strain NCu2D-2, isolated from the trachea of a mouse, revealed the presence of a plasmid of 309,964 bp with little overall similarity to known plasmids and enriched in insertion sequences (ISs) closely related to IS elements known from the nosocomial pathogen Acinetobacter baumannii.

scholarly journals Complete Genome Sequence of the Temperate Klebsiella pneumoniae Phage KPP5665-2

2017 ◽  
Vol 5 (43) ◽  
Author(s):  
Gaby Carl ◽  
Claudia Jäckel ◽  
Josephine Grützke ◽  
Stefan Hertwig ◽  
Mirjam Grobbel ◽  
...  
Keyword(s):  
Klebsiella Pneumoniae ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Whole Genome ◽  
The Novel ◽  
Content Type ◽  
Narrow Host Range

ABSTRACT We describe here the genome sequence of the novel temperate Klebsiella pneumoniae phage KPP5665-2 isolated from a Klebsiella pneumoniae strain recovered from milk in Germany in 2016. The phage exhibited a narrow host range and a siphoviridal morphology. KPP5665-2-related prophage sequences were detected in whole-genome sequencing (WGS) data of various Klebsiella species isolates.

scholarly journals Complete Genome Sequence of the Gut Commensal and Laboratory Strain Enterococcus faecium 64/3

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Jennifer K. Bender ◽  
Stefan Fiedler ◽  
Ingo Klare ◽  
Guido Werner
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Enterococcus Faecium ◽  
Complete Genome ◽  
Laboratory Strain ◽  
Whole Genome ◽  
Coding Sequences

The genome sequence of the commensal and widely used laboratory strain Enterococcus faecium 64/3 was resolved by means of PacificBioscience and Illumina whole-genome sequencing. The genome comprises 2,575,333 bp with 2,382 coding sequences as assigned by NCBI.

scholarly journals Complete Genome Sequence of blaCTX-M-27-Encoding Escherichia coli Strain H105 of Sequence Type 131 Lineage C1/H30R

2017 ◽  
Vol 5 (31) ◽  
Author(s):  
Hiren Ghosh ◽  
Boyke Bunk ◽  
Swapnil Doijad ◽  
Judith Schmiedel ◽  
Linda Falgenhauer ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Coli Strain ◽  
Sequence Type ◽  
Content Type ◽  
E Coli ◽  
Extended Spectrum ◽  
Rate Of Increase

ABSTRACT Escherichia coli sequence type 131 (ST131) is the most frequent antimicrobial-resistant lineage of E. coli, propagating extended-spectrum β-lactamases (ESBL) worldwide. Recently, an alarming rate of increase in isolates of the sublineage C1/H30R-bla CTX-M-27 of ST131 in geographically distant countries was reported. Here, we present the complete genome sequence of the ST131 sublineage C1/H30R E. coli isolate harboring bla CTX-M-27 from Germany.

scholarly journals Complete Genome Sequence of Human Adenovirus 7 Associated with Fatal Adult Pneumonia

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Svetlana B. Yatsyshina ◽  
Margarita R. Ageeva ◽  
Andrey A. Deviatkin ◽  
Ekaterina V. Pimkina ◽  
Mikhail L. Markelov ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Virus Isolate ◽  
Human Adenovirus ◽  
Whole Genome ◽  
Autopsy Material

Human adenovirus 7 (hAdv7) 19BOVLB/Volgograd/Rus/2014 was isolated from the autopsy material from an adult with fatal pneumonia in Volgograd, Russia, in March 2014. Whole-genome sequencing of the virus isolate was performed.

scholarly journals Complete Genome Sequence of α-1,3-Glucanase-Producing Strain Paracoccus mutanolyticus RSP-02

2018 ◽  
Vol 7 (14) ◽  
Author(s):  
Ravi Naga Amrutha ◽  
Abhishek Shrivastav ◽  
Reddy Shetty Shravani ◽  
Sudheer Kumar Buddana ◽  
Uday Deshpande ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Complete Genome Sequence ◽  
Bacterial Strain ◽  
Complete Genome ◽  
Soil Samples ◽  
Whole Genome ◽  
Content Type ◽  
A Genome ◽  
Cellulosic Waste

A mutanase (α-1,3 glucanase)-producing bacterial strain of Paracoccus mutanolyticus was isolated from soil samples rich in cellulosic waste. Here, we report the whole-genome sequencing and annotation of P. mutanolyticus, which has a genome size of around 3.5 Mb and the potential to degrade water-insoluble α-1,3 glucans with an overall G+C content of 67.4%.

scholarly journals Complete Genome Sequence of a Shiga Toxin-Converting Bacteriophage, Escherichia Phage Lys12581Vzw, Induced from an Outbreak Shiga Toxin-Producing Escherichia coli Strain

2019 ◽  
Vol 8 (36) ◽  
Author(s):  
Yujie Zhang ◽  
Yen-Te Liao ◽  
Alexandra Salvador ◽  
Xiaohong Sun ◽  
Vivian C. H. Wu
Keyword(s):  
Escherichia Coli ◽  
Virulence Factors ◽  
Genome Sequence ◽  
Shiga Toxin ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Coli Strain ◽  
Genomic Information ◽  
Content Type

Although numerous Shiga toxin (Stx)-producing Escherichia coli (STEC) strains have been sequenced, genomic information on Stx-converting phages, highly related to the primary virulence factors of STEC, is scarce. Here, we report the complete genome sequence of a Stx-converting phage induced from an outbreak STEC O145 strain.

scholarly journals Complete Genome Sequence of the Uropathogenic Escherichia coli Strain NU14

2017 ◽  
Vol 5 (18) ◽  
Author(s):  
Kurosh S. Mehershahi ◽  
Swaine L. Chen
Keyword(s):  
Escherichia Coli ◽  
Urinary Tract ◽  
Urinary Tract Infections ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Coli Strain ◽  
Uropathogenic Escherichia Coli ◽  
Content Type ◽  
Tract Infections

ABSTRACT Escherichia coli is the most common bacterium causing urinary tract infections in humans. We report here the complete genome sequence of the uropathogenic Escherichia coli strain NU14, a clinical pyelonephritis isolate used for studying pathogenesis.

scholarly journals Complete Genome Sequence of a Colistin-Resistant Escherichia coli Strain Harboring mcr-1 on an IncHI2 Plasmid in the United States

2017 ◽  
Vol 5 (42) ◽  
Author(s):  
Victoria L. Gilrane ◽  
Stephen Lobo ◽  
Weihua Huang ◽  
Jian Zhuge ◽  
Changhong Yin ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
New York ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
The United States ◽  
Coli Strain ◽  
Beta Lactamase ◽  
Content Type ◽  
Extended Spectrum Beta Lactamase

ABSTRACT We report here the incidental detection and complete genome sequence of a urinary Escherichia coli strain harboring mcr-1 and resistant to colistin in a New York patient returning from Portugal in 2016. This strain, with sequence type 1485 (ST1485), was a non-extended-spectrum beta-lactamase (ESBL) and non-carbapenemase producer and carried the mcr-1 gene on an IncHI2 plasmid.

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